UBERON:0001020: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 12: | Line 12: | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=commissure | |name=nervous system commissure | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:14, 12 September 2014
| Name: | nervous system commissure | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "White matter fiber bundle that crosses the midline of the brain or spinal cord[NIF]. The transverse connection between two longitudinal parts, e.g. nerves, tracheae. In the context of Drosophila refers to a broad band of axons connecting the same neuropils each side of the brain[FBbt]." ISBN:3110148986, Wikipedia:Commissure | ||
| Xrefs: |
| ||
| Synonyms: |
"commissure of neuraxis" EXACT [FMA:83906] "neuraxis commissure" EXACT [FMA:83906] | ||
| Comments: | *not* the same as FMA:76741 Commissure | ||
| Alt_id: | UBERON:FBbt_00005103-FMA_76741 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001018(axon tract) |
|---|
Children
| is a: | UBERON:0005970 (brain commissure) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10042-101F6 (corpus callosum, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001020 (nervous system commissure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr14:36462819..36462832,+#_99cbc12aaefe64a0a7d64e32b55fa410 | p@chr14:36462819..36462832, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr14:36462819..36462832,+#_99cbc12aaefe64a0a7d64e32b55fa410 | p@chr14:36462819..36462832, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:73689469..73689476,-#_99cbc12aaefe64a0a7d64e32b55fa410 | p@chr17:73689469..73689476, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr5:60927228..60927236,-#_99cbc12aaefe64a0a7d64e32b55fa410 | p3@BC032909, p3@BC032910 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr5:60927228..60927236,-#_99cbc12aaefe64a0a7d64e32b55fa410 | p3@BC032909, p3@BC032910 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr15:93827399..93827403,+#_99cbc12aaefe64a0a7d64e32b55fa410 | p@chr15:93827399..93827403, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr15:93827399..93827403,+#_99cbc12aaefe64a0a7d64e32b55fa410 | p@chr15:93827399..93827403, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:73689469..73689476,-#_99cbc12aaefe64a0a7d64e32b55fa410 | p@chr17:73689469..73689476, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr14:33926303..33926307,-#_53fb775105d59488b918110de4540133 | p@chr14:33926303..33926307, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr14:33926303..33926307,-#_53fb775105d59488b918110de4540133 | p@chr14:33926303..33926307, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_53fb775105d59488b918110de4540133 | p41@NAV3 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_53fb775105d59488b918110de4540133 | p41@NAV3 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:110248322..110248329,-#_53fb775105d59488b918110de4540133 | p@chr11:110248322..110248329, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:232548018..232548022,-#_53fb775105d59488b918110de4540133 | p@chr2:232548018..232548022, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:232548018..232548022,-#_53fb775105d59488b918110de4540133 | p@chr2:232548018..232548022, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:110248322..110248329,-#_53fb775105d59488b918110de4540133 | p@chr11:110248322..110248329, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:35788742..35788752,+#_04aa6881cf657bbfcc1f4bfd6214a9c3 | p@chr19:35788742..35788752, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:15374659..15374696,-#_04aa6881cf657bbfcc1f4bfd6214a9c3 | p10@SH3BP5 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:15374659..15374696,-#_04aa6881cf657bbfcc1f4bfd6214a9c3 | p10@SH3BP5 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:35788742..35788752,+#_04aa6881cf657bbfcc1f4bfd6214a9c3 | p@chr19:35788742..35788752, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr8:42037488..42037504,+#_1d1a42a686a1a0dd0dd9cd64dbf109f5 | p@chr8:42037488..42037504, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_1d1a42a686a1a0dd0dd9cd64dbf109f5 | p5@C10orf105 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr7:124391226..124391235,-#_1d1a42a686a1a0dd0dd9cd64dbf109f5 | p@chr7:124391226..124391235, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr17:72823919..72823924,-#_1d1a42a686a1a0dd0dd9cd64dbf109f5 | p@chr17:72823919..72823924, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr7:124391226..124391235,-#_1d1a42a686a1a0dd0dd9cd64dbf109f5 | p@chr7:124391226..124391235, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_1d1a42a686a1a0dd0dd9cd64dbf109f5 | p5@C10orf105 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr12:78359680..78359686,+#_1d1a42a686a1a0dd0dd9cd64dbf109f5 | p32@NAV3 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr12:78359680..78359686,+#_1d1a42a686a1a0dd0dd9cd64dbf109f5 | p32@NAV3 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr17:72823919..72823924,-#_1d1a42a686a1a0dd0dd9cd64dbf109f5 | p@chr17:72823919..72823924, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr8:42037488..42037504,+#_1d1a42a686a1a0dd0dd9cd64dbf109f5 | p@chr8:42037488..42037504, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:61043452..61043467,-#_d20b12d9defa295b6e7e9b5f929ffbb8 | p16@FAM13C |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:25012236..25012245,-#_d20b12d9defa295b6e7e9b5f929ffbb8 | p24@ARHGAP21 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr6:163681762..163681767,+#_d20b12d9defa295b6e7e9b5f929ffbb8 | p@chr6:163681762..163681767, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:61043452..61043467,-#_d20b12d9defa295b6e7e9b5f929ffbb8 | p16@FAM13C |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:25012236..25012245,-#_d20b12d9defa295b6e7e9b5f929ffbb8 | p24@ARHGAP21 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr6:163681762..163681767,+#_d20b12d9defa295b6e7e9b5f929ffbb8 | p@chr6:163681762..163681767, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p@chr7:129015806..129015815, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p26@PRLR |
| 4.66e-66 | FFCP PHASE1:Hg19::chr17:40120071..40120085,+#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p15@CNP |
| 4.66e-66 | FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p@chr7:129012882..129012891, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:174293011..174293022,-#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p@chr4:174293011..174293022, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr13:99135698..99135706,+#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p@chr13:99135698..99135706, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:645709..645712,+#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p15@PDE6B |
| 4.66e-66 | FFCP PHASE1:Hg19::chr13:99135698..99135706,+#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p@chr13:99135698..99135706, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr14:91199850..91199861,-#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p@chr14:91199850..91199861, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr14:91199850..91199861,-#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p@chr14:91199850..91199861, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:174293011..174293022,-#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p@chr4:174293011..174293022, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr8:101522298..101522305,-#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p@chr8:101522298..101522305, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:645709..645712,+#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p15@PDE6B |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p20@PRLR |
| 4.66e-66 | FFCP PHASE1:Hg19::chr8:101522298..101522305,-#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p@chr8:101522298..101522305, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr17:40120071..40120085,+#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p15@CNP |
| 4.66e-66 | FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p@chr7:129015806..129015815, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p20@PRLR |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p26@PRLR |
| 4.66e-66 | FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_5a5cf6e49d9fcdd927d4c0bc0f60079e | p@chr7:129012882..129012891, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:170571770..170571782,-#_af81898a99a0086591fba8c445b6717c | p2@LOC154449 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:170571770..170571782,-#_af81898a99a0086591fba8c445b6717c | p2@LOC154449 |
| 2.42e-50 | FFCP PHASE2:Hg19::chrX:103031196..103031205,-#_45ef571d4b45d257f2658976d630002d | p@chrX:103031196..103031205, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr12:106697974..106697990,-#_45ef571d4b45d257f2658976d630002d | p31@CKAP4 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr12:106697974..106697990,-#_45ef571d4b45d257f2658976d630002d | p31@CKAP4 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr19:15751984..15751994,+#_45ef571d4b45d257f2658976d630002d | p6@CYP4F3 |
| 2.42e-50 | FFCP PHASE1:Hg19::chrX:103031196..103031205,-#_45ef571d4b45d257f2658976d630002d | p@chrX:103031196..103031205, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr7:30202318..30202329,+#_45ef571d4b45d257f2658976d630002d | p@chr7:30202318..30202329, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr19:15751984..15751994,+#_45ef571d4b45d257f2658976d630002d | p6@CYP4F3 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr11:133996343..133996351,+#_45ef571d4b45d257f2658976d630002d | p8@JAM3 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr4:74005833..74005844,-#_45ef571d4b45d257f2658976d630002d | p@chr4:74005833..74005844, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr11:133996343..133996351,+#_45ef571d4b45d257f2658976d630002d | p8@JAM3 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr10:7454514..7454525,-#_45ef571d4b45d257f2658976d630002d | p@chr10:7454514..7454525, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr7:30202318..30202329,+#_45ef571d4b45d257f2658976d630002d | p@chr7:30202318..30202329, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr4:74005833..74005844,-#_45ef571d4b45d257f2658976d630002d | p@chr4:74005833..74005844, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr10:7454514..7454525,-#_45ef571d4b45d257f2658976d630002d | p@chr10:7454514..7454525, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:36726052..36726061,-#_609ed87f440c20869f0dedb19e68a9ed | p@chr17:36726052..36726061, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:45922629..45922637,+#_609ed87f440c20869f0dedb19e68a9ed | p@chr11:45922629..45922637, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:45922629..45922637,+#_609ed87f440c20869f0dedb19e68a9ed | p@chr11:45922629..45922637, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr6:164364681..164364684,-#_609ed87f440c20869f0dedb19e68a9ed | p@chr6:164364681..164364684, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr3:160203278..160203289,-#_609ed87f440c20869f0dedb19e68a9ed | p8@TRIM59 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr6:164364681..164364684,-#_609ed87f440c20869f0dedb19e68a9ed | p@chr6:164364681..164364684, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr3:160203278..160203289,-#_609ed87f440c20869f0dedb19e68a9ed | p8@TRIM59 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_609ed87f440c20869f0dedb19e68a9ed | p@chr9:20927844..20927855, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_609ed87f440c20869f0dedb19e68a9ed | p@chr9:20927844..20927855, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:36726052..36726061,-#_609ed87f440c20869f0dedb19e68a9ed | p@chr17:36726052..36726061, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chrX:28605300..28605301,+#_a20fd07cee0d65d08f163224e72f8a5d | p8@IL1RAPL1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr3:190578500..190578506,-#_a20fd07cee0d65d08f163224e72f8a5d | p@chr3:190578500..190578506, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr11:117585539..117585541,-#_a20fd07cee0d65d08f163224e72f8a5d | p@chr11:117585539..117585541, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr3:10706167..10706179,-#_a20fd07cee0d65d08f163224e72f8a5d | p@chr3:10706167..10706179, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chrX:28605300..28605301,+#_a20fd07cee0d65d08f163224e72f8a5d | p8@IL1RAPL1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr11:67190503..67190512,+#_a20fd07cee0d65d08f163224e72f8a5d | p8@CARNS1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr9:112191163..112191174,-#_a20fd07cee0d65d08f163224e72f8a5d | p10@PTPN3 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:219610931..219610941,+#_a20fd07cee0d65d08f163224e72f8a5d | p13@TTLL4 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr11:117585539..117585541,-#_a20fd07cee0d65d08f163224e72f8a5d | p@chr11:117585539..117585541, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr9:112191163..112191174,-#_a20fd07cee0d65d08f163224e72f8a5d | p10@PTPN3 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr11:67190503..67190512,+#_a20fd07cee0d65d08f163224e72f8a5d | p8@CARNS1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr6:133119649..133119655,-#_a20fd07cee0d65d08f163224e72f8a5d | p6@C6orf192 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:219610931..219610941,+#_a20fd07cee0d65d08f163224e72f8a5d | p13@TTLL4 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr12:99288459..99288464,-#_a20fd07cee0d65d08f163224e72f8a5d | p38@ANKS1B |
| 6.58e-50 | FFCP PHASE2:Hg19::chr12:99288459..99288464,-#_a20fd07cee0d65d08f163224e72f8a5d | p38@ANKS1B |
| 6.58e-50 | FFCP PHASE2:Hg19::chr4:7412700..7412704,+#_a20fd07cee0d65d08f163224e72f8a5d | p@chr4:7412700..7412704, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr6:133119649..133119655,-#_a20fd07cee0d65d08f163224e72f8a5d | p6@C6orf192 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr3:190578500..190578506,-#_a20fd07cee0d65d08f163224e72f8a5d | p@chr3:190578500..190578506, - |
