Personal tools

UBERON:0010077: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0010077
|alt_id=
|name=cuboidal epithelium
|namespace=
|def=
|xref=ncithesaurus:Cuboidal_Epithelium
|is_a=UBERON:0000483
|synonym=
|comment=AO notes: in NCIT this is glandular
|comment=AO notes: in NCIT this is glandular
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010077
|is_a=UBERON:0000483
|is_obsolete=
|located_in=
|located_in=
|name=cuboidal epithelium
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=ncithesaurus:Cuboidal_Epithelium
}}
}}

Revision as of 11:49, 12 September 2014

Name:cuboidal epithelium
Xrefs:
links:
ncithesaurus:Cuboidal_Epithelium
Comments:AO notes: in NCIT this is glandular

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000483(epithelium)



Children

is a:UBERON:0000484 (simple cuboidal epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010077 (cuboidal epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.41e-88FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_87d613a6233da88d2a452f832bb43e1bp1@CRYBB3
1.41e-88FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_87d613a6233da88d2a452f832bb43e1bp1@CRYBB3
3.32e-74FFCP PHASE1:Hg19::chr22:25615600..25615611,+#_e387c0581b12d408ac0027aa1340882ap1@CRYBB2
3.32e-74FFCP PHASE2:Hg19::chr22:25615600..25615611,+#_e387c0581b12d408ac0027aa1340882ap1@CRYBB2
5.48e-74FFCP PHASE1:Hg19::chr19:51891222..51891233,-#_9d596227366d3210aaafd8ca03c45c64p1@LIM2
5.48e-74FFCP PHASE2:Hg19::chr19:51891222..51891233,-#_9d596227366d3210aaafd8ca03c45c64p1@LIM2
3.8e-56FFCP PHASE2:Hg19::chr22:27017921..27017928,+#_9a4ec77b2c3681d8e641109b9f9284eap1@CRYBA4
3.8e-56FFCP PHASE1:Hg19::chr22:27017921..27017928,+#_9a4ec77b2c3681d8e641109b9f9284eap1@CRYBA4
3.1e-50FFCP PHASE2:Hg19::chr13:104778247..104778293,+#_17c788988f30f0b1f41bf0d0f4a66151p@chr13:104778247..104778293, +
3.1e-50FFCP PHASE2:Hg19::chr20:61204240..61204241,+#_17c788988f30f0b1f41bf0d0f4a66151p@chr20:61204240..61204241, +
3.1e-50FFCP PHASE1:Hg19::chr20:61204240..61204241,+#_17c788988f30f0b1f41bf0d0f4a66151p@chr20:61204240..61204241, +
3.1e-50FFCP PHASE1:Hg19::chr13:104778247..104778293,+#_17c788988f30f0b1f41bf0d0f4a66151p@chr13:104778247..104778293, +
5.14e-50FFCP PHASE1:Hg19::chr14:37642016..37642022,-#_c511136a68c1818b5503660b3f475305p7@SLC25A21
5.14e-50FFCP PHASE2:Hg19::chr14:37642016..37642022,-#_c511136a68c1818b5503660b3f475305p7@SLC25A21
5.14e-50FFCP PHASE2:Hg19::chr21:44592820..44592840,-#_c511136a68c1818b5503660b3f475305p2@CU686889
5.14e-50FFCP PHASE1:Hg19::chr21:44592820..44592840,-#_c511136a68c1818b5503660b3f475305p2@CU686889
6.6e-50FFCP PHASE2:Hg19::chr21:44589339..44589372,-#_10285a9a3567411e1a6def0f5c8035dep@chr21:44589339..44589372, -
6.6e-50FFCP PHASE1:Hg19::chr21:44592842..44592867,-#_10285a9a3567411e1a6def0f5c8035dep1@CU686889
6.6e-50FFCP PHASE1:Hg19::chr21:44589339..44589372,-#_10285a9a3567411e1a6def0f5c8035dep@chr21:44589339..44589372, -
6.6e-50FFCP PHASE2:Hg19::chr21:44592842..44592867,-#_10285a9a3567411e1a6def0f5c8035dep1@CU686889
6.6e-50FFCP PHASE2:Hg19::chr12:132475501..132475504,+#_10285a9a3567411e1a6def0f5c8035dep@chr12:132475501..132475504, +
6.6e-50FFCP PHASE1:Hg19::chr12:132475501..132475504,+#_10285a9a3567411e1a6def0f5c8035dep@chr12:132475501..132475504, +
6.27e-44FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_aef441c90c101ba87a27224fa527e270p11@PAX6
6.27e-44FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_aef441c90c101ba87a27224fa527e270p11@PAX6
1.92e-41FFCP PHASE1:Hg19::chr3:186262166..186262170,-#_25261972c72c60411d6f96a602c1b11dp1@CRYGS
1.92e-41FFCP PHASE2:Hg19::chr3:186262166..186262170,-#_25261972c72c60411d6f96a602c1b11dp1@CRYGS
4.94e-40FFCP PHASE2:Hg19::chr5:112173525..112173532,+#_7b3a00d4d408abfc6fe12070663d5c16p@chr5:112173525..112173532, +
4.94e-40FFCP PHASE1:Hg19::chr5:112173525..112173532,+#_7b3a00d4d408abfc6fe12070663d5c16p@chr5:112173525..112173532, +
1.62e-37FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_98c950c7c4cda382276364d5b7dcac9ap7@PTPRU
1.62e-37FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_98c950c7c4cda382276364d5b7dcac9ap7@PTPRU
2.1e-35FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_c36315ecc8e82319854c300ef3af29d3p3@SIX6
2.1e-35FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_c36315ecc8e82319854c300ef3af29d3p3@SIX6
6.73e-35FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_53723211f256c2eebb04c7007d956bd4p4@SIX6
6.73e-35FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_53723211f256c2eebb04c7007d956bd4p4@SIX6
5.06e-34FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_08c78aeb55416f8d3bb571ec83f9a666p@chr11:31667372..31667383, -
5.06e-34FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_08c78aeb55416f8d3bb571ec83f9a666p@chr11:31667372..31667383, -
8.36e-34FFCP PHASE2:Hg19::chr19:1470631..1470648,-#_ee2f58e8ccb6a5d9ba099e8b7cc79bb5p@chr19:1470631..1470648, -
8.36e-34FFCP PHASE1:Hg19::chr19:1470631..1470648,-#_ee2f58e8ccb6a5d9ba099e8b7cc79bb5p@chr19:1470631..1470648, -
5.55e-33FFCP PHASE1:Hg19::chr21:44589135..44589151,+#_368708ca725f35814601821649df8affp1@CRYAA
5.55e-33FFCP PHASE2:Hg19::chr21:44589135..44589151,+#_368708ca725f35814601821649df8affp1@CRYAA
9.55e-33FFCP PHASE1:Hg19::chr17:27573875..27573878,+#_b71fed6f7b5afcd82ea45f720bedbfa9p1@CRYBA1
9.55e-33FFCP PHASE2:Hg19::chr17:27573875..27573878,+#_b71fed6f7b5afcd82ea45f720bedbfa9p1@CRYBA1
2.74e-29FFCP PHASE2:Hg19::chr2:45168589..45168601,-#_d240d260ef773c954b672aa4298cd72fp2@ENST00000456467
2.74e-29FFCP PHASE1:Hg19::chr2:45168589..45168601,-#_d240d260ef773c954b672aa4298cd72fp2@ENST00000456467
3.65e-29FFCP PHASE2:Hg19::chr7:107883678..107883689,-#_29c5da89a348d88b2de169b1022992b4p13@NRCAM
3.65e-29FFCP PHASE1:Hg19::chr7:107883678..107883689,-#_29c5da89a348d88b2de169b1022992b4p13@NRCAM
7.46e-29FFCP PHASE1:Hg19::chr13:114202163..114202178,+#_904e2c55774bebf46b386b2df1a30cdcp@chr13:114202163..114202178, +
7.46e-29FFCP PHASE2:Hg19::chr13:114202163..114202178,+#_904e2c55774bebf46b386b2df1a30cdcp@chr13:114202163..114202178, +
1.36e-28FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_8bd174efa4f4001dd34b446a6fe6ac04p10@NLGN1
1.36e-28FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_8bd174efa4f4001dd34b446a6fe6ac04p10@NLGN1
2.64e-27FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_458de518f67527723c0e76d1958cb135p10@SIX3
2.64e-27FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_458de518f67527723c0e76d1958cb135p10@SIX3
8.39e-27FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_07cd2690850dea9534574b38bd616071p2@SIX6
8.39e-27FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_07cd2690850dea9534574b38bd616071p2@SIX6
5.56e-26FFCP PHASE2:Hg19::chr1:147374915..147374932,+#_3f977e2aee0d5d1bcdd9601e58afbfa5p1@GJA8
5.56e-26FFCP PHASE1:Hg19::chr3:150690809..150690822,-#_3f977e2aee0d5d1bcdd9601e58afbfa5p3@CLRN1
5.56e-26FFCP PHASE2:Hg19::chr20:35861148..35861151,+#_3f977e2aee0d5d1bcdd9601e58afbfa5p@chr20:35861148..35861151, +
5.56e-26FFCP PHASE1:Hg19::chrX:43587410..43587413,+#_3f977e2aee0d5d1bcdd9601e58afbfa5p@chrX:43587410..43587413, +
5.56e-26FFCP PHASE2:Hg19::chr9:75848662..75848671,-#_3f977e2aee0d5d1bcdd9601e58afbfa5p@chr9:75848662..75848671, -
5.56e-26FFCP PHASE1:Hg19::chr1:147374915..147374932,+#_3f977e2aee0d5d1bcdd9601e58afbfa5p1@GJA8
5.56e-26FFCP PHASE2:Hg19::chr19:40920692..40920700,-#_3f977e2aee0d5d1bcdd9601e58afbfa5p@chr19:40920692..40920700, -
5.56e-26FFCP PHASE1:Hg19::chr20:35861148..35861151,+#_3f977e2aee0d5d1bcdd9601e58afbfa5p@chr20:35861148..35861151, +
5.56e-26FFCP PHASE2:Hg19::chr3:150690809..150690822,-#_3f977e2aee0d5d1bcdd9601e58afbfa5p3@CLRN1
5.56e-26FFCP PHASE1:Hg19::chr9:75848662..75848671,-#_3f977e2aee0d5d1bcdd9601e58afbfa5p@chr9:75848662..75848671, -
5.56e-26FFCP PHASE2:Hg19::chrX:43587410..43587413,+#_3f977e2aee0d5d1bcdd9601e58afbfa5p@chrX:43587410..43587413, +
5.56e-26FFCP PHASE1:Hg19::chr19:40920692..40920700,-#_3f977e2aee0d5d1bcdd9601e58afbfa5p@chr19:40920692..40920700, -
7.14e-26FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_78837f5820cfc47694358cc1f4b38949p30@PDP1
7.14e-26FFCP PHASE1:Hg19::chr13:72440726..72440736,-#_78837f5820cfc47694358cc1f4b38949p19@DACH1
7.14e-26FFCP PHASE2:Hg19::chr19:17137781..17137792,-#_78837f5820cfc47694358cc1f4b38949p6@CPAMD8
7.14e-26FFCP PHASE2:Hg19::chr9:100057272..100057276,+#_78837f5820cfc47694358cc1f4b38949p@chr9:100057272..100057276, +
7.14e-26FFCP PHASE1:Hg19::chr16:85617064..85617073,-#_78837f5820cfc47694358cc1f4b38949p@chr16:85617064..85617073, -
7.14e-26FFCP PHASE1:Hg19::chr5:464155..464205,+#_78837f5820cfc47694358cc1f4b38949p@chr5:464155..464205, +
7.14e-26FFCP PHASE2:Hg19::chr4:140656282..140656285,-#_78837f5820cfc47694358cc1f4b38949p@chr4:140656282..140656285, -
7.14e-26FFCP PHASE1:Hg19::chr21:44592512..44592521,+#_78837f5820cfc47694358cc1f4b38949p@chr21:44592512..44592521, +
7.14e-26FFCP PHASE2:Hg19::chr21:44592750..44592758,-#_78837f5820cfc47694358cc1f4b38949p4@CU686889
7.14e-26FFCP PHASE1:Hg19::chr21:36253916..36253918,-#_78837f5820cfc47694358cc1f4b38949p@chr21:36253916..36253918, -
7.14e-26FFCP PHASE1:Hg19::chr19:41727698..41727705,+#_78837f5820cfc47694358cc1f4b38949p@chr19:41727698..41727705, +
7.14e-26FFCP PHASE2:Hg19::chr1:45769711..45769721,-#_78837f5820cfc47694358cc1f4b38949p@chr1:45769711..45769721, -
7.14e-26FFCP PHASE2:Hg19::chr13:72440726..72440736,-#_78837f5820cfc47694358cc1f4b38949p19@DACH1
7.14e-26FFCP PHASE2:Hg19::chr20:33903184..33903189,-#_78837f5820cfc47694358cc1f4b38949p11@UQCC
7.14e-26FFCP PHASE2:Hg19::chr21:44592358..44592365,+#_78837f5820cfc47694358cc1f4b38949p@chr21:44592358..44592365, +
7.14e-26FFCP PHASE2:Hg19::chr10:73406056..73406065,+#_78837f5820cfc47694358cc1f4b38949p@chr10:73406056..73406065, +
7.14e-26FFCP PHASE2:Hg19::chr2:45154282..45154288,-#_78837f5820cfc47694358cc1f4b38949p@chr2:45154282..45154288, -
7.14e-26FFCP PHASE1:Hg19::chr10:73406056..73406065,+#_78837f5820cfc47694358cc1f4b38949p@chr10:73406056..73406065, +
7.14e-26FFCP PHASE1:Hg19::chr3:156322310..156322314,-#_78837f5820cfc47694358cc1f4b38949p@chr3:156322310..156322314, -
7.14e-26FFCP PHASE1:Hg19::chr9:100057272..100057276,+#_78837f5820cfc47694358cc1f4b38949p@chr9:100057272..100057276, +
7.14e-26FFCP PHASE1:Hg19::chr7:123198284..123198329,-#_78837f5820cfc47694358cc1f4b38949p3@NDUFA5
7.14e-26FFCP PHASE1:Hg19::chr21:44592626..44592635,-#_78837f5820cfc47694358cc1f4b38949p5@CU686889
7.14e-26FFCP PHASE2:Hg19::chr21:44592788..44592807,+#_78837f5820cfc47694358cc1f4b38949p@chr21:44592788..44592807, +
7.14e-26FFCP PHASE1:Hg19::chr19:17137781..17137792,-#_78837f5820cfc47694358cc1f4b38949p6@CPAMD8
7.14e-26FFCP PHASE2:Hg19::chr1:86064794..86064797,+#_78837f5820cfc47694358cc1f4b38949p1@ENST00000426794
7.14e-26FFCP PHASE2:Hg19::chr1:115873480..115873484,+#_78837f5820cfc47694358cc1f4b38949p@chr1:115873480..115873484, +
7.14e-26FFCP PHASE2:Hg19::chr5:45038620..45038622,+#_78837f5820cfc47694358cc1f4b38949p@chr5:45038620..45038622, +
7.14e-26FFCP PHASE2:Hg19::chr5:124468141..124468176,-#_78837f5820cfc47694358cc1f4b38949p@chr5:124468141..124468176, -
7.14e-26FFCP PHASE2:Hg19::chr2:693025..693036,+#_78837f5820cfc47694358cc1f4b38949p@chr2:693025..693036, +
7.14e-26FFCP PHASE2:Hg19::chr2:10538258..10538282,+#_78837f5820cfc47694358cc1f4b38949p@chr2:10538258..10538282, +
7.14e-26FFCP PHASE1:Hg19::chr2:45154282..45154288,-#_78837f5820cfc47694358cc1f4b38949p@chr2:45154282..45154288, -
7.14e-26FFCP PHASE1:Hg19::chr21:44592750..44592758,-#_78837f5820cfc47694358cc1f4b38949p4@CU686889
7.14e-26FFCP PHASE1:Hg19::chr4:140656282..140656285,-#_78837f5820cfc47694358cc1f4b38949p@chr4:140656282..140656285, -
7.14e-26FFCP PHASE1:Hg19::chr12:56848437..56848442,-#_78837f5820cfc47694358cc1f4b38949p1@MIP

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0010077&oldid=3274674"