Personal tools

DOID:3095: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=germ cell and embryonal cancer
|name=germ cell and embryonal cancer
|namespace=disease_ontology
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 16:50, 12 September 2014

Name:germ cell and embryonal cancer
Namespace:FANTOM
Definition:"A germ cell cancer that is derived_from a mixture of germs cells and embryonal cells." [url:http://en.wikipedia.org/wiki/Germ_cell]
Xrefs:
links:

MSH:D009373

UMLS_CUI:C0027658
Synonyms: "germ cell and embryonal neoplasm" RELATED []

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:DOID:2994(germ cell cancer)



Children


is a:FF:10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8),FF:10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14),FF:10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15),FF:10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II),DOID:171 (neuroectodermal tumor),DOID:3307 (teratoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3095 (germ cell and embryonal cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data