CL:0000786: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=plasma cell | |name=plasma cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:36, 12 September 2014
| Name: | plasma cell | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "A terminally differentiated, post-mitotic, antibody secreting cell of the B cell lineage with the phenotype CD138-positive, surface immunonoglobulin-negative, and MHC Class II-negative. Plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern and are devoted to producing large amounts of immunoglobulin." [GO_REF:0000031, GOC:add, ISBN:0721601464, ISBN:0781735149] | |
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| Synonyms: | "plasmacyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000946(antibody secreting cell) |
|---|---|
| develops_from: | CL:0000980(plasmablast) |
Children
| is a: | FF:10840-111E3 (plasma cell leukemia cell line:ARH-77) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10840-111E3 (plasma cell leukemia cell line:ARH-77)
Mouse (Mus musculus)
- 10840-111E3 (plasma cell leukemia cell line:ARH-77)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000786 (plasma cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
