UBERON:0001434: Difference between revisions
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|located_in= | |located_in= | ||
|name=skeletal system | |name=skeletal system | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002204 | |part_of=UBERON:0002204 | ||
Latest revision as of 17:18, 12 September 2014
| Name: | skeletal system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Organ system subdivision which consists of the skeleton and the articular system.[FMA]" [AAO:0000566, FMA:FMA] | ||
| Xrefs: |
| ||
| Synonyms: |
"set of all bones and joints" NARROW SENSU [] "skeleton system" EXACT [] "Skelettsystem" RELATED [BTO:0001486] | ||
| Comments: | Note that GO defines skeletal system very generically: The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) GO:0001501; however, all annotations are to vertebrates | ||
| Alt_id: | UBERON:FMA_23875-FMA_23881-MA_0000018-MIAA_0000032-XAO_0003060-ZFA_0000434 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000467(anatomical system) |
|---|---|
| disjoint_from: | UBERON:0001474(bone element),UBERON:0002204(musculoskeletal system),UBERON:0002294(biliary system),UBERON:0002330(exocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system) |
| part_of: | UBERON:0002204(musculoskeletal system) |
Children
| disjoint from: | UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system),UBERON:0001004 (respiratory system),UBERON:0001007 (digestive system),UBERON:0001008 (renal system),UBERON:0001009 (circulatory system),UBERON:0001016 (nervous system),UBERON:0001033 (gustatory system) |
|---|---|
| part of: | UBERON:0000075 (subdivision of skeletal system),UBERON:0001474 (bone element),UBERON:0004288 (skeleton),UBERON:0004765 (skeletal element),UBERON:0004770 (articular system),UBERON:0008846 (skeletal ligament) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10192-103E3 (bone marrow, adult)
- 10195-103E6 (olfactory region, adult)
- 10264-104D3
- 10267-104D6
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
- 10320-105A5
- 10323-105A8
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
... further results Mouse (Mus musculus)
- 10192-103E3 (bone marrow, adult)
- 10195-103E6 (olfactory region, adult)
- 10264-104D3
- 10267-104D6
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
- 10320-105A5
- 10323-105A8
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001434 (skeletal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.22e-88 | FFCP PHASE2:Hg19::chr1:161187824..161187847,+#_b8fb1dc3c69368b3650732dc0aecdc7a | p@chr1:161187824..161187847, + |
| 5.22e-88 | FFCP PHASE1:Hg19::chr1:161187824..161187847,+#_b8fb1dc3c69368b3650732dc0aecdc7a | p@chr1:161187824..161187847, + |
| 1.6e-84 | FFCP PHASE1:Hg19::chr1:161188661..161188679,+#_40f568ef6a98d4da4b4cb418dc3115df | p@chr1:161188661..161188679, + |
| 1.6e-84 | FFCP PHASE2:Hg19::chr1:161188661..161188679,+#_40f568ef6a98d4da4b4cb418dc3115df | p@chr1:161188661..161188679, + |
| 3.06e-84 | FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_bda333b0b7fb872c9ebbb0a7b48c6d1c | p@chr16:50313426..50313459, + |
| 3.06e-84 | FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_bda333b0b7fb872c9ebbb0a7b48c6d1c | p@chr16:50313426..50313459, + |
| 2.31e-83 | FFCP PHASE2:Hg19::chr7:77050554..77050601,+#_259f6bfe43b31a3e2a2f77a5e9bc22b6 | p@chr7:77050554..77050601, + |
| 2.31e-83 | FFCP PHASE1:Hg19::chr7:77050554..77050601,+#_259f6bfe43b31a3e2a2f77a5e9bc22b6 | p@chr7:77050554..77050601, + |
| 7.38e-83 | FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_5d215e08e77c728ac215157ea88017ed | p7@EMILIN2 |
| 7.38e-83 | FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_5d215e08e77c728ac215157ea88017ed | p7@EMILIN2 |
| 3.86e-82 | FFCP PHASE2:Hg19::chr1:161188746..161188758,+#_a93cfd5d4cd17804ed28c681a231aeba | p@chr1:161188746..161188758, + |
| 3.86e-82 | FFCP PHASE1:Hg19::chr1:161188746..161188758,+#_a93cfd5d4cd17804ed28c681a231aeba | p@chr1:161188746..161188758, + |
| 3.87e-82 | FFCP PHASE2:Hg19::chr17:7482481..7482508,-#_aca3cc4a8525ee70a1fe49da68df0dfe | p@chr17:7482481..7482508, - |
| 3.87e-82 | FFCP PHASE1:Hg19::chr17:7482481..7482508,-#_aca3cc4a8525ee70a1fe49da68df0dfe | p@chr17:7482481..7482508, - |
| 3.14e-81 | FFCP PHASE2:Hg19::chr19:18288651..18288682,+#_34939878aaf05426d639c7f432e4f00f | p5@IFI30 |
| 3.14e-81 | FFCP PHASE1:Hg19::chr19:18288651..18288682,+#_34939878aaf05426d639c7f432e4f00f | p5@IFI30 |
| 1.7e-79 | FFCP PHASE1:Hg19::chr4:3387239..3387324,-#_0bc340a150597692010c3da40d81e99a | p@chr4:3387239..3387324, - |
| 1.7e-79 | FFCP PHASE2:Hg19::chr4:3387239..3387324,-#_0bc340a150597692010c3da40d81e99a | p@chr4:3387239..3387324, - |
| 2.9e-79 | FFCP PHASE2:Hg19::chr7:2832730..2832791,+#_617300c784aeedbec9f776477c70e711 | p@chr7:2832730..2832791, + |
| 2.9e-79 | FFCP PHASE1:Hg19::chr7:2832730..2832791,+#_617300c784aeedbec9f776477c70e711 | p@chr7:2832730..2832791, + |
| 5.36e-79 | FFCP PHASE2:Hg19::chr5:180242646..180242657,-#_bc3e474ce90ba89ac46a2c41981af839 | p15@MGAT1 |
| 5.36e-79 | FFCP PHASE1:Hg19::chr5:180242646..180242657,-#_bc3e474ce90ba89ac46a2c41981af839 | p15@MGAT1 |
| 3.48e-78 | FFCP PHASE1:Hg19::chr1:111743000..111743011,+#_d598be908f9f657841ad83ca22a72db3 | p8@CHI3L2 |
| 3.48e-78 | FFCP PHASE2:Hg19::chr1:111743000..111743011,+#_d598be908f9f657841ad83ca22a72db3 | p8@CHI3L2 |
| 3.72e-78 | FFCP PHASE2:Hg19::chr19:18288828..18288861,+#_ae71ebd8cc905eb042b783f55eb2cc74 | p7@IFI30 |
| 3.72e-78 | FFCP PHASE1:Hg19::chr19:18288828..18288861,+#_ae71ebd8cc905eb042b783f55eb2cc74 | p7@IFI30 |
| 5.03e-78 | FFCP PHASE1:Hg19::chr17:40168698..40168726,-#_19d12ebc48d08b6207caced3eb3e5d4f | p1@AK126179 |
| 5.03e-78 | FFCP PHASE2:Hg19::chr17:40168698..40168726,-#_19d12ebc48d08b6207caced3eb3e5d4f | p1@AK126179 |
| 2.92e-77 | FFCP PHASE1:Hg19::chr2:145429606..145429658,+#_0a67019169a7a7f4345806ccc5dbc935 | p@chr2:145429606..145429658, + |
| 2.92e-77 | FFCP PHASE2:Hg19::chr2:145429606..145429658,+#_0a67019169a7a7f4345806ccc5dbc935 | p@chr2:145429606..145429658, + |
| 1.44e-76 | FFCP PHASE1:Hg19::chr17:72542163..72542182,-#_f574d8e021e7f7acf47c71a399fb841c | p2@CD300C |
| 1.44e-76 | FFCP PHASE2:Hg19::chr17:72542163..72542182,-#_f574d8e021e7f7acf47c71a399fb841c | p2@CD300C |
| 1.96e-76 | FFCP PHASE1:Hg19::chr19:18286116..18286156,+#_1b952f09e9ff88ac58fa7f5f6daa9f73 | p@chr19:18286116..18286156, + |
| 1.96e-76 | FFCP PHASE2:Hg19::chr19:18286116..18286156,+#_1b952f09e9ff88ac58fa7f5f6daa9f73 | p@chr19:18286116..18286156, + |
| 5.23e-76 | FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_e26bc96e31cb890924e2d7bca655f033 | p1@CYP1B1-AS1 |
| 5.23e-76 | FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_e26bc96e31cb890924e2d7bca655f033 | p1@CYP1B1-AS1 |
| 1.18e-75 | FFCP PHASE2:Hg19::chr15:65174546..65174583,-#_b259dcc4857287c72e20e465059a896d | p@chr15:65174546..65174583, - |
| 1.18e-75 | FFCP PHASE1:Hg19::chr15:65174546..65174583,-#_b259dcc4857287c72e20e465059a896d | p@chr15:65174546..65174583, - |
| 1.51e-75 | FFCP PHASE2:Hg19::chr4:159727272..159727307,+#_6f48ac63d86c6a3f1cb35d319a538d30 | p7@FNIP2 |
| 1.51e-75 | FFCP PHASE1:Hg19::chr4:159727272..159727307,+#_6f48ac63d86c6a3f1cb35d319a538d30 | p7@FNIP2 |
| 2.32e-75 | FFCP PHASE2:Hg19::chr3:149531627..149531651,+#_ff7528f93dbb9d38ac3844f4439947cb | p7@RNF13 |
| 2.32e-75 | FFCP PHASE1:Hg19::chr3:149531627..149531651,+#_ff7528f93dbb9d38ac3844f4439947cb | p7@RNF13 |
| 3.02e-75 | FFCP PHASE1:Hg19::chr19:52299474..52299504,-#_73245971218a4642facdf635e67460a5 | p@chr19:52299474..52299504, - |
| 3.02e-75 | FFCP PHASE2:Hg19::chr19:52299474..52299504,-#_73245971218a4642facdf635e67460a5 | p@chr19:52299474..52299504, - |
| 3.37e-75 | FFCP PHASE1:Hg19::chr4:185314125..185314143,-#_dc9a8f2e7f44fe01bbe3943ff3e2c35a | p@chr4:185314125..185314143, - |
| 3.37e-75 | FFCP PHASE2:Hg19::chr4:185314125..185314143,-#_dc9a8f2e7f44fe01bbe3943ff3e2c35a | p@chr4:185314125..185314143, - |
| 3.49e-75 | FFCP PHASE2:Hg19::chr5:131280548..131280574,-#_a4ee29bf08abc170f72213d0cd871f42 | p1@ENST00000425320 |
| 3.49e-75 | FFCP PHASE1:Hg19::chr5:131280548..131280574,-#_a4ee29bf08abc170f72213d0cd871f42 | p1@ENST00000425320 |
| 6.13e-75 | FFCP PHASE2:Hg19::chr19:18288064..18288080,+#_07f01debd643cdfdf967c8595772b9a1 | p@chr19:18288064..18288080, + |
| 6.13e-75 | FFCP PHASE1:Hg19::chr19:18288064..18288080,+#_07f01debd643cdfdf967c8595772b9a1 | p@chr19:18288064..18288080, + |
| 2.26e-74 | FFCP PHASE2:Hg19::chr10:73648356..73648408,-#_4f1e54e6f8eed162d093a975e4dd2a31 | p@chr10:73648356..73648408, - |
| 2.26e-74 | FFCP PHASE1:Hg19::chr10:73648356..73648408,-#_4f1e54e6f8eed162d093a975e4dd2a31 | p@chr10:73648356..73648408, - |
| 2.87e-74 | FFCP PHASE2:Hg19::chr1:161188686..161188721,+#_470933509c1b77a3af91fa270dc2ff67 | p@chr1:161188686..161188721, + |
| 2.87e-74 | FFCP PHASE1:Hg19::chr1:161188686..161188721,+#_470933509c1b77a3af91fa270dc2ff67 | p@chr1:161188686..161188721, + |
| 3.62e-74 | FFCP PHASE2:Hg19::chr4:185314151..185314178,-#_5a623635a44db9539ee3adb3b61af175 | p@chr4:185314151..185314178, - |
| 3.62e-74 | FFCP PHASE1:Hg19::chr4:185314151..185314178,-#_5a623635a44db9539ee3adb3b61af175 | p@chr4:185314151..185314178, - |
| 4.15e-74 | FFCP PHASE1:Hg19::chr2:119726719..119726744,+#_b9ec632bd2dc2ccdf28bac896c05f791 | p@chr2:119726719..119726744, + |
| 4.15e-74 | FFCP PHASE2:Hg19::chr2:119726719..119726744,+#_b9ec632bd2dc2ccdf28bac896c05f791 | p@chr2:119726719..119726744, + |
| 5.35e-74 | FFCP PHASE1:Hg19::chr4:185314188..185314207,-#_eac542b7495c58d738e0aa4d5b1a2417 | p@chr4:185314188..185314207, - |
| 5.35e-74 | FFCP PHASE2:Hg19::chr4:185314188..185314207,-#_eac542b7495c58d738e0aa4d5b1a2417 | p@chr4:185314188..185314207, - |
| 1.29e-73 | FFCP PHASE2:Hg19::chr2:145276939..145276960,+#_54b98a33d474fb722ea5285782f2f5ff | p2@ZEB2-AS1 |
| 1.29e-73 | FFCP PHASE1:Hg19::chr2:145276939..145276960,+#_54b98a33d474fb722ea5285782f2f5ff | p2@ZEB2-AS1 |
| 1.68e-73 | FFCP PHASE1:Hg19::chrX:37664331..37664352,+#_7be6b321255c45fe5a68aef13c4847a1 | p@chrX:37664331..37664352, + |
| 1.68e-73 | FFCP PHASE2:Hg19::chrX:37664331..37664352,+#_7be6b321255c45fe5a68aef13c4847a1 | p@chrX:37664331..37664352, + |
| 1.8e-73 | FFCP PHASE1:Hg19::chr1:145610717..145610730,+#_ff341745ca5cbd8f3dc7e46ae43e56d8 | p4@RNF115 |
| 1.8e-73 | FFCP PHASE2:Hg19::chr1:145610717..145610730,+#_ff341745ca5cbd8f3dc7e46ae43e56d8 | p4@RNF115 |
| 1.87e-73 | FFCP PHASE2:Hg19::chr8:116588888..116588904,+#_855c0a9bb3b9531709fc4c525a102bbd | p@chr8:116588888..116588904, + |
| 1.87e-73 | FFCP PHASE1:Hg19::chr8:116588888..116588904,+#_855c0a9bb3b9531709fc4c525a102bbd | p@chr8:116588888..116588904, + |
| 2.59e-73 | FFCP PHASE2:Hg19::chr2:129283966..129283970,+#_d2560a29ff0e02991537e3913be85da5 | p@chr2:129283966..129283970, + |
| 2.59e-73 | FFCP PHASE1:Hg19::chr2:129283966..129283970,+#_d2560a29ff0e02991537e3913be85da5 | p@chr2:129283966..129283970, + |
| 3.0e-73 | FFCP PHASE1:Hg19::chrX:153286067..153286101,-#_0bc4faf23774ad57b40b4c4fa21ff151 | p@chrX:153286067..153286101, - |
| 3.0e-73 | FFCP PHASE2:Hg19::chrX:153286067..153286101,-#_0bc4faf23774ad57b40b4c4fa21ff151 | p@chrX:153286067..153286101, - |
| 3.74e-73 | FFCP PHASE1:Hg19::chr19:18288914..18288931,-#_a38e472aa970ce0248f70f4ab1db493b | p5@CU676849, p5@CU689079 |
| 3.74e-73 | FFCP PHASE2:Hg19::chr19:18288914..18288931,-#_a38e472aa970ce0248f70f4ab1db493b | p5@CU676849, p5@CU689079 |
| 3.98e-73 | FFCP PHASE1:Hg19::chr1:26602990..26603008,+#_83a92db549413285f9778b1f281745eb | p@chr1:26602990..26603008, + |
| 3.98e-73 | FFCP PHASE2:Hg19::chr1:26602990..26603008,+#_83a92db549413285f9778b1f281745eb | p@chr1:26602990..26603008, + |
| 4.47e-73 | FFCP PHASE1:Hg19::chr1:108593061..108593077,+#_c60e3753c2ec894c19888f14c33256f3 | p@chr1:108593061..108593077, + |
| 4.47e-73 | FFCP PHASE2:Hg19::chr1:108593061..108593077,+#_c60e3753c2ec894c19888f14c33256f3 | p@chr1:108593061..108593077, + |
| 5.41e-73 | FFCP PHASE2:Hg19::chr1:150724282..150724308,-#_4cc517d04d553c14feea0420f52cb2a8 | p8@CTSS |
| 5.41e-73 | FFCP PHASE1:Hg19::chr1:150724282..150724308,-#_4cc517d04d553c14feea0420f52cb2a8 | p8@CTSS |
| 1.14e-72 | FFCP PHASE2:Hg19::chr1:161188826..161188842,+#_554457fb0bef3cc72eeab9b429f35834 | p@chr1:161188826..161188842, + |
| 1.14e-72 | FFCP PHASE1:Hg19::chr1:161188826..161188842,+#_554457fb0bef3cc72eeab9b429f35834 | p@chr1:161188826..161188842, + |
| 3.78e-72 | FFCP PHASE2:Hg19::chr20:1517991..1518011,-#_dbfed40f66267c3a7a2e065b22572e4d | p@chr20:1517991..1518011, - |
| 3.78e-72 | FFCP PHASE1:Hg19::chr20:1517991..1518011,-#_dbfed40f66267c3a7a2e065b22572e4d | p@chr20:1517991..1518011, - |
| 5.08e-72 | FFCP PHASE2:Hg19::chr19:18285955..18285972,+#_34906eca045f8a5e168bf54e036318d3 | p@chr19:18285955..18285972, + |
| 5.08e-72 | FFCP PHASE1:Hg19::chr19:18285955..18285972,+#_34906eca045f8a5e168bf54e036318d3 | p@chr19:18285955..18285972, + |
| 1.2e-71 | FFCP PHASE1:Hg19::chr7:6066589..6066602,-#_59987aebe1e389a47fdd1c7a910aa25a | p4@EIF2AK1 |
| 1.2e-71 | FFCP PHASE2:Hg19::chr7:6066589..6066602,-#_59987aebe1e389a47fdd1c7a910aa25a | p4@EIF2AK1 |
| 1.4e-71 | FFCP PHASE1:Hg19::chr19:18288514..18288554,+#_46cadc8e285ae63e16eaba28d5bd8e46 | p6@IFI30 |
| 1.4e-71 | FFCP PHASE2:Hg19::chr19:18288514..18288554,+#_46cadc8e285ae63e16eaba28d5bd8e46 | p6@IFI30 |
| 1.48e-71 | FFCP PHASE1:Hg19::chr8:53373491..53373506,-#_95aabc22399274364cbfb86146a7b49f | p4@ST18 |
| 1.48e-71 | FFCP PHASE2:Hg19::chr8:53373491..53373506,-#_95aabc22399274364cbfb86146a7b49f | p4@ST18 |
| 1.68e-71 | FFCP PHASE1:Hg19::chr5:180242576..180242585,-#_52a1f993252bbd517847039839c49b86 | p12@MGAT1 |
| 1.68e-71 | FFCP PHASE2:Hg19::chr5:180242576..180242585,-#_52a1f993252bbd517847039839c49b86 | p12@MGAT1 |
| 1.69e-71 | FFCP PHASE2:Hg19::chr19:51625924..51625942,+#_bc93acf21881b6837078a2c25c74a48f | p@chr19:51625924..51625942, + |
| 1.69e-71 | FFCP PHASE1:Hg19::chr19:51625924..51625942,+#_bc93acf21881b6837078a2c25c74a48f | p@chr19:51625924..51625942, + |
| 2.0e-71 | FFCP PHASE2:Hg19::chr17:7483714..7483726,+#_efa5568338d71098ccddca5916a2292c | p@chr17:7483714..7483726, + |
| 2.0e-71 | FFCP PHASE1:Hg19::chr17:7483714..7483726,+#_efa5568338d71098ccddca5916a2292c | p@chr17:7483714..7483726, + |
| 2.47e-71 | FFCP PHASE2:Hg19::chr4:185266972..185267007,+#_a4e85fb73ca77f3485efa4eb871d275e | p@chr4:185266972..185267007, + |
| 2.47e-71 | FFCP PHASE1:Hg19::chr4:185266972..185267007,+#_a4e85fb73ca77f3485efa4eb871d275e | p@chr4:185266972..185267007, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical system consisting of multiple elements and tissues that provides physical support.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical system that is a multi-element, multi-tissue anatomical cluster that consists of the skeleton and the articular system.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "System that provides physical support to the organism.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
