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CL:1000280: Difference between revisions

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Line 13: Line 13:
|located_in=
|located_in=
|name=smooth muscle cell of colon
|name=smooth muscle cell of colon
|namespace=cell
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001155
|part_of=UBERON:0001155

Latest revision as of 16:46, 12 September 2014

Name:smooth muscle cell of colon
Namespace:FANTOM
Definition:"A smooth muscle cell that is part of the colon." [GOC:tfm]
Xrefs:
links:
FMA:15663
Synonyms: "non-striated muscle fiber of colon" EXACT [FMA:15663]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:1000279(smooth muscle cell of large intestine)
part_of:UBERON:0001155(colon)



Children


derives from:FF:0000181 (human smooth muscle of colon sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000280 (smooth muscle cell of colon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data