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DOID:3905: Difference between revisions

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|located_in=
|located_in=
|name=lung carcinoma
|name=lung carcinoma
|namespace=disease_ontology
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 16:51, 12 September 2014

Name:lung carcinoma
Namespace:FANTOM
Definition:"A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
Xrefs:
links:

NCI:C4878
OMIM:211980
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:187875007
SNOMEDCT_2010_1_31:269561006

UMLS_CUI:C0684249
Synonyms: "cancer of lung" EXACT [NCI2004_11_17:C4878]
"carcinoma OF LUNG" EXACT [MTH:460]
"carcinoma of lung" RELATED []
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
Comments:OMIM mapping confirmed by DO. [SN].

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:1324(lung cancer)



Children


is a:DOID:3908 (non-small cell lung carcinoma),DOID:5409 (lung small cell carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3905 (lung carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.75e-45FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
4.35e-40FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
4.35e-40FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
2.66e-30FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
3.09e-30FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.09e-30FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.59e-30FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
3.59e-30FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
7.5e-29FFCP PHASE2:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
7.5e-29FFCP PHASE1:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
8.14e-26FFCP PHASE1:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
8.14e-26FFCP PHASE2:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
3.17e-25FFCP PHASE2:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
3.17e-25FFCP PHASE1:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
2.62e-23FFCP PHASE2:Hg19::chr9:138393225..138393257,+#_ff13f51a990286586a726a44f2e602cap@chr9:138393225..138393257, +
2.62e-23FFCP PHASE1:Hg19::chr1:168756079..168756087,+#_ff13f51a990286586a726a44f2e602cap3@ENST00000420691
2.62e-23FFCP PHASE2:Hg19::chr3:78360347..78360353,+#_ff13f51a990286586a726a44f2e602cap@chr3:78360347..78360353, +
2.62e-23FFCP PHASE1:Hg19::chr18:6928495..6928520,-#_ff13f51a990286586a726a44f2e602cap2@LOC400643
2.62e-23FFCP PHASE2:Hg19::chr2:97626588..97626595,-#_ff13f51a990286586a726a44f2e602cap@chr2:97626588..97626595, -
2.62e-23FFCP PHASE1:Hg19::chr7:95775942..95775990,-#_ff13f51a990286586a726a44f2e602cap@chr7:95775942..95775990, -
2.62e-23FFCP PHASE2:Hg19::chr9:17454062..17454088,+#_ff13f51a990286586a726a44f2e602cap@chr9:17454062..17454088, +
2.62e-23FFCP PHASE2:Hg19::chr2:130564567..130564572,-#_ff13f51a990286586a726a44f2e602cap2@LOC100131048
2.62e-23FFCP PHASE1:Hg19::chr12:79756349..79756364,-#_ff13f51a990286586a726a44f2e602cap@chr12:79756349..79756364, -
2.62e-23FFCP PHASE2:Hg19::chr7:26482715..26482738,-#_ff13f51a990286586a726a44f2e602cap@chr7:26482715..26482738, -
2.62e-23FFCP PHASE2:Hg19::chr4:139019174..139019198,-#_ff13f51a990286586a726a44f2e602cap@chr4:139019174..139019198, -
2.62e-23FFCP PHASE2:Hg19::chr2:135169581..135169587,+#_ff13f51a990286586a726a44f2e602cap@chr2:135169581..135169587, +
2.62e-23FFCP PHASE2:Hg19::chr8:98103977..98103981,-#_ff13f51a990286586a726a44f2e602cap@chr8:98103977..98103981, -
2.62e-23FFCP PHASE1:Hg19::chr14:57127818..57127825,+#_ff13f51a990286586a726a44f2e602cap@chr14:57127818..57127825, +
2.62e-23FFCP PHASE1:Hg19::chr13:25269257..25269262,+#_ff13f51a990286586a726a44f2e602cap@chr13:25269257..25269262, +
2.62e-23FFCP PHASE2:Hg19::chr10:65730100..65730104,-#_ff13f51a990286586a726a44f2e602cap@chr10:65730100..65730104, -
2.62e-23FFCP PHASE1:Hg19::chr7:68735132..68735135,+#_ff13f51a990286586a726a44f2e602cap@chr7:68735132..68735135, +
2.62e-23FFCP PHASE2:Hg19::chr7:120379758..120379765,+#_ff13f51a990286586a726a44f2e602cap@chr7:120379758..120379765, +
2.62e-23FFCP PHASE2:Hg19::chr2:97626065..97626084,-#_ff13f51a990286586a726a44f2e602cap@chr2:97626065..97626084, -
2.62e-23FFCP PHASE1:Hg19::chr14:60194267..60194275,-#_ff13f51a990286586a726a44f2e602cap20@RTN1
2.62e-23FFCP PHASE2:Hg19::chr14:57127856..57127863,+#_ff13f51a990286586a726a44f2e602cap@chr14:57127856..57127863, +
2.62e-23FFCP PHASE2:Hg19::chr11:20362300..20362305,+#_ff13f51a990286586a726a44f2e602cap@chr11:20362300..20362305, +
2.62e-23FFCP PHASE2:Hg19::chr7:95766136..95766143,-#_ff13f51a990286586a726a44f2e602cap@chr7:95766136..95766143, -
2.62e-23FFCP PHASE2:Hg19::chr2:222127471..222127478,-#_ff13f51a990286586a726a44f2e602cap@chr2:222127471..222127478, -
2.62e-23FFCP PHASE2:Hg19::chr2:103235120..103235130,+#_ff13f51a990286586a726a44f2e602cap@chr2:103235120..103235130, +
2.62e-23FFCP PHASE2:Hg19::chr13:76563913..76563916,+#_ff13f51a990286586a726a44f2e602cap@chr13:76563913..76563916, +
2.62e-23FFCP PHASE1:Hg19::chr1:188874798..188874820,+#_ff13f51a990286586a726a44f2e602cap1@ENST00000445072
2.62e-23FFCP PHASE1:Hg19::chr19:46763326..46763349,+#_ff13f51a990286586a726a44f2e602cap@chr19:46763326..46763349, +
2.62e-23FFCP PHASE1:Hg19::chr7:26590581..26590596,-#_ff13f51a990286586a726a44f2e602cap@chr7:26590581..26590596, -
2.62e-23FFCP PHASE2:Hg19::chrX:105065622..105065627,+#_ff13f51a990286586a726a44f2e602cap@chrX:105065622..105065627, +
2.62e-23FFCP PHASE2:Hg19::chr8:98015654..98015697,-#_ff13f51a990286586a726a44f2e602cap@chr8:98015654..98015697, -
2.62e-23FFCP PHASE2:Hg19::chr6:125547084..125547089,+#_ff13f51a990286586a726a44f2e602cap@chr6:125547084..125547089, +
2.62e-23FFCP PHASE2:Hg19::chr1:188856590..188856595,-#_ff13f51a990286586a726a44f2e602cap4@ENST00000414765
2.62e-23FFCP PHASE2:Hg19::chr14:36966895..36966899,-#_ff13f51a990286586a726a44f2e602cap@chr14:36966895..36966899, -
2.62e-23FFCP PHASE1:Hg19::chrX:135761853..135761876,-#_ff13f51a990286586a726a44f2e602cap@chrX:135761853..135761876, -
2.62e-23FFCP PHASE2:Hg19::chr7:68735026..68735050,+#_ff13f51a990286586a726a44f2e602cap@chr7:68735026..68735050, +
2.62e-23FFCP PHASE1:Hg19::chr6:154858754..154858762,+#_ff13f51a990286586a726a44f2e602cap@chr6:154858754..154858762, +
2.62e-23FFCP PHASE2:Hg19::chrX:48394285..48394295,+#_ff13f51a990286586a726a44f2e602cap@chrX:48394285..48394295, +
2.62e-23FFCP PHASE2:Hg19::chr8:54464033..54464036,-#_ff13f51a990286586a726a44f2e602cap@chr8:54464033..54464036, -
2.62e-23FFCP PHASE2:Hg19::chr5:28571958..28571968,-#_ff13f51a990286586a726a44f2e602cap@chr5:28571958..28571968, -
2.62e-23FFCP PHASE2:Hg19::chr4:39301903..39301910,-#_ff13f51a990286586a726a44f2e602cap@chr4:39301903..39301910, -
2.62e-23FFCP PHASE2:Hg19::chr7:95776285..95776292,-#_ff13f51a990286586a726a44f2e602cap@chr7:95776285..95776292, -
2.62e-23FFCP PHASE1:Hg19::chr2:241625540..241625541,+#_ff13f51a990286586a726a44f2e602cap14@ENST00000407635
2.62e-23FFCP PHASE2:Hg19::chr3:87647430..87647437,-#_ff13f51a990286586a726a44f2e602cap@chr3:87647430..87647437, -
2.62e-23FFCP PHASE2:Hg19::chr20:13085064..13085070,+#_ff13f51a990286586a726a44f2e602cap@chr20:13085064..13085070, +
2.62e-23FFCP PHASE2:Hg19::chr16:13010590..13010593,+#_ff13f51a990286586a726a44f2e602cap@chr16:13010590..13010593, +
2.62e-23FFCP PHASE1:Hg19::chr14:36966895..36966899,-#_ff13f51a990286586a726a44f2e602cap@chr14:36966895..36966899, -
2.62e-23FFCP PHASE2:Hg19::chr10:129704382..129704389,+#_ff13f51a990286586a726a44f2e602cap@chr10:129704382..129704389, +
2.62e-23FFCP PHASE1:Hg19::chr10:129704512..129704515,+#_ff13f51a990286586a726a44f2e602cap@chr10:129704512..129704515, +
2.62e-23FFCP PHASE1:Hg19::chr8:116215335..116215378,+#_ff13f51a990286586a726a44f2e602cap@chr8:116215335..116215378, +
2.62e-23FFCP PHASE2:Hg19::chr8:97961449..97961460,-#_ff13f51a990286586a726a44f2e602cap@chr8:97961449..97961460, -
2.62e-23FFCP PHASE2:Hg19::chr3:150914192..150914197,+#_ff13f51a990286586a726a44f2e602cap@chr3:150914192..150914197, +
2.62e-23FFCP PHASE1:Hg19::chr21:26144899..26144920,-#_ff13f51a990286586a726a44f2e602cap@chr21:26144899..26144920, -
2.62e-23FFCP PHASE2:Hg19::chr1:181360920..181360925,+#_ff13f51a990286586a726a44f2e602cap@chr1:181360920..181360925, +
2.62e-23FFCP PHASE1:Hg19::chr8:98065877..98065881,-#_ff13f51a990286586a726a44f2e602cap@chr8:98065877..98065881, -
2.62e-23FFCP PHASE2:Hg19::chr7:44574327..44574332,-#_ff13f51a990286586a726a44f2e602cap@chr7:44574327..44574332, -
2.62e-23FFCP PHASE2:Hg19::chr5:134920622..134920655,+#_ff13f51a990286586a726a44f2e602cap@chr5:134920622..134920655, +
2.62e-23FFCP PHASE1:Hg19::chr12:133040060..133040064,+#_ff13f51a990286586a726a44f2e602cap@chr12:133040060..133040064, +
2.62e-23FFCP PHASE2:Hg19::chr16:7411388..7411391,+#_ff13f51a990286586a726a44f2e602cap@chr16:7411388..7411391, +
2.62e-23FFCP PHASE2:Hg19::chr11:98528704..98528712,+#_ff13f51a990286586a726a44f2e602cap@chr11:98528704..98528712, +

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