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UBERON:0001896: Difference between revisions

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|located_in=
|located_in=
|name=medulla oblongata
|name=medulla oblongata
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0002028;;UBERON:0002298;;UBERON:0005290
|part_of=UBERON:0002028;;UBERON:0002298;;UBERON:0005290

Latest revision as of 17:22, 12 September 2014

Name:medulla oblongata
Namespace:FANTOM
Definition:"Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, Wikipedia:Bone_marrow_of_ovary_oblongata]
Xrefs:
links:

AAO:0010486
ABA:MY
BTO:0000041
EFO:0000924
EHDAA2:0001088
EHDAA:7588
EMAPA:17550
EV:0100275
FMA:62004
GAID:590
[1]
MA:0000206
MAT:0000111
MAT:0000367
MESH:A.08.186.211.132.810.406
MIAA:0000111
ncithesaurus:Medulla_Oblongata
NIF_GrossAnatomy:birnlex_957
OpenCyc:Mx4rvVjxSJwpEbGdrcN5Y29ycA
OpenCyc:Mx4rwCqnXJwpEbGdrcN5Y29ycA
SCTID:279104005
TAO:0000545
VHOG:0000181
XAO:0003100

ZFA:0000545
Synonyms: "bulb" BROAD []
"bulbus" EXACT [FMA:62004, FMA:TA]
"medulla" BROAD [ABA:MY]
"medulla oblonzata" RELATED LATIN [Wikipedia:Medulla_oblongata]
"metepencephalon" RELATED [FMA:62004]
Alt_id: UBERON:FMA_62004-MA_0000206-MIAA_0000111-XAO_0003100-ZFA_0000545
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000064(organ part),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0002028(hindbrain),UBERON:0002298(brainstem),UBERON:0005290(myelencephalon)



Children

is a:FF:10361-105F1 (medulla oblongata, newborn, donor10223)
derives from:FF:0010038 (human medulla oblongata - adult sample),FF:0011284 (mouse medulla oblongata- adult sample),FF:0011465 (mouse medulla oblongata- neonate N30 sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001896 (medulla oblongata), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Posterior portion of the hindbrain which controls respiration, heartbeat, digestion, and swallowing as well as some locomotor responses.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.