CL:0002250: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=intestinal crypt stem cell | |name=intestinal crypt stem cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2010-09-08T09:21:22Z | |obo_creation_date=2010-09-08T09:21:22Z | ||
|part_of=UBERON:0001983 | |part_of=UBERON:0001983 | ||
Latest revision as of 16:41, 12 September 2014
| Name: | intestinal crypt stem cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A cell that is found in a zone occupying the bottom region of the crypt; provide the source of most of the cell types of the intestinal epithelium; proliferate by mitotic division; differentiates into columnar or goblet cells." [GOC:tfm, ISBN:0517223651] | ||
| Xrefs: |
| ||
| Synonyms: | "stem cell of intestinal crypt of lieberkuhn" EXACT [] | ||
| Created by: | tmeehan | ||
| Creation date: | 2010-09-08T09:21:22Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000048(multi fate stem cell),CL:0002563(intestinal epithelial cell) |
|---|---|
| part_of: | UBERON:0001983(crypt of Lieberkuhn) |
Children
| derives from: | FF:0000079 (mouse Lgr5-positive intestinal epithelial stem cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 12228-129F5 (Lgr5 positive intestinal stem cells, pool1)
- 12229-129F6 (Lgr5 positive intestinal stem cells, pool2)
- 12230-129F7 (Lgr5 positive intestinal stem cells, pool3)
Mouse (Mus musculus)
- 12228-129F5 (Lgr5 positive intestinal stem cells, pool1)
- 12229-129F6 (Lgr5 positive intestinal stem cells, pool2)
- 12230-129F7 (Lgr5 positive intestinal stem cells, pool3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002250 (intestinal crypt stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:102248906..102248908,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr13:102248906..102248908, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:108091016..108091019,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr1:108091016..108091019, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:155378820..155378826,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr2:155378820..155378826, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:182877714..182877715,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr1:182877714..182877715, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr8:22371949..22371957,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p1@ENSMUST00000117139, p1@ENSMUST00000166375 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:155378820..155378826,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr2:155378820..155378826, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr16:96145917..96145922,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr16:96145917..96145922, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:65018091..65018099,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr5:65018091..65018099, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:65018091..65018099,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr5:65018091..65018099, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:182877714..182877715,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr1:182877714..182877715, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:108091016..108091019,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr1:108091016..108091019, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:111364133..111364137,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr9:111364133..111364137, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:102248906..102248908,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr13:102248906..102248908, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:80422367..80422374,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr14:80422367..80422374, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:42971307..42971324,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr11:42971307..42971324, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr16:96145917..96145922,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr16:96145917..96145922, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr8:22371949..22371957,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p1@ENSMUST00000117139, p1@ENSMUST00000166375 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:80422367..80422374,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr14:80422367..80422374, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:42971307..42971324,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr11:42971307..42971324, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:78304699..78304709,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr14:78304699..78304709, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:78304699..78304709,+#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr14:78304699..78304709, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:111364133..111364137,-#_a1c16c0c9c6bdce3507bcb652be2e972 | p@chr9:111364133..111364137, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr5:3270374..3270385,+#_ef8d0028d147ceb04dbf99b078c4499d | p@chr5:3270374..3270385, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr5:36717523..36717532,+#_ef8d0028d147ceb04dbf99b078c4499d | p@chr5:36717523..36717532, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr8:128443042..128443049,+#_ef8d0028d147ceb04dbf99b078c4499d | p@chr8:128443042..128443049, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr8:128443042..128443049,+#_ef8d0028d147ceb04dbf99b078c4499d | p@chr8:128443042..128443049, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr5:3270374..3270385,+#_ef8d0028d147ceb04dbf99b078c4499d | p@chr5:3270374..3270385, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr14:102240879..102240884,-#_ef8d0028d147ceb04dbf99b078c4499d | p@chr14:102240879..102240884, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr5:36717523..36717532,+#_ef8d0028d147ceb04dbf99b078c4499d | p@chr5:36717523..36717532, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr14:102240879..102240884,-#_ef8d0028d147ceb04dbf99b078c4499d | p@chr14:102240879..102240884, - |
| 6.04e-65 | FFCP PHASE1:Mm9::chr1:75125217..75125229,-#_a7dea70183b0c67abd7c63cf9d79908d | p@chr1:75125217..75125229, - |
| 6.04e-65 | FFCP PHASE2:Mm9::chr1:75125217..75125229,-#_a7dea70183b0c67abd7c63cf9d79908d | p@chr1:75125217..75125229, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr2:157917526..157917531,-#_865fc6f1f3d26c989127a9eb84c90f83 | p3@2010009K17Rik |
| 3.28e-58 | FFCP PHASE1:Mm9::chr1:138117307..138117311,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr1:138117307..138117311, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:26357393..26357396,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr2:26357393..26357396, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr6:125545038..125545041,-#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr6:125545038..125545041, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:157917526..157917531,-#_865fc6f1f3d26c989127a9eb84c90f83 | p3@2010009K17Rik |
| 3.28e-58 | FFCP PHASE1:Mm9::chr7:29588878..29588882,-#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr7:29588878..29588882, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr15:78517622..78517624,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr15:78517622..78517624, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr7:106310729..106310733,-#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr7:106310729..106310733, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr9:66889535..66889538,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr9:66889535..66889538, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr15:78517622..78517624,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr15:78517622..78517624, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr8:87181847..87181850,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr8:87181847..87181850, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr7:29588878..29588882,-#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr7:29588878..29588882, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr8:87181847..87181850,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr8:87181847..87181850, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr2:26357393..26357396,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr2:26357393..26357396, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr7:106310729..106310733,-#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr7:106310729..106310733, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr9:66889535..66889538,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr9:66889535..66889538, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr6:125545038..125545041,-#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr6:125545038..125545041, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr1:138117307..138117311,+#_865fc6f1f3d26c989127a9eb84c90f83 | p@chr1:138117307..138117311, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr3:126314780..126314810,-#_4f638c6126db21535cf8e4252a174727 | p@chr3:126314780..126314810, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr14:80421016..80421024,+#_4f638c6126db21535cf8e4252a174727 | p@chr14:80421016..80421024, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr14:80421016..80421024,+#_4f638c6126db21535cf8e4252a174727 | p@chr14:80421016..80421024, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr12:83223787..83223791,-#_4f638c6126db21535cf8e4252a174727 | p@chr12:83223787..83223791, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr12:83223787..83223791,-#_4f638c6126db21535cf8e4252a174727 | p@chr12:83223787..83223791, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr3:126314780..126314810,-#_4f638c6126db21535cf8e4252a174727 | p@chr3:126314780..126314810, - |
| 7.35e-53 | FFCP PHASE1:Mm9::chr2:72314053..72314057,+#_a6f262c4e3d0f7c9e2ea92131d764939 | p5@Cdca7 |
| 7.35e-53 | FFCP PHASE2:Mm9::chr14:80422038..80422047,+#_a6f262c4e3d0f7c9e2ea92131d764939 | p@chr14:80422038..80422047, + |
| 7.35e-53 | FFCP PHASE1:Mm9::chr14:80422038..80422047,+#_a6f262c4e3d0f7c9e2ea92131d764939 | p@chr14:80422038..80422047, + |
| 7.35e-53 | FFCP PHASE2:Mm9::chr2:72314053..72314057,+#_a6f262c4e3d0f7c9e2ea92131d764939 | p5@Cdca7 |
| 1.1e-52 | FFCP PHASE1:Mm9::chr5:32270354..32270364,-#_8f48c21a0f66c2fc21257c1777ba4967 | p@chr5:32270354..32270364, - |
| 1.1e-52 | FFCP PHASE2:Mm9::chr5:32270354..32270364,-#_8f48c21a0f66c2fc21257c1777ba4967 | p@chr5:32270354..32270364, - |
| 1.65e-52 | FFCP PHASE2:Mm9::chr1:189485998..189486010,+#_2ecbb6dc76a5516d82f323335e62bb4a | p@chr1:189485998..189486010, + |
| 1.65e-52 | FFCP PHASE1:Mm9::chr1:189485998..189486010,+#_2ecbb6dc76a5516d82f323335e62bb4a | p@chr1:189485998..189486010, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr5:29805170..29805178,-#_bc02ba793babd3af8995ab7ded80153a | p2@Mnx1 |
| 1.18e-44 | FFCP PHASE1:Mm9::chr12:86771033..86771037,-#_bc02ba793babd3af8995ab7ded80153a | p@chr12:86771033..86771037, - |
| 1.18e-44 | FFCP PHASE2:Mm9::chr2:71588140..71588152,-#_bc02ba793babd3af8995ab7ded80153a | p1@ENSMUST00000164635, p1@uc008kaz.1 |
| 1.18e-44 | FFCP PHASE2:Mm9::chr12:86771033..86771037,-#_bc02ba793babd3af8995ab7ded80153a | p@chr12:86771033..86771037, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chr4:138753652..138753654,+#_bc02ba793babd3af8995ab7ded80153a | p@chr4:138753652..138753654, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr2:71588140..71588152,-#_bc02ba793babd3af8995ab7ded80153a | p1@ENSMUST00000164635, p1@uc008kaz.1 |
| 1.18e-44 | FFCP PHASE2:Mm9::chr5:29805170..29805178,-#_bc02ba793babd3af8995ab7ded80153a | p2@Mnx1 |
| 1.18e-44 | FFCP PHASE2:Mm9::chr4:138753652..138753654,+#_bc02ba793babd3af8995ab7ded80153a | p@chr4:138753652..138753654, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chr2:146839658..146839668,+#_45eeb1e85c6e3a7d7d430abf06b93d58 | p@chr2:146839658..146839668, + |
| 1.66e-44 | FFCP PHASE2:Mm9::chr2:146839658..146839668,+#_45eeb1e85c6e3a7d7d430abf06b93d58 | p@chr2:146839658..146839668, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chr19:47655378..47655382,-#_45eeb1e85c6e3a7d7d430abf06b93d58 | p@chr19:47655378..47655382, - |
| 1.66e-44 | FFCP PHASE2:Mm9::chr19:47655378..47655382,-#_45eeb1e85c6e3a7d7d430abf06b93d58 | p@chr19:47655378..47655382, - |
| 2.33e-44 | FFCP PHASE1:Mm9::chr19:24589295..24589302,-#_4a2ba7c6555733dcf1156c5ce3a65a61 | p@chr19:24589295..24589302, - |
| 2.33e-44 | FFCP PHASE2:Mm9::chr19:24589295..24589302,-#_4a2ba7c6555733dcf1156c5ce3a65a61 | p@chr19:24589295..24589302, - |
| 1.7e-39 | FFCP PHASE2:Mm9::chr3:108115823..108115848,+#_ff305b8118660627391fbc9538eed4f4 | p@chr3:108115823..108115848, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr11:115705295..115705300,-#_ff305b8118660627391fbc9538eed4f4 | p@chr11:115705295..115705300, - |
| 1.7e-39 | FFCP PHASE2:Mm9::chr11:80603365..80603366,-#_ff305b8118660627391fbc9538eed4f4 | p@chr11:80603365..80603366, - |
| 1.7e-39 | FFCP PHASE2:Mm9::chr11:115705295..115705300,-#_ff305b8118660627391fbc9538eed4f4 | p@chr11:115705295..115705300, - |
| 1.7e-39 | FFCP PHASE2:Mm9::chr1:137077463..137077471,-#_ff305b8118660627391fbc9538eed4f4 | p@chr1:137077463..137077471, - |
| 1.7e-39 | FFCP PHASE1:Mm9::chr15:78675302..78675304,-#_ff305b8118660627391fbc9538eed4f4 | p@chr15:78675302..78675304, - |
| 1.7e-39 | FFCP PHASE1:Mm9::chr3:108115823..108115848,+#_ff305b8118660627391fbc9538eed4f4 | p@chr3:108115823..108115848, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr11:75825636..75825637,+#_ff305b8118660627391fbc9538eed4f4 | p@chr11:75825636..75825637, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr15:78675302..78675304,-#_ff305b8118660627391fbc9538eed4f4 | p@chr15:78675302..78675304, - |
| 1.7e-39 | FFCP PHASE2:Mm9::chr11:75825636..75825637,+#_ff305b8118660627391fbc9538eed4f4 | p@chr11:75825636..75825637, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr7:59266075..59266077,+#_ff305b8118660627391fbc9538eed4f4 | p@chr7:59266075..59266077, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr7:113260814..113260838,-#_ff305b8118660627391fbc9538eed4f4 | p@chr7:113260814..113260838, - |
| 1.7e-39 | FFCP PHASE1:Mm9::chr11:80603365..80603366,-#_ff305b8118660627391fbc9538eed4f4 | p@chr11:80603365..80603366, - |
| 1.7e-39 | FFCP PHASE1:Mm9::chr1:137077463..137077471,-#_ff305b8118660627391fbc9538eed4f4 | p@chr1:137077463..137077471, - |
| 1.7e-39 | FFCP PHASE2:Mm9::chr7:113260814..113260838,-#_ff305b8118660627391fbc9538eed4f4 | p@chr7:113260814..113260838, - |
| 1.7e-39 | FFCP PHASE1:Mm9::chr7:59266075..59266077,+#_ff305b8118660627391fbc9538eed4f4 | p@chr7:59266075..59266077, + |
| 4.15e-39 | FFCP PHASE2:Mm9::chr7:51170510..51170517,+#_7b236f63f1e98f06170b9699c238f396 | p@chr7:51170510..51170517, + |
| 4.15e-39 | FFCP PHASE1:Mm9::chr7:51170510..51170517,+#_7b236f63f1e98f06170b9699c238f396 | p@chr7:51170510..51170517, + |
| 4.15e-39 | FFCP PHASE1:Mm9::chr18:6136418..6136425,+#_7b236f63f1e98f06170b9699c238f396 | p@chr18:6136418..6136425, + |
| 4.15e-39 | FFCP PHASE2:Mm9::chr18:6136418..6136425,+#_7b236f63f1e98f06170b9699c238f396 | p@chr18:6136418..6136425, + |
| 1.17e-38 | FFCP PHASE1:Mm9::chr17:14386739..14386748,+#_6d94c6cbe2646f146f5d9baaea4d5fad | p@chr17:14386739..14386748, + |
| 1.17e-38 | FFCP PHASE1:Mm9::chr8:64192378..64192389,+#_6d94c6cbe2646f146f5d9baaea4d5fad | p@chr8:64192378..64192389, + |
