Personal tools

CL:0000038: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=erythroid progenitor cell
|name=erythroid progenitor cell
|namespace=cell;;efo
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 16:28, 12 September 2014

Name:erythroid progenitor cell
Namespace:FANTOM
Definition:"A progenitor cell committed to the erythroid lineage. This cell is ter119-positive but lacks expression of other hematopoietic lineage markers (lin-negative)." [GOC:add, ISBN:0721601464]
Xrefs:
links:
BTO:0004911
Synonyms: "BFU-E" RELATED []
"blast forming unit erythroid" RELATED []
"burst forming unit erythroid" RELATED []
"CFU-E" RELATED []
"colony forming unit erythroid" RELATED []
"erythroid stem cell" RELATED []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000764(erythroid lineage cell),CL:0000839(myeloid lineage restricted progenitor cell)
develops_from:CL:0000050(megakaryocyte-erythroid progenitor cell)



Children


is a:FF:0000055 (erythroid progenitor cell)
develops from:CL:0000547 (proerythroblast)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000038 (erythroid progenitor cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data