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Line 13: Line 13:
|located_in=
|located_in=
|name=vascular associated smooth muscle cell
|name=vascular associated smooth muscle cell
|namespace=cell
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0002049
|part_of=UBERON:0002049

Latest revision as of 16:33, 12 September 2014

Name:vascular associated smooth muscle cell
Namespace:FANTOM
Definition:"A smooth muscle cell assocatiated with the vasculature." [GOC:dsd, GOC:tfm]
Synonyms: "vascular smooth muscle cell" EXACT []
"VSMC" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000192(smooth muscle cell)
part_of:UBERON:0002049(vasculature)



Children


is a:CL:0002539 (aortic smooth muscle cell),CL:0002588 (smooth muscle cell of the umbilical vein),CL:0002589 (smooth muscle cell of the brachiocephalic vasculature),CL:0002590 (smooth muscle cell of the brain vasculature),CL:0002591 (smooth muscle cell of the pulmonary artery),CL:0002592 (smooth muscle cell of the coronary artery),CL:0002594 (smooth muscle cell of the umbilical artery),CL:0002595 (smooth muscle cell of the subclavian artery),CL:0002596 (smooth muscle cell of the carotid artery)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
  • 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
  • 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
  • 11244-116E2 (Canine hepatocytes, donor1)
  • 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
  • 11284-116I6 (Smooth Muscle Cells - Brachiocephalic, donor1)
  • 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
  • 11286-116I8 (Smooth Muscle Cells - Coronary Artery, donor1)
  • 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
  • 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)

... further results Mouse (Mus musculus)

  • 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
  • 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
  • 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
  • 11244-116E2 (Canine hepatocytes, donor1)
  • 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
  • 11284-116I6 (Smooth Muscle Cells - Brachiocephalic, donor1)
  • 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
  • 11286-116I8 (Smooth Muscle Cells - Coronary Artery, donor1)
  • 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
  • 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000359 (vascular associated smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data