CL:0000818: Difference between revisions
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|name=transitional stage B cell | |name=transitional stage B cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= |
Latest revision as of 16:37, 12 September 2014
Name: | transitional stage B cell |
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Namespace: | FANTOM |
Definition: | "An immature B cell of an intermediate stage between the pre-B cell stage and the mature naive stage with the phenotype surface IgM-positive and CD19-positive, and are subject to the process of B cell selection. A transitional B cell migrates from the bone marrow into the peripheral circulation, and then to the spleen." [GO_REF:0000031, GOC:add, ISBN:0781735149, PMID:12810111] |
Synonyms: |
"T1 B cell" NARROW [] "T2 B cell" NARROW [] "T3 B cell" NARROW [] "transitional stage B lymphocyte" EXACT [] "transitional stage B-cell" EXACT [] "transitional stage B-lymphocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000236(B cell) |
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develops_from: | CL:0000816(immature B cell) |
Children
disjoint from: | CL:0000785 (mature B cell) |
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develops from: | CL:0000785 (mature B cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000818 (transitional stage B cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data