UBERON:0000158: Difference between revisions

Latest revision as of 17:06, 12 September 2014

Name:

membranous layer

Namespace:

FANTOM

Xrefs:

Expandlinks:

Synonyms:

"membranous organ component" EXACT [FMA:82500]

Ontology association Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies. link to ontology dataset data

Parents

is_a:	UBERON:0004923(organ component layer)

Children

is a:	UBERON:0005631 (extraembryonic membrane)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

11533-120A3 (Amniotic Epithelial Cells, donor1)
11547-120B8 (Mesenchymal Stem Cells - amniotic membrane, donor1)
11613-122A2 (Amniotic Epithelial Cells, donor2)
11627-122B7 (Mesenchymal Stem Cells - amniotic membrane, donor2)
11694-123A2 (Amniotic Epithelial Cells, donor3)
12235-129G3 (amniotic membrane cells, donor1)
12236-129G4 (amniotic membrane cells, donor2)
12237-129G5 (amniotic membrane cells, donor3)
12238-129G6 (chorionic membrane cells, donor1)
12239-129G7 (chorionic membrane cells, donor2)

... further results Mouse (Mus musculus)

11533-120A3 (Amniotic Epithelial Cells, donor1)
11547-120B8 (Mesenchymal Stem Cells - amniotic membrane, donor1)
11613-122A2 (Amniotic Epithelial Cells, donor2)
11627-122B7 (Mesenchymal Stem Cells - amniotic membrane, donor2)
11694-123A2 (Amniotic Epithelial Cells, donor3)
12235-129G3 (amniotic membrane cells, donor1)
12236-129G4 (amniotic membrane cells, donor2)
12237-129G5 (amniotic membrane cells, donor3)
12238-129G6 (chorionic membrane cells, donor1)
12239-129G7 (chorionic membrane cells, donor2)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000158 (membranous layer), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
7.64e-155	FFCP PHASE2:Hg19::chr3:55384975..55384986,-	p1@ENST00000469806
7.64e-155	FFCP PHASE1:Hg19::chr3:55384975..55384986,-	p1@ENST00000469806
6.02e-144	FFCP PHASE1:Hg19::chr11:8857295..8857310,-	p21@ST5
6.02e-144	FFCP PHASE2:Hg19::chr11:8857295..8857310,-	p21@ST5
7.71e-144	FFCP PHASE1:Hg19::chr11:8857248..8857269,-	p16@ST5
7.71e-144	FFCP PHASE2:Hg19::chr11:8857248..8857269,-	p16@ST5
6.53e-141	FFCP PHASE2:Hg19::chr2:237683156..237683171,+	p@chr2:237683156..237683171, +
6.53e-141	FFCP PHASE1:Hg19::chr2:237683156..237683171,+	p@chr2:237683156..237683171, +
1.35e-139	FFCP PHASE1:Hg19::chr19:36592982..36592993,+	p@chr19:36592982..36592993, +
1.35e-139	FFCP PHASE2:Hg19::chr19:36592982..36592993,+	p@chr19:36592982..36592993, +
1.05e-134	FFCP PHASE2:Hg19::chr11:8857215..8857232,-	p17@ST5
1.05e-134	FFCP PHASE1:Hg19::chr11:8857215..8857232,-	p17@ST5
1.43e-129	FFCP PHASE1:Hg19::chr15:68344995..68345013,+	p@chr15:68344995..68345013, +
1.43e-129	FFCP PHASE2:Hg19::chr15:68344995..68345013,+	p@chr15:68344995..68345013, +
1.6e-126	FFCP PHASE2:Hg19::chr2:237683212..237683239,+	p@chr2:237683212..237683239, +
1.6e-126	FFCP PHASE1:Hg19::chr2:237683212..237683239,+	p@chr2:237683212..237683239, +
1.01e-125	FFCP PHASE2:Hg19::chr2:25862154..25862172,-	p14@DTNB
1.01e-125	FFCP PHASE1:Hg19::chr2:25862154..25862172,-	p14@DTNB
6.97e-121	FFCP PHASE2:Hg19::chr2:237682954..237682971,+	p@chr2:237682954..237682971, +
6.97e-121	FFCP PHASE1:Hg19::chr2:237682954..237682971,+	p@chr2:237682954..237682971, +
8.75e-121	FFCP PHASE2:Hg19::chr2:237682990..237683009,+	p@chr2:237682990..237683009, +
8.75e-121	FFCP PHASE1:Hg19::chr2:237682990..237683009,+	p@chr2:237682990..237683009, +
8.22e-119	FFCP PHASE1:Hg19::chr19:36592925..36592948,+	p@chr19:36592925..36592948, +
8.22e-119	FFCP PHASE2:Hg19::chr19:36592925..36592948,+	p@chr19:36592925..36592948, +
2.31e-113	FFCP PHASE2:Hg19::chr18:6286777..6286797,+	p@chr18:6286777..6286797, +
2.31e-113	FFCP PHASE1:Hg19::chr18:6286777..6286797,+	p@chr18:6286777..6286797, +
7.03e-112	FFCP PHASE1:Hg19::chr17:2278441..2278454,+	p13@SGSM2
7.03e-112	FFCP PHASE2:Hg19::chr2:237683203..237683210,+	p@chr2:237683203..237683210, +
7.03e-112	FFCP PHASE1:Hg19::chr2:237683203..237683210,+	p@chr2:237683203..237683210, +
7.03e-112	FFCP PHASE2:Hg19::chr17:2278441..2278454,+	p13@SGSM2
7.87e-108	FFCP PHASE1:Hg19::chr11:1946293..1946319,+	p11@TNNT3
7.87e-108	FFCP PHASE2:Hg19::chr11:1946293..1946319,+	p11@TNNT3
3.01e-103	FFCP PHASE2:Hg19::chr6:12161831..12161855,+	p@chr6:12161831..12161855, +
3.01e-103	FFCP PHASE1:Hg19::chr6:12161831..12161855,+	p@chr6:12161831..12161855, +
4.29e-103	FFCP PHASE2:Hg19::chr20:61287795..61287809,+	p4@SLCO4A1
4.29e-103	FFCP PHASE1:Hg19::chr20:61287795..61287809,+	p4@SLCO4A1
4.86e-100	FFCP PHASE1:Hg19::chr13:43636294..43636306,+	p@chr13:43636294..43636306, +
4.86e-100	FFCP PHASE2:Hg19::chr13:43636294..43636306,+	p@chr13:43636294..43636306, +
1.22e-99	FFCP PHASE1:Hg19::chr19:36592910..36592917,+	p@chr19:36592910..36592917, +
1.22e-99	FFCP PHASE2:Hg19::chr19:36592910..36592917,+	p@chr19:36592910..36592917, +
1.22e-99	FFCP PHASE2:Hg19::chr10:134227398..134227410,+	p@chr10:134227398..134227410, +
1.22e-99	FFCP PHASE1:Hg19::chr10:134227398..134227410,+	p@chr10:134227398..134227410, +
1.38e-99	FFCP PHASE2:Hg19::chr2:191897854..191897865,-	p@chr2:191897854..191897865, -
1.38e-99	FFCP PHASE1:Hg19::chr2:191897854..191897865,-	p@chr2:191897854..191897865, -
1.57e-99	FFCP PHASE2:Hg19::chr17:2278481..2278491,+	p14@SGSM2
1.57e-99	FFCP PHASE1:Hg19::chr17:2278481..2278491,+	p14@SGSM2
2.03e-99	FFCP PHASE1:Hg19::chr6:31083761..31083775,-	p@chr6:31083761..31083775, -
2.03e-99	FFCP PHASE2:Hg19::chr6:31083761..31083775,-	p@chr6:31083761..31083775, -
2.63e-99	FFCP PHASE2:Hg19::chr2:237682972..237682977,+	p@chr2:237682972..237682977, +
2.63e-99	FFCP PHASE1:Hg19::chr2:237682972..237682977,+	p@chr2:237682972..237682977, +
4.6e-98	FFCP PHASE2:Hg19::chr10:131344593..131344605,+	p@chr10:131344593..131344605, +
4.6e-98	FFCP PHASE1:Hg19::chr10:131344593..131344605,+	p@chr10:131344593..131344605, +
4.6e-98	FFCP PHASE1:Hg19::chr20:61288222..61288232,+	p14@SLCO4A1
4.6e-98	FFCP PHASE2:Hg19::chr9:88126069..88126080,-	p@chr9:88126069..88126080, -
4.6e-98	FFCP PHASE1:Hg19::chr9:88126069..88126080,-	p@chr9:88126069..88126080, -
4.6e-98	FFCP PHASE2:Hg19::chr20:61288222..61288232,+	p14@SLCO4A1
4.6e-98	FFCP PHASE1:Hg19::chr20:61288249..61288259,+	p12@SLCO4A1
4.6e-98	FFCP PHASE2:Hg19::chr20:61288249..61288259,+	p12@SLCO4A1
4.6e-98	FFCP PHASE2:Hg19::chr14:104202639..104202646,-	p@chr14:104202639..104202646, -
4.6e-98	FFCP PHASE2:Hg19::chrX:48374277..48374289,+	p@chrX:48374277..48374289, +
4.6e-98	FFCP PHASE1:Hg19::chr14:104202639..104202646,-	p@chr14:104202639..104202646, -
4.6e-98	FFCP PHASE1:Hg19::chrX:48374277..48374289,+	p@chrX:48374277..48374289, +
1.4e-94	FFCP PHASE2:Hg19::chr17:38875395..38875406,-	p2@KRT223P
1.4e-94	FFCP PHASE1:Hg19::chr17:38875395..38875406,-	p2@KRT223P
7.56e-90	FFCP PHASE1:Hg19::chr19:36592959..36592975,+	p@chr19:36592959..36592975, +
7.56e-90	FFCP PHASE2:Hg19::chr19:36592959..36592975,+	p@chr19:36592959..36592975, +
1.9e-89	FFCP PHASE1:Hg19::chr2:237683038..237683048,+	p@chr2:237683038..237683048, +
1.9e-89	FFCP PHASE2:Hg19::chr2:237683038..237683048,+	p@chr2:237683038..237683048, +
1.43e-88	FFCP PHASE2:Hg19::chr5:128301279..128301283,+	p5@SLC27A6
1.43e-88	FFCP PHASE1:Hg19::chr5:128301279..128301283,+	p5@SLC27A6
1.36e-87	FFCP PHASE2:Hg19::chr17:38875358..38875392,-	p1@KRT223P
1.36e-87	FFCP PHASE1:Hg19::chr17:38875358..38875392,-	p1@KRT223P
2.47e-87	FFCP PHASE2:Hg19::chr11:1949886..1949907,+	p@chr11:1949886..1949907, +
2.47e-87	FFCP PHASE1:Hg19::chr11:1949886..1949907,+	p@chr11:1949886..1949907, +
2.93e-87	FFCP PHASE1:Hg19::chr1:147232669..147232676,-	p4@GJA5
2.93e-87	FFCP PHASE2:Hg19::chr1:147232669..147232676,-	p4@GJA5
8.19e-87	FFCP PHASE1:Hg19::chr11:122288906..122288919,-	p@chr11:122288906..122288919, -
8.19e-87	FFCP PHASE2:Hg19::chr11:122288906..122288919,-	p@chr11:122288906..122288919, -
1.58e-86	FFCP PHASE1:Mm9::chr5:125523411..125523420,-	p24@Ncor2
1.58e-86	FFCP PHASE2:Mm9::chr14:26461997..26462039,+	p@chr14:26461997..26462039, +
1.58e-86	FFCP PHASE2:Mm9::chr7:17798686..17798694,+	p@chr7:17798686..17798694, +
1.58e-86	FFCP PHASE1:Mm9::chrX:136335482..136335502,+	p3@Cldn2
1.58e-86	FFCP PHASE1:Mm9::chr5:114862554..114862564,+	p@chr5:114862554..114862564, +
1.58e-86	FFCP PHASE1:Mm9::chr7:17788797..17788806,+	p4@Psg29
1.58e-86	FFCP PHASE1:Mm9::chr1:71787899..71787904,-	p@chr1:71787899..71787904, -
1.58e-86	FFCP PHASE1:Mm9::chr13:27337674..27337690,+	p@chr13:27337674..27337690, +
1.58e-86	FFCP PHASE2:Mm9::chr13:61265572..61265576,-	p2@Ctsr
1.58e-86	FFCP PHASE2:Mm9::chr1:63260883..63260896,-	p3@Gpr1
1.58e-86	FFCP PHASE2:Mm9::chr13:27341334..27341356,-	p@chr13:27341334..27341356, -
1.58e-86	FFCP PHASE1:Mm9::chr13:27341334..27341356,-	p@chr13:27341334..27341356, -
1.58e-86	FFCP PHASE2:Mm9::chr15:78342035..78342046,-	p@chr15:78342035..78342046, -
1.58e-86	FFCP PHASE1:Mm9::chr9:111108246..111108253,+	p@chr9:111108246..111108253, +
1.58e-86	FFCP PHASE1:Mm9::chrX:136335507..136335518,+	p5@Cldn2
1.58e-86	FFCP PHASE1:Mm9::chr5:115211954..115211984,-	p@chr5:115211954..115211984, -
1.58e-86	FFCP PHASE2:Mm9::chr13:61040767..61040776,-	p@chr13:61040767..61040776, -
1.58e-86	FFCP PHASE1:Mm9::chr15:78342035..78342046,-	p@chr15:78342035..78342046, -
1.58e-86	FFCP PHASE1:Mm9::chr9:57927144..57927163,+	p19@Stra6
1.58e-86	FFCP PHASE1:Mm9::chr14:102036767..102036774,-	p@chr14:102036767..102036774, -
1.58e-86	FFCP PHASE2:Mm9::chr13:27335609..27335622,+	p@chr13:27335609..27335622, +
1.58e-86	FFCP PHASE2:Mm9::chr11:55223511..55223524,-	p@chr11:55223511..55223524, -

Showing 1 to 100 of 100 entries

@@ Line 13: / Line 13: @@
 |located_in=
 |name=membranous layer
-|namespace=
+|namespace=FANTOM
 |obo_creation_date=
 |part_of=

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UBERON:0000158: Difference between revisions

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Latest revision as of 17:06, 12 September 2014

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