UBERON:0001995: Difference between revisions
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|located_in= | |located_in= | ||
|name=fibrocartilage | |name=fibrocartilage | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:23, 12 September 2014
| Name: | fibrocartilage | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Cartilage tissue intermediate between hyaline cartilage and dense connective tissue; contains of abundant collagen fibers; chondrocytes often arranged in columns[VSAO]. A mixture of white fibrous tissue and cartilaginous tissue in various proportions. It owes its flexibility and toughness to the former of these constituents, and its elasticity to the latter. It is the only type of cartilage that contains type I collagen in addition to the normal type II[WP]. Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel without a well-defined perichondrium[FMA]." [FMA:64784, VSAO:0000103, Wikipedia:Fibrocartilage] | ||
| Xrefs: |
| ||
| Comments: | The white fibrocartilages admit of arrangement into four groups遯ｶ逅ｶnterarticular, connecting, circumferential, and stratiform -- WP. TODO: add mineralized | ||
| Alt_id: | UBERON:FMA_64784-MA_0000108 | ||
| Subset: | uberon_slim |
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Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002418(cartilage tissue) |
|---|
Children
| is a: | UBERON:0006444 (annulus fibrosus) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11463-119B5 (Anulus Pulposus Cell, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001995 (fibrocartilage), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.68e-99 | FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_10864a32a4801fd0f053c5e93afb7c9e | p5@PTGFR |
| 5.68e-99 | FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_10864a32a4801fd0f053c5e93afb7c9e | p5@PTGFR |
| 1.55e-98 | FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_38c4065d531607dc6f941c13ff673639 | p@chr13:24914614..24914622, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_38c4065d531607dc6f941c13ff673639 | p@chr13:24914614..24914622, - |
| 2.34e-79 | FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_cf7f20fb091d2243029b5ba1dd2760d5 | p@chr9:114135497..114135526, - |
| 2.34e-79 | FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_cf7f20fb091d2243029b5ba1dd2760d5 | p@chr9:114135497..114135526, - |
| 1.45e-66 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_da823eeea2e97f058396ce5e7bb99d1c | p@chr3:174737010..174737023, + |
| 1.45e-66 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_da823eeea2e97f058396ce5e7bb99d1c | p@chr3:174737010..174737023, + |
| 2.84e-66 | FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_0fa265afc817956f71703f7cacdb8dcc | p@chr2:241897189..241897221, - |
| 2.84e-66 | FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_0fa265afc817956f71703f7cacdb8dcc | p@chr2:241897189..241897221, - |
| 1.13e-57 | FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_e88b2246d02b1f805c9a9b2b62d470eb | p3@PAX1 |
| 1.13e-57 | FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_e88b2246d02b1f805c9a9b2b62d470eb | p@chr10:81923378..81923389, - |
| 1.13e-57 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_e88b2246d02b1f805c9a9b2b62d470eb | p4@PAX1 |
| 1.13e-57 | FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_e88b2246d02b1f805c9a9b2b62d470eb | p@chr10:81923378..81923389, - |
| 1.13e-57 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_e88b2246d02b1f805c9a9b2b62d470eb | p4@PAX1 |
| 1.13e-57 | FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_e88b2246d02b1f805c9a9b2b62d470eb | p3@PAX1 |
| 1.14e-50 | FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_858f989291147beddd38f7b493069d16 | p3@NKX3-2 |
| 1.14e-50 | FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_858f989291147beddd38f7b493069d16 | p3@NKX3-2 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_e81797858c0c7bf1a02d29a7143cf4fb | p4@NKX3-2 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_e81797858c0c7bf1a02d29a7143cf4fb | p4@NKX3-2 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr16:4421890..4421912,-#_bcf0b56b2310fd5038a3e3ad34464dcf | p@chr16:4421890..4421912, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr16:4421890..4421912,-#_bcf0b56b2310fd5038a3e3ad34464dcf | p@chr16:4421890..4421912, - |
| 3.19e-45 | FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_867dd4387f6c86c1ebb45ac654e578b2 | p@chr2:241897125..241897142, - |
| 3.19e-45 | FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_867dd4387f6c86c1ebb45ac654e578b2 | p@chr2:241897125..241897142, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_c2c85d5ff902a1fb42e4ce117dc42487 | p@chr3:80727046..80727051, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_c2c85d5ff902a1fb42e4ce117dc42487 | p@chr3:80727046..80727051, - |
| 5.99e-41 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_d59de1de4c10df6e0e59e3ad2c218677 | p@chr5:30104176..30104187, - |
| 5.99e-41 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_d59de1de4c10df6e0e59e3ad2c218677 | p@chr5:30104176..30104187, - |
| 3.01e-40 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_628c3dc43f0f8e39be070f8324431629 | p@chr1:19778678..19778689, - |
| 3.01e-40 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_628c3dc43f0f8e39be070f8324431629 | p@chr1:19778678..19778689, - |
| 1.3e-37 | FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_224440c77e5add18800cf96248de5c9b | p@chr20:21695435..21695452, + |
| 1.3e-37 | FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_224440c77e5add18800cf96248de5c9b | p@chr20:21695435..21695452, + |
| 3.94e-37 | FFCP PHASE2:Hg19::chr16:70795228..70795237,+#_6fb0ca073b96730c7c847ee0d482fa3f | p@chr16:70795228..70795237, + |
| 3.94e-37 | FFCP PHASE1:Hg19::chr16:70795228..70795237,+#_6fb0ca073b96730c7c847ee0d482fa3f | p@chr16:70795228..70795237, + |
| 8.2e-37 | FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_83881af1a61fbef6082456c4b36fb94f | p1@uc010aki.1 |
| 8.2e-37 | FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_83881af1a61fbef6082456c4b36fb94f | p1@uc010aki.1 |
| 1.18e-36 | FFCP PHASE1:Hg19::chr8:27455513..27455516,+#_26c35ec6483f0fba01cc26cff47aee2a | p7@CU679734 |
| 1.18e-36 | FFCP PHASE2:Hg19::chr8:27455513..27455516,+#_26c35ec6483f0fba01cc26cff47aee2a | p7@CU679734 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_17f4b949ef8eae7e967df1038ce138eb | p3@uc010aki.1 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_17f4b949ef8eae7e967df1038ce138eb | p3@uc010aki.1 |
| 8.05e-30 | FFCP PHASE2:Hg19::chr11:66724317..66724340,-#_4984ce18d42359a2a53afd7bcbdca601 | p@chr11:66724317..66724340, - |
| 8.05e-30 | FFCP PHASE1:Hg19::chr11:66724317..66724340,-#_4984ce18d42359a2a53afd7bcbdca601 | p@chr11:66724317..66724340, - |
| 2.22e-29 | FFCP PHASE2:Hg19::chr2:53161632..53161661,-#_c4198bcce76b8922b336a308a9b874e9 | p@chr2:53161632..53161661, - |
| 2.22e-29 | FFCP PHASE1:Hg19::chr2:53161632..53161661,-#_c4198bcce76b8922b336a308a9b874e9 | p@chr2:53161632..53161661, - |
| 5.41e-28 | FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_7ce29419ef75f330425168994cbac515 | p15@SNED1 |
| 5.41e-28 | FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_7ce29419ef75f330425168994cbac515 | p15@SNED1 |
| 7.1e-28 | FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_a28ae4e59a5462693944c19aef901a44 | p20@CAPZB |
| 7.1e-28 | FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_a28ae4e59a5462693944c19aef901a44 | p20@CAPZB |
| 2.09e-27 | FFCP PHASE2:Hg19::chr8:25337491..25337504,+#_7f661acc43092c890ad1f36df6f860ba | p@chr8:25337491..25337504, + |
| 2.09e-27 | FFCP PHASE1:Hg19::chr8:25337491..25337504,+#_7f661acc43092c890ad1f36df6f860ba | p@chr8:25337491..25337504, + |
| 3.59e-26 | FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_11783b169cda9bf903428f2eefa3b36f | p@chr2:241897363..241897398, + |
| 3.59e-26 | FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_11783b169cda9bf903428f2eefa3b36f | p@chr2:241897363..241897398, + |
| 3.89e-25 | FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_42c62956b9455394d9671fa85390e0f5 | p10@SYNJ2 |
| 3.89e-25 | FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_42c62956b9455394d9671fa85390e0f5 | p10@SYNJ2 |
| 5.58e-25 | FFCP PHASE2:Hg19::chr7:18832801..18832816,+#_1003359c34b5418d0aaaf52c09e287eb | p21@HDAC9 |
| 5.58e-25 | FFCP PHASE1:Hg19::chr7:18832801..18832816,+#_1003359c34b5418d0aaaf52c09e287eb | p21@HDAC9 |
| 1.02e-24 | FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_a6bdf3d03285beccbce8b60839550d55 | p@chr9:16138889..16138902, - |
| 1.02e-24 | FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_a6bdf3d03285beccbce8b60839550d55 | p@chr9:16138889..16138902, - |
| 1.45e-24 | FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_3f3e66b8b46a299f41cd564e028c5629 | p@chr2:241938405..241938416, + |
| 1.45e-24 | FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_3f3e66b8b46a299f41cd564e028c5629 | p@chr2:241938405..241938416, + |
| 2.34e-24 | FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_292e669399b41c072cf1dbcd3dd6f914 | p2@ENST00000518706 |
| 2.34e-24 | FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_292e669399b41c072cf1dbcd3dd6f914 | p2@ENST00000518706 |
| 6.77e-24 | FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_d2c8e76c8f351de9ff8c9c438a2d5c46 | p1@ENST00000436845 |
| 6.77e-24 | FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_d2c8e76c8f351de9ff8c9c438a2d5c46 | p1@ENST00000436845 |
| 8.02e-24 | FFCP PHASE2:Hg19::chr17:38655950..38655954,+#_27f5875d3dcd9ad79692dd238aa7fe8e | p@chr17:38655950..38655954, + |
| 8.02e-24 | FFCP PHASE1:Hg19::chr17:38655950..38655954,+#_27f5875d3dcd9ad79692dd238aa7fe8e | p@chr17:38655950..38655954, + |
| 1.13e-23 | FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_8dc8890acb2cd3f0923ba4a65438ae28 | p6@SIX4 |
| 1.13e-23 | FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_8dc8890acb2cd3f0923ba4a65438ae28 | p6@SIX4 |
| 1.78e-23 | FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_aa28eae7bb7da071ef74fd228616de4f | p1@ENST00000413519 |
| 1.78e-23 | FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_aa28eae7bb7da071ef74fd228616de4f | p1@ENST00000413519 |
| 1.14e-21 | FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_3cbb9c10b8a312c2e1934094aded9e51 | p6@CCDC86 |
| 1.14e-21 | FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_3cbb9c10b8a312c2e1934094aded9e51 | p6@CCDC86 |
| 1.53e-21 | FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_93a1b883ca187e79b06e3dfaea5bb004 | p19@HDAC9 |
| 1.53e-21 | FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_93a1b883ca187e79b06e3dfaea5bb004 | p19@HDAC9 |
| 3.47e-21 | FFCP PHASE2:Hg19::chr20:30181389..30181408,+#_d0d6628686a8106b9dc327bf14b10506 | p@chr20:30181389..30181408, + |
| 3.47e-21 | FFCP PHASE1:Hg19::chr20:30181389..30181408,+#_d0d6628686a8106b9dc327bf14b10506 | p@chr20:30181389..30181408, + |
| 3.81e-21 | FFCP PHASE2:Hg19::chr3:158384350..158384362,-#_6ccb323265cb9aee7c0b2ec5f2cddcf1 | p@chr3:158384350..158384362, - |
| 3.81e-21 | FFCP PHASE1:Hg19::chr3:158384350..158384362,-#_6ccb323265cb9aee7c0b2ec5f2cddcf1 | p@chr3:158384350..158384362, - |
| 4.66e-21 | FFCP PHASE2:Hg19::chr18:12012068..12012098,+#_b54d694840ab16ad9497605a3aff1455 | p@chr18:12012068..12012098, + |
| 4.66e-21 | FFCP PHASE1:Hg19::chr18:12012068..12012098,+#_b54d694840ab16ad9497605a3aff1455 | p@chr18:12012068..12012098, + |
| 5.2e-21 | FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_5bee2e52d26e18d081acca2e8ab9b019 | p@chr7:158224707..158224729, - |
| 5.2e-21 | FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_5bee2e52d26e18d081acca2e8ab9b019 | p@chr7:158224707..158224729, - |
| 6.96e-21 | FFCP PHASE2:Hg19::chr2:158345440..158345449,-#_3361c9162cdfbd224df5f605d6414b8b | p9@CYTIP |
| 6.96e-21 | FFCP PHASE1:Hg19::chr2:158345440..158345449,-#_3361c9162cdfbd224df5f605d6414b8b | p9@CYTIP |
| 6.96e-21 | FFCP PHASE2:Hg19::chr11:108743668..108743675,+#_3361c9162cdfbd224df5f605d6414b8b | p@chr11:108743668..108743675, + |
| 6.96e-21 | FFCP PHASE1:Hg19::chr11:108743668..108743675,+#_3361c9162cdfbd224df5f605d6414b8b | p@chr11:108743668..108743675, + |
| 8.49e-21 | FFCP PHASE2:Hg19::chr6:158490395..158490407,+#_ca84713ff7c4466f979fa58ed7df3f54 | p9@SYNJ2 |
| 8.49e-21 | FFCP PHASE1:Hg19::chr6:158490395..158490407,+#_ca84713ff7c4466f979fa58ed7df3f54 | p9@SYNJ2 |
| 2.74e-20 | FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_fcabdf4cf9557716bfcc8d1df1d9ba7c | p@chr1:65888177..65888194, + |
| 2.74e-20 | FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_fcabdf4cf9557716bfcc8d1df1d9ba7c | p@chr1:65888177..65888194, + |
| 1.64e-19 | FFCP PHASE2:Hg19::chr19:14223369..14223385,-#_242b3145e30869fe254c85fdc8325864 | p5@PRKACA |
| 1.64e-19 | FFCP PHASE1:Hg19::chr19:14223369..14223385,-#_242b3145e30869fe254c85fdc8325864 | p5@PRKACA |
| 2.38e-19 | FFCP PHASE2:Hg19::chr9:113798560..113798572,-#_714e81ec7f1b26e825d5cbc1a1523f73 | p34@LPAR1 |
| 2.38e-19 | FFCP PHASE1:Hg19::chr9:113798560..113798572,-#_714e81ec7f1b26e825d5cbc1a1523f73 | p34@LPAR1 |
| 4.53e-19 | FFCP PHASE2:Hg19::chr17:73688878..73688882,+#_876e2039ebbb8247e69f79ea20f8dec7 | p@chr17:73688878..73688882, + |
| 4.53e-19 | FFCP PHASE1:Hg19::chr17:73688878..73688882,+#_876e2039ebbb8247e69f79ea20f8dec7 | p@chr17:73688878..73688882, + |
| 6.53e-19 | FFCP PHASE1:Hg19::chr3:58572689..58572703,-#_77402ce541fe4f078c2c8cfbf82dfe8f | p6@FAM107A |
| 6.53e-19 | FFCP PHASE2:Hg19::chr3:58572689..58572703,-#_77402ce541fe4f078c2c8cfbf82dfe8f | p6@FAM107A |
| 7.03e-19 | FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_13f58d9228aca027decb6226093a849a | p1@MGC27382 |
| 7.03e-19 | FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_13f58d9228aca027decb6226093a849a | p1@MGC27382 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Cartilage tissue intermediate between hyaline cartilage and dense connective tissue; contains of abundant collagen fibers; chondrocytes often arranged in columns.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
