Personal tools

UBERON:0000200: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 14: Line 14:
|located_in=
|located_in=
|name=gyrus
|name=gyrus
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001869
|part_of=UBERON:0001869

Latest revision as of 17:07, 12 September 2014

Name:gyrus
Namespace:FANTOM
Definition:"A ridge, generally surrounded by one or more sulci." [Wikipedia:Gyrus]
Xrefs:
links:

BTO:0002495
FMA:83874
ncithesaurus:Cerebral_Gyrus

SCTID:279165009
Synonyms: "cerebral gyrus" EXACT [BTO:0002495]
"gyri" RELATED PLURAL [BTO:0002495]
"gyri of cerebrum" RELATED PLURAL [BTO:0002495]
"gyrus of cerebrum" RELATED [BTO:0002495]
"gyrus of neuraxis" EXACT [FMA:83874]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000064(organ part),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0001869(cerebral hemisphere)



Children

is a:UBERON:0002581 (postcentral gyrus),UBERON:0002771 (middle temporal gyrus),UBERON:0007190 (paracentral gyrus),UBERON:0015593 (frontal gyrus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000200 (gyrus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data