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|located_in=
|located_in=
|name=transitional stage B cell
|name=transitional stage B cell
|namespace=cell;;efo
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 16:37, 12 September 2014

Name:transitional stage B cell
Namespace:FANTOM
Definition:"An immature B cell of an intermediate stage between the pre-B cell stage and the mature naive stage with the phenotype surface IgM-positive and CD19-positive, and are subject to the process of B cell selection. A transitional B cell migrates from the bone marrow into the peripheral circulation, and then to the spleen." [GO_REF:0000031, GOC:add, ISBN:0781735149, PMID:12810111]
Synonyms: "T1 B cell" NARROW []
"T2 B cell" NARROW []
"T3 B cell" NARROW []
"transitional stage B lymphocyte" EXACT []
"transitional stage B-cell" EXACT []
"transitional stage B-lymphocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000236(B cell)
develops_from:CL:0000816(immature B cell)



Children


disjoint from:CL:0000785 (mature B cell)
develops from:CL:0000785 (mature B cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000818 (transitional stage B cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data