CL:0000359: Difference between revisions
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|located_in= | |located_in= | ||
|name=vascular associated smooth muscle cell | |name=vascular associated smooth muscle cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002049 | |part_of=UBERON:0002049 |
Latest revision as of 16:33, 12 September 2014
Name: | vascular associated smooth muscle cell |
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Namespace: | FANTOM |
Definition: | "A smooth muscle cell assocatiated with the vasculature." [GOC:dsd, GOC:tfm] |
Synonyms: |
"vascular smooth muscle cell" EXACT [] "VSMC" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000192(smooth muscle cell) |
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part_of: | UBERON:0002049(vasculature) |
Children
is a: | CL:0002539 (aortic smooth muscle cell),CL:0002588 (smooth muscle cell of the umbilical vein),CL:0002589 (smooth muscle cell of the brachiocephalic vasculature),CL:0002590 (smooth muscle cell of the brain vasculature),CL:0002591 (smooth muscle cell of the pulmonary artery),CL:0002592 (smooth muscle cell of the coronary artery),CL:0002594 (smooth muscle cell of the umbilical artery),CL:0002595 (smooth muscle cell of the subclavian artery),CL:0002596 (smooth muscle cell of the carotid artery) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
- 11284-116I6 (Smooth Muscle Cells - Brachiocephalic, donor1)
- 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
- 11286-116I8 (Smooth Muscle Cells - Coronary Artery, donor1)
- 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
- 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)
... further results Mouse (Mus musculus)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
- 11284-116I6 (Smooth Muscle Cells - Brachiocephalic, donor1)
- 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
- 11286-116I8 (Smooth Muscle Cells - Coronary Artery, donor1)
- 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
- 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000359 (vascular associated smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data