Personal tools

UBERON:0010523: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0010523
|alt_id=
|name=microcirculatory vessel
|namespace=
|def="A portion of tissue that consists of a tube composed of epithelial cells that connects larger vessels." [ZFA:0005251]
|xref=TAO:0005251;;ZFA:0005251
|is_a=UBERON:0000055
|synonym="vasculature" RELATED [ZFA:0005251]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A portion of tissue that consists of a tube composed of epithelial cells that connects larger vessels." [ZFA:0005251]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010523
|is_a=UBERON:0000055
|is_obsolete=
|located_in=
|located_in=
|name=microcirculatory vessel
|namespace=
|obo_creation_date=
|part_of=UBERON:0002049
|part_of=UBERON:0002049
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="vasculature" RELATED [ZFA:0005251]
|union_of=
|xref=TAO:0005251;;ZFA:0005251
}}
}}

Revision as of 11:50, 12 September 2014

Name:microcirculatory vessel
Definition:"A portion of tissue that consists of a tube composed of epithelial cells that connects larger vessels." [ZFA:0005251]
Xrefs:
links:

TAO:0005251

ZFA:0005251
Synonyms: "vasculature" RELATED [ZFA:0005251]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000055(vessel)
part_of:UBERON:0002049(vasculature)



Children

is a:UBERON:0001982 (capillary)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11265-116G5 (Endothelial Cells - Microvascular, donor1)
  • 11342-117G1 (Endothelial Cells - Microvascular, donor2)
  • 11414-118F1 (Endothelial Cells - Microvascular, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010523 (microcirculatory vessel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.06e-99FFCP PHASE2:Hg19::chr15:65935283..65935297,+#_7759d13d87d93e9f9db8e33351e3a9b0p11@SLC24A1
4.06e-99FFCP PHASE1:Hg19::chr15:65935283..65935297,+#_7759d13d87d93e9f9db8e33351e3a9b0p11@SLC24A1
6.24e-88FFCP PHASE2:Hg19::chr12:6161828..6161837,-#_ff8deeabd7744a3fdd72437f9b518292p@chr12:6161828..6161837, -
6.24e-88FFCP PHASE1:Hg19::chr12:6161828..6161837,-#_ff8deeabd7744a3fdd72437f9b518292p@chr12:6161828..6161837, -
9.74e-88FFCP PHASE1:Hg19::chr13:102379103..102379108,-#_2911b4ad713c0e6ecffc34dae861fbbdp@chr13:102379103..102379108, -
9.74e-88FFCP PHASE2:Hg19::chr13:102379103..102379108,-#_2911b4ad713c0e6ecffc34dae861fbbdp@chr13:102379103..102379108, -
2.28e-85FFCP PHASE2:Hg19::chr1:214453986..214454002,+#_551fbea3d572957ef489e286456aa4abp10@SMYD2
2.28e-85FFCP PHASE1:Hg19::chr1:214453986..214454002,+#_551fbea3d572957ef489e286456aa4abp10@SMYD2
3.04e-85FFCP PHASE2:Hg19::chr11:108743594..108743616,+#_00da7d55ca4180eba8fd4acda5fc84bep@chr11:108743594..108743616, +
3.04e-85FFCP PHASE1:Hg19::chr11:108743594..108743616,+#_00da7d55ca4180eba8fd4acda5fc84bep@chr11:108743594..108743616, +
7.21e-85FFCP PHASE2:Hg19::chr1:94526344..94526353,-#_619c7735749a07d9ff750fc680d810f2p4@ABCA4
7.21e-85FFCP PHASE1:Hg19::chr1:94526344..94526353,-#_619c7735749a07d9ff750fc680d810f2p4@ABCA4
1.28e-84FFCP PHASE2:Hg19::chr9:13446440..13446456,+#_9481556d5de391ab780bb8c0996fe6a7p2@ENST00000428006
1.28e-84FFCP PHASE1:Hg19::chr9:13446440..13446456,+#_9481556d5de391ab780bb8c0996fe6a7p2@ENST00000428006
2.27e-84FFCP PHASE1:Hg19::chr18:54339823..54339834,+#_631920a2a2c22652ed22fecf802d4641p8@WDR7
2.27e-84FFCP PHASE2:Hg19::chr18:54339823..54339834,+#_631920a2a2c22652ed22fecf802d4641p8@WDR7
3.03e-84FFCP PHASE1:Hg19::chr7:79998842..79998855,+#_0958e5bd9c9a3ff0f273d1e13f776c2cp25@CD36
3.03e-84FFCP PHASE2:Hg19::chr7:79998842..79998855,+#_0958e5bd9c9a3ff0f273d1e13f776c2cp25@CD36
4.55e-74FFCP PHASE1:Hg19::chr4:38057520..38057536,-#_34501227cd36519dbe908dd073d94d4fp@chr4:38057520..38057536, -
4.55e-74FFCP PHASE2:Hg19::chr4:38057520..38057536,-#_34501227cd36519dbe908dd073d94d4fp@chr4:38057520..38057536, -
5.01e-67FFCP PHASE1:Hg19::chr20:62679771..62679782,-#_8a05cfa7312d6bd88643750c755fc430p4@SOX18
5.01e-67FFCP PHASE2:Hg19::chr20:62679771..62679782,-#_8a05cfa7312d6bd88643750c755fc430p4@SOX18
2.39e-66FFCP PHASE1:Hg19::chr17:54893310..54893315,-#_0697036a9a89619f2f5db74a5fce5bdep15@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr17:54893310..54893315,-#_0697036a9a89619f2f5db74a5fce5bdep15@C17orf67
2.39e-66FFCP PHASE1:Hg19::chr2:122514086..122514090,+#_0697036a9a89619f2f5db74a5fce5bdep5@TSN
2.39e-66FFCP PHASE2:Hg19::chr2:122514086..122514090,+#_0697036a9a89619f2f5db74a5fce5bdep5@TSN
1.33e-60FFCP PHASE2:Hg19::chr3:30560333..30560348,+#_7fef8e8e4e0d8d41efe681d2029732f5p@chr3:30560333..30560348, +
1.33e-60FFCP PHASE1:Hg19::chr3:30560333..30560348,+#_7fef8e8e4e0d8d41efe681d2029732f5p@chr3:30560333..30560348, +
1.51e-54FFCP PHASE2:Hg19::chr2:56149828..56149839,-#_c5b6f246265703734c77e1d6779d75f1p17@EFEMP1
1.51e-54FFCP PHASE1:Hg19::chr2:56149828..56149839,-#_c5b6f246265703734c77e1d6779d75f1p17@EFEMP1
2.87e-53FFCP PHASE2:Hg19::chr5:106837881..106837888,-#_f2b8fd89b780edc2e8eb40d752474408p@chr5:106837881..106837888, -
2.87e-53FFCP PHASE1:Hg19::chr5:106837881..106837888,-#_f2b8fd89b780edc2e8eb40d752474408p@chr5:106837881..106837888, -
2.87e-53FFCP PHASE2:Hg19::chr2:73311401..73311431,-#_f2b8fd89b780edc2e8eb40d752474408p17@RAB11FIP5
2.87e-53FFCP PHASE1:Hg19::chr2:73311401..73311431,-#_f2b8fd89b780edc2e8eb40d752474408p17@RAB11FIP5
3.75e-53FFCP PHASE1:Hg19::chr15:74935416..74935419,-#_9eb0e71dd68c1de81adb3654d1609011p@chr15:74935416..74935419, -
3.75e-53FFCP PHASE2:Hg19::chr15:74935416..74935419,-#_9eb0e71dd68c1de81adb3654d1609011p@chr15:74935416..74935419, -
2.64e-50FFCP PHASE1:Hg19::chr12:4690021..4690046,+#_f0c37fde1eda7b6fe07f0da21235f80ep@chr12:4690021..4690046, +
2.64e-50FFCP PHASE2:Hg19::chr12:4690021..4690046,+#_f0c37fde1eda7b6fe07f0da21235f80ep@chr12:4690021..4690046, +
4.38e-50FFCP PHASE2:Hg19::chr17:28534912..28534942,-#_9d76add7854d53dc08fcb755bc9bcc14p@chr17:28534912..28534942, -
4.38e-50FFCP PHASE1:Hg19::chr17:28534912..28534942,-#_9d76add7854d53dc08fcb755bc9bcc14p@chr17:28534912..28534942, -
1.03e-46FFCP PHASE1:Hg19::chr4:189881560..189881604,-#_818c60ad7e4be1de9974011ee0edfc4cp@chr4:189881560..189881604, -
1.03e-46FFCP PHASE2:Hg19::chr4:189881560..189881604,-#_818c60ad7e4be1de9974011ee0edfc4cp@chr4:189881560..189881604, -
1.65e-46FFCP PHASE1:Hg19::chr22:19748407..19748412,+#_1aa2fc26eb2fad5b435f749cacbd5530p5@TBX1
1.65e-46FFCP PHASE2:Hg19::chr22:19748407..19748412,+#_1aa2fc26eb2fad5b435f749cacbd5530p5@TBX1
5.0e-45FFCP PHASE2:Hg19::chr6:168195978..168195989,+#_4f87719c0379a43d21ee739ad1599f79p3@LOC441179
5.0e-45FFCP PHASE1:Hg19::chr6:168195978..168195989,+#_4f87719c0379a43d21ee739ad1599f79p3@LOC441179
4.49e-44FFCP PHASE1:Hg19::chr15:65935213..65935234,+#_8a28de858427242713660ef1e6aca003p8@SLC24A1
4.49e-44FFCP PHASE2:Hg19::chr15:65935213..65935234,+#_8a28de858427242713660ef1e6aca003p8@SLC24A1
1.43e-43FFCP PHASE2:Hg19::chr5:141337703..141337712,-#_5ffafac017cb614f13f8d39c20afed88p4@PCDH12
1.43e-43FFCP PHASE1:Hg19::chr5:141337703..141337712,-#_5ffafac017cb614f13f8d39c20afed88p4@PCDH12
1.31e-40FFCP PHASE1:Hg19::chr22:19748074..19748094,-#_f47096e4abe3b0d0431fae881f9eb9c6p@chr22:19748074..19748094, -
1.31e-40FFCP PHASE2:Hg19::chr22:19748074..19748094,-#_f47096e4abe3b0d0431fae881f9eb9c6p@chr22:19748074..19748094, -
1.23e-38FFCP PHASE2:Hg19::chr2:33661536..33661549,+#_de4a6049b417050d6610000a319c001cp17@RASGRP3
1.23e-38FFCP PHASE1:Hg19::chr2:33661536..33661549,+#_de4a6049b417050d6610000a319c001cp17@RASGRP3
2.18e-38FFCP PHASE2:Hg19::chr6:49533964..49533975,+#_457bf81ae7f117e620a6c68a84e53447p@chr6:49533964..49533975, +
2.18e-38FFCP PHASE1:Hg19::chr6:49533964..49533975,+#_457bf81ae7f117e620a6c68a84e53447p@chr6:49533964..49533975, +
3.19e-38FFCP PHASE2:Hg19::chr6:46922535..46922542,-#_befd768bba248c40bdc5b9c8b85ae9f2p9@GPR116
3.19e-38FFCP PHASE1:Hg19::chr6:46922535..46922542,-#_befd768bba248c40bdc5b9c8b85ae9f2p9@GPR116
2.08e-36FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_e649e424fe530b638c648af3410ee0f7p@chr10:3477893..3477912, -
2.08e-36FFCP PHASE1:Hg19::chr6:84849274..84849294,+#_e649e424fe530b638c648af3410ee0f7p@chr6:84849274..84849294, +
2.08e-36FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_e649e424fe530b638c648af3410ee0f7p@chr10:3477893..3477912, -
2.08e-36FFCP PHASE2:Hg19::chr6:84849274..84849294,+#_e649e424fe530b638c648af3410ee0f7p@chr6:84849274..84849294, +
3.94e-34FFCP PHASE2:Hg19::chr3:30560368..30560379,+#_646762f565c7fdd23520e9523c5fbd89p@chr3:30560368..30560379, +
3.94e-34FFCP PHASE1:Hg19::chr3:30560368..30560379,+#_646762f565c7fdd23520e9523c5fbd89p@chr3:30560368..30560379, +
5.51e-34FFCP PHASE1:Hg19::chr4:144507245..144507268,-#_a3786faa6361f419df43eaae6bb0d59cp@chr4:144507245..144507268, -
5.51e-34FFCP PHASE2:Hg19::chr4:144507245..144507268,-#_a3786faa6361f419df43eaae6bb0d59cp@chr4:144507245..144507268, -
5.96e-34FFCP PHASE2:Hg19::chr15:65398647..65398656,-#_0cb0506e33b1536005bae70c6fd00634p3@UBAP1L
5.96e-34FFCP PHASE2:Hg19::chr10:4823046..4823055,-#_0cb0506e33b1536005bae70c6fd00634p@chr10:4823046..4823055, -
5.96e-34FFCP PHASE1:Hg19::chr15:65398647..65398656,-#_0cb0506e33b1536005bae70c6fd00634p3@UBAP1L
5.96e-34FFCP PHASE1:Hg19::chr10:4823046..4823055,-#_0cb0506e33b1536005bae70c6fd00634p@chr10:4823046..4823055, -
6.51e-34FFCP PHASE2:Hg19::chr1:47183850..47183861,-#_1bbc06397398f3d546ab2b85326a6e5ap12@KIAA0494
6.51e-34FFCP PHASE1:Hg19::chr1:47183850..47183861,-#_1bbc06397398f3d546ab2b85326a6e5ap12@KIAA0494
6.76e-34FFCP PHASE2:Hg19::chr1:228290095..228290116,-#_9c715c2707e30017ad2ac7333a9644b0p@chr1:228290095..228290116, -
6.76e-34FFCP PHASE1:Hg19::chr1:228290095..228290116,-#_9c715c2707e30017ad2ac7333a9644b0p@chr1:228290095..228290116, -
7.7e-34FFCP PHASE2:Hg19::chr17:65990349..65990362,-#_e22a5291f1382522b5ffa7ea7b7a6f28p@chr17:65990349..65990362, -
7.7e-34FFCP PHASE1:Hg19::chr19:47231566..47231577,-#_e22a5291f1382522b5ffa7ea7b7a6f28p@chr19:47231566..47231577, -
7.7e-34FFCP PHASE1:Hg19::chr22:19746577..19746611,+#_e22a5291f1382522b5ffa7ea7b7a6f28p@chr22:19746577..19746611, +
7.7e-34FFCP PHASE2:Hg19::chr19:47231566..47231577,-#_e22a5291f1382522b5ffa7ea7b7a6f28p@chr19:47231566..47231577, -
7.7e-34FFCP PHASE2:Hg19::chr22:19746577..19746611,+#_e22a5291f1382522b5ffa7ea7b7a6f28p@chr22:19746577..19746611, +
7.7e-34FFCP PHASE1:Hg19::chr17:65990349..65990362,-#_e22a5291f1382522b5ffa7ea7b7a6f28p@chr17:65990349..65990362, -
8.46e-34FFCP PHASE1:Hg19::chr4:183399811..183399829,+#_d27650ee74f319befcd2ca05f26ec048p@chr4:183399811..183399829, +
8.46e-34FFCP PHASE2:Hg19::chr4:183399811..183399829,+#_d27650ee74f319befcd2ca05f26ec048p@chr4:183399811..183399829, +
9.1e-34FFCP PHASE1:Hg19::chr7:107332367..107332379,+#_186d3733c9fed112176624c390c0ccdep3@SLC26A4
9.1e-34FFCP PHASE2:Hg19::chr7:107332367..107332379,+#_186d3733c9fed112176624c390c0ccdep3@SLC26A4
2.58e-33FFCP PHASE2:Hg19::chr2:71730376..71730412,+#_5b15c1612d363aac83b3436fa1424089p@chr2:71730376..71730412, +
2.58e-33FFCP PHASE1:Hg19::chr2:71730376..71730412,+#_5b15c1612d363aac83b3436fa1424089p@chr2:71730376..71730412, +
6.66e-33FFCP PHASE2:Hg19::chr9:139553916..139553927,+#_bc2488b600dc1d3473428eb9600fc5d2p@chr9:139553916..139553927, +
6.66e-33FFCP PHASE1:Hg19::chr9:139553916..139553927,+#_bc2488b600dc1d3473428eb9600fc5d2p@chr9:139553916..139553927, +
2.17e-32FFCP PHASE2:Hg19::chr10:3466752..3466759,-#_b2f29146c11a9bbf438c03fd605b7d40p@chr10:3466752..3466759, -
2.17e-32FFCP PHASE1:Hg19::chr10:3466752..3466759,-#_b2f29146c11a9bbf438c03fd605b7d40p@chr10:3466752..3466759, -
2.68e-32FFCP PHASE1:Hg19::chr12:96841308..96841312,+#_920b4e0a00bbea92d5b9c12b48de98f5p@chr12:96841308..96841312, +
2.68e-32FFCP PHASE2:Hg19::chr12:96841308..96841312,+#_920b4e0a00bbea92d5b9c12b48de98f5p@chr12:96841308..96841312, +
2.66e-31FFCP PHASE2:Hg19::chr12:120142354..120142372,-#_d920be83b4f5904efdc02af8d5d5e7e8p@chr12:120142354..120142372, -
2.66e-31FFCP PHASE1:Hg19::chr12:120142354..120142372,-#_d920be83b4f5904efdc02af8d5d5e7e8p@chr12:120142354..120142372, -
6.66e-31FFCP PHASE2:Hg19::chr1:61415107..61415136,-#_14649cd9284415fcd819b5a69f0bf4c2p@chr1:61415107..61415136, -
6.66e-31FFCP PHASE1:Hg19::chr1:61415107..61415136,-#_14649cd9284415fcd819b5a69f0bf4c2p@chr1:61415107..61415136, -
9.03e-31FFCP PHASE1:Hg19::chr15:89736241..89736275,+#_ac221b9c0dfc7fbc9b43103dbed8441cp@chr15:89736241..89736275, +
9.03e-31FFCP PHASE2:Hg19::chr15:89736241..89736275,+#_ac221b9c0dfc7fbc9b43103dbed8441cp@chr15:89736241..89736275, +
4.84e-30FFCP PHASE2:Hg19::chr10:4822908..4822927,-#_dc32d97c25947d3a9a00de169f7777d2p@chr10:4822908..4822927, -
4.84e-30FFCP PHASE1:Hg19::chr10:4822908..4822927,-#_dc32d97c25947d3a9a00de169f7777d2p@chr10:4822908..4822927, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0010523&oldid=3274708"