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|located_in=
|located_in=
|name=vestibulo-auditory system
|name=vestibulo-auditory system
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 17:26, 12 September 2014

Name:vestibulo-auditory system
Namespace:FANTOM
Definition:"A sensory system for the sense of hearing[WP]." [Wikipedia:Auditory_system]
Xrefs:
links:

AAO:0000631
FMA:7192
FMA:78500
[1]
[2]
MA:0002443
ncithesaurus:Auditory_System
NIF_GrossAnatomy:nlx_anat_090817
OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA
TAO:0001138
XAO:0003195

ZFA:0001138
Synonyms: "auditory organ system" EXACT []
"auditory system" RELATED []
"auditory/vestibular system" RELATED []
"vestibuloauditory system" EXACT []
"vestibuloauditory system" RELATED []
Comments:Auditory system is general anatomical term in FMA
Alt_id: UBERON:FMA_7192-MA_0002443
Subset: functional_classification
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001032(sensory system)



Children

part of:UBERON:0001690 (ear),UBERON:0002827 (vestibulocochlear ganglion),UBERON:0004681 (vestibular system),UBERON:0016490 (auditory system)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 11959-126C6 (Neurons - spiral ganglion, pool1)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002105 (vestibulo-auditory system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_c61890a629f48235895cf0426ce3701cp@chr6:86746562..86746579, -
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_c61890a629f48235895cf0426ce3701cp@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_c61890a629f48235895cf0426ce3701cp5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_c61890a629f48235895cf0426ce3701cp7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_c61890a629f48235895cf0426ce3701cp@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_c61890a629f48235895cf0426ce3701cp@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_c61890a629f48235895cf0426ce3701cp@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_c61890a629f48235895cf0426ce3701cp2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_c61890a629f48235895cf0426ce3701cp1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_c61890a629f48235895cf0426ce3701cp@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_c61890a629f48235895cf0426ce3701cp@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_c61890a629f48235895cf0426ce3701cp3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_c61890a629f48235895cf0426ce3701cp1@Otog
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_c61890a629f48235895cf0426ce3701cp2@Strc
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_c61890a629f48235895cf0426ce3701cp@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_c61890a629f48235895cf0426ce3701cp@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_c61890a629f48235895cf0426ce3701cp@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_c61890a629f48235895cf0426ce3701cp7@Glt25d2
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_c61890a629f48235895cf0426ce3701cp@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_c61890a629f48235895cf0426ce3701cp@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_c61890a629f48235895cf0426ce3701cp@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_c61890a629f48235895cf0426ce3701cp@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_c61890a629f48235895cf0426ce3701cp@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_c61890a629f48235895cf0426ce3701cp1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_c61890a629f48235895cf0426ce3701cp@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_c61890a629f48235895cf0426ce3701cp@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_c61890a629f48235895cf0426ce3701cp9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_c61890a629f48235895cf0426ce3701cp3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_c61890a629f48235895cf0426ce3701cp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_c61890a629f48235895cf0426ce3701cp@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_c61890a629f48235895cf0426ce3701cp1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_c61890a629f48235895cf0426ce3701cp@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_c61890a629f48235895cf0426ce3701cp@chr3:154459231..154459240, +
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_c61890a629f48235895cf0426ce3701cp7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_c61890a629f48235895cf0426ce3701cp@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_c61890a629f48235895cf0426ce3701cp@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_c61890a629f48235895cf0426ce3701cp@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_c61890a629f48235895cf0426ce3701cp9@Otof
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_c61890a629f48235895cf0426ce3701cp6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_c61890a629f48235895cf0426ce3701cp@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_c61890a629f48235895cf0426ce3701cp1@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_c61890a629f48235895cf0426ce3701cp18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_c61890a629f48235895cf0426ce3701cp2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_c61890a629f48235895cf0426ce3701cp5@Tecta
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_c61890a629f48235895cf0426ce3701cp@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_c61890a629f48235895cf0426ce3701cp41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_c61890a629f48235895cf0426ce3701cp6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_c61890a629f48235895cf0426ce3701cp@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_c61890a629f48235895cf0426ce3701cp@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_c61890a629f48235895cf0426ce3701cp@chr11:11599532..11599539, -
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_c61890a629f48235895cf0426ce3701cp@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_c61890a629f48235895cf0426ce3701cp@chr1:194818647..194818660, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_c61890a629f48235895cf0426ce3701cp4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_c61890a629f48235895cf0426ce3701cp13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_c61890a629f48235895cf0426ce3701cp@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_c61890a629f48235895cf0426ce3701cp2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_c61890a629f48235895cf0426ce3701cp2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_c61890a629f48235895cf0426ce3701cp2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_c61890a629f48235895cf0426ce3701cp@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_c61890a629f48235895cf0426ce3701cp1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_c61890a629f48235895cf0426ce3701cp@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_c61890a629f48235895cf0426ce3701cp4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_c61890a629f48235895cf0426ce3701cp2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_c61890a629f48235895cf0426ce3701cp2@Otof
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_c61890a629f48235895cf0426ce3701cp@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_c61890a629f48235895cf0426ce3701cp1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_c61890a629f48235895cf0426ce3701cp@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_c61890a629f48235895cf0426ce3701cp@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_c61890a629f48235895cf0426ce3701cp7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_c61890a629f48235895cf0426ce3701cp@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_c61890a629f48235895cf0426ce3701cp@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_c61890a629f48235895cf0426ce3701cp3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_c61890a629f48235895cf0426ce3701cp@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_c61890a629f48235895cf0426ce3701cp@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_c61890a629f48235895cf0426ce3701cp@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_c61890a629f48235895cf0426ce3701cp@chr2:75320183..75320189, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_c61890a629f48235895cf0426ce3701cp1@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_c61890a629f48235895cf0426ce3701cp13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_c61890a629f48235895cf0426ce3701cp@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_c61890a629f48235895cf0426ce3701cp@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_c61890a629f48235895cf0426ce3701cp1@Tmc1
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_c61890a629f48235895cf0426ce3701cp1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_c61890a629f48235895cf0426ce3701cp2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_c61890a629f48235895cf0426ce3701cp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_c61890a629f48235895cf0426ce3701cp@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_c61890a629f48235895cf0426ce3701cp11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_c61890a629f48235895cf0426ce3701cp@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_c61890a629f48235895cf0426ce3701cp@chr15:89215306..89215315, +
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_c61890a629f48235895cf0426ce3701cp@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_c61890a629f48235895cf0426ce3701cp1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_c61890a629f48235895cf0426ce3701cp@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_c61890a629f48235895cf0426ce3701cp12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_c61890a629f48235895cf0426ce3701cp3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_c61890a629f48235895cf0426ce3701cp1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_c61890a629f48235895cf0426ce3701cp6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_c61890a629f48235895cf0426ce3701cp@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_c61890a629f48235895cf0426ce3701cp@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_c61890a629f48235895cf0426ce3701cp3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_c61890a629f48235895cf0426ce3701cp3@Strc
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_c61890a629f48235895cf0426ce3701cp@chr4:101908153..101908163, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "The sensory system used for balance and hearing.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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