UBERON:0002217: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=synovial joint | |name=synovial joint | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:28, 12 September 2014
| Name: | synovial joint | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Joint in which the articulating bones or cartilages are connected by an articular capsule which encloses a synovial membrane and a synovial cavity. Examples: Temporomandibular joint, knee joint.[FMA]" [FMA:FMA, Wikipedia:Synovial_joint] | ||
| Xrefs: |
| ||
| Synonyms: |
"articulatio synoviale" EXACT [] "diarthrodial joints" RELATED [ZFA:0005153] "diarthroses" EXACT [ZFA:0005153] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_7501-MA_0000322 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000982(skeletal joint) |
|---|---|
| disjoint_from: | UBERON:0011134(nonsynovial joint) |
Children
| is a: | UBERON:0011139 (synovial limb joint) |
|---|---|
| part of: | UBERON:0002018 (synovial membrane of synovial joint) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10267-104D6
- 10295-104G7 (cruciate ligament, donor2)
- 10323-105A8
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 11291-117A4 (Synoviocyte, donor1)
- 11368-117I9 (Synoviocyte, donor2)
- 11440-118H9 (Synoviocyte, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002217 (synovial joint), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.24e-88 | FFCP PHASE2:Hg19::chr7:80546293..80546302,-#_5a0289455d8d19a912b48fd6989a118e | p31@SEMA3C |
| 6.24e-88 | FFCP PHASE1:Hg19::chr7:80546293..80546302,-#_5a0289455d8d19a912b48fd6989a118e | p31@SEMA3C |
| 1.71e-66 | FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_925bce1c50c83f347524907635604138 | p@chr18:22150956..22150983, + |
| 1.71e-66 | FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_925bce1c50c83f347524907635604138 | p@chr18:22150956..22150983, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr8:37411632..37411639,-#_2863efd0810ef354f5e9b9f30e442fd5 | p1@ENST00000517363 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:172134667..172134711,+#_2863efd0810ef354f5e9b9f30e442fd5 | p@chr1:172134667..172134711, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:172134667..172134711,+#_2863efd0810ef354f5e9b9f30e442fd5 | p@chr1:172134667..172134711, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr12:130786785..130786827,-#_2863efd0810ef354f5e9b9f30e442fd5 | p@chr12:130786785..130786827, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:181751144..181751146,+#_2863efd0810ef354f5e9b9f30e442fd5 | p@chr2:181751144..181751146, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:172134736..172134739,+#_2863efd0810ef354f5e9b9f30e442fd5 | p@chr1:172134736..172134739, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:181751144..181751146,+#_2863efd0810ef354f5e9b9f30e442fd5 | p@chr2:181751144..181751146, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr12:130786785..130786827,-#_2863efd0810ef354f5e9b9f30e442fd5 | p@chr12:130786785..130786827, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:172134736..172134739,+#_2863efd0810ef354f5e9b9f30e442fd5 | p@chr1:172134736..172134739, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr15:68117826..68117829,+#_2863efd0810ef354f5e9b9f30e442fd5 | p9@SKOR1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:172134755..172134764,+#_2863efd0810ef354f5e9b9f30e442fd5 | p@chr1:172134755..172134764, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr15:68117826..68117829,+#_2863efd0810ef354f5e9b9f30e442fd5 | p9@SKOR1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:172134755..172134764,+#_2863efd0810ef354f5e9b9f30e442fd5 | p@chr1:172134755..172134764, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr8:37411632..37411639,-#_2863efd0810ef354f5e9b9f30e442fd5 | p1@ENST00000517363 |
| 1.68e-53 | FFCP PHASE2:Hg19::chr8:25337208..25337219,+#_cdc4c9d69c1aeacf58ad4b4221c4bd3e | p5@CDCA2 |
| 1.68e-53 | FFCP PHASE1:Hg19::chr8:25337208..25337219,+#_cdc4c9d69c1aeacf58ad4b4221c4bd3e | p5@CDCA2 |
| 2.19e-53 | FFCP PHASE2:Hg19::chr2:242009429..242009432,+#_8171679aff5cf3915616f6214e7b590b | p@chr2:242009429..242009432, + |
| 2.19e-53 | FFCP PHASE1:Hg19::chr2:242009429..242009432,+#_8171679aff5cf3915616f6214e7b590b | p@chr2:242009429..242009432, + |
| 2.87e-53 | FFCP PHASE1:Hg19::chr12:131476821..131476831,-#_ea6854d8f30f6f713887befc5fac7865 | p@chr12:131476821..131476831, - |
| 2.87e-53 | FFCP PHASE2:Hg19::chr12:131476821..131476831,-#_ea6854d8f30f6f713887befc5fac7865 | p@chr12:131476821..131476831, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chrY:58884631..58884640,+#_1ef41a1868ddbaa67ce87542c979c222 | p@chrY:58884631..58884640, + |
| 1.22e-44 | FFCP PHASE1:Hg19::chrY:58884631..58884640,+#_1ef41a1868ddbaa67ce87542c979c222 | p@chrY:58884631..58884640, + |
| 1.8e-38 | FFCP PHASE2:Hg19::chr1:142537706..142537723,-#_3efc4d95bcbdf7650a7ee7aff4931574 | p@chr1:142537706..142537723, - |
| 1.8e-38 | FFCP PHASE1:Hg19::chr1:142537706..142537723,-#_3efc4d95bcbdf7650a7ee7aff4931574 | p@chr1:142537706..142537723, - |
| 1.85e-36 | FFCP PHASE1:Hg19::chr10:131634104..131634108,-#_2940836afe2c1874cc773c8a69670b27 | p@chr10:131634104..131634108, - |
| 1.85e-36 | FFCP PHASE2:Hg19::chr10:131634104..131634108,-#_2940836afe2c1874cc773c8a69670b27 | p@chr10:131634104..131634108, - |
| 3.33e-34 | FFCP PHASE2:Hg19::chr17:9066265..9066271,+#_035d956fd1107ec26bd8292ef1497343 | p@chr17:9066265..9066271, + |
| 3.33e-34 | FFCP PHASE1:Hg19::chr17:9066265..9066271,+#_035d956fd1107ec26bd8292ef1497343 | p@chr17:9066265..9066271, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:139010162..139010169,+#_fea9c771e19c9d71b56304f7fbf4b149 | p1@LOC641364 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:37411648..37411657,-#_fea9c771e19c9d71b56304f7fbf4b149 | p1@ENST00000519738 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:139010162..139010169,+#_fea9c771e19c9d71b56304f7fbf4b149 | p1@LOC641364 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:37411648..37411657,-#_fea9c771e19c9d71b56304f7fbf4b149 | p1@ENST00000519738 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr15:68118244..68118272,+#_fea9c771e19c9d71b56304f7fbf4b149 | p@chr15:68118244..68118272, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr15:68118244..68118272,+#_fea9c771e19c9d71b56304f7fbf4b149 | p@chr15:68118244..68118272, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:91435143..91435151,-#_fea9c771e19c9d71b56304f7fbf4b149 | p@chr12:91435143..91435151, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:54379011..54379016,+#_fea9c771e19c9d71b56304f7fbf4b149 | p15@HOXC10 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:91435143..91435151,-#_fea9c771e19c9d71b56304f7fbf4b149 | p@chr12:91435143..91435151, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:135140510..135140524,-#_fea9c771e19c9d71b56304f7fbf4b149 | p@chr10:135140510..135140524, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:54379011..54379016,+#_fea9c771e19c9d71b56304f7fbf4b149 | p15@HOXC10 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr5:1043105..1043109,+#_fea9c771e19c9d71b56304f7fbf4b149 | p@chr5:1043105..1043109, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr15:68124311..68124318,+#_fea9c771e19c9d71b56304f7fbf4b149 | p@chr15:68124311..68124318, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:135140510..135140524,-#_fea9c771e19c9d71b56304f7fbf4b149 | p@chr10:135140510..135140524, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:130646534..130646542,+#_fea9c771e19c9d71b56304f7fbf4b149 | p5@FZD10 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr5:1043105..1043109,+#_fea9c771e19c9d71b56304f7fbf4b149 | p@chr5:1043105..1043109, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:78774585..78774589,-#_fea9c771e19c9d71b56304f7fbf4b149 | p@chr8:78774585..78774589, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr15:68124311..68124318,+#_fea9c771e19c9d71b56304f7fbf4b149 | p@chr15:68124311..68124318, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:78774585..78774589,-#_fea9c771e19c9d71b56304f7fbf4b149 | p@chr8:78774585..78774589, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr12:130646534..130646542,+#_fea9c771e19c9d71b56304f7fbf4b149 | p5@FZD10 |
| 5.51e-34 | FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_036fca98bec9de066e88d9dec56f20cc | p6@ACAN |
| 5.51e-34 | FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_036fca98bec9de066e88d9dec56f20cc | p6@ACAN |
| 5.96e-34 | FFCP PHASE1:Hg19::chr15:68117844..68117858,+#_e29461d5ab8121d5ee8bc4172d448ba5 | p3@SKOR1 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr17:63705566..63705573,-#_e29461d5ab8121d5ee8bc4172d448ba5 | p@chr17:63705566..63705573, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr17:63705566..63705573,-#_e29461d5ab8121d5ee8bc4172d448ba5 | p@chr17:63705566..63705573, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr1:172145683..172145699,+#_e29461d5ab8121d5ee8bc4172d448ba5 | p@chr1:172145683..172145699, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:172145683..172145699,+#_e29461d5ab8121d5ee8bc4172d448ba5 | p@chr1:172145683..172145699, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr13:73102090..73102097,-#_e29461d5ab8121d5ee8bc4172d448ba5 | p@chr13:73102090..73102097, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr13:73102090..73102097,-#_e29461d5ab8121d5ee8bc4172d448ba5 | p@chr13:73102090..73102097, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:42072877..42072881,-#_e29461d5ab8121d5ee8bc4172d448ba5 | p11@C6orf132 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:42072877..42072881,-#_e29461d5ab8121d5ee8bc4172d448ba5 | p11@C6orf132 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr12:54366780..54366791,+#_e29461d5ab8121d5ee8bc4172d448ba5 | p12@HOXC11 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr12:54366780..54366791,+#_e29461d5ab8121d5ee8bc4172d448ba5 | p12@HOXC11 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr15:68117844..68117858,+#_e29461d5ab8121d5ee8bc4172d448ba5 | p3@SKOR1 |
| 7.7e-34 | FFCP PHASE1:Hg19::chrY:13450855..13450866,+#_21b137d17d95dff0b0c3161fc4b53c79 | p@chrY:13450855..13450866, + |
| 7.7e-34 | FFCP PHASE2:Hg19::chrY:13450855..13450866,+#_21b137d17d95dff0b0c3161fc4b53c79 | p@chrY:13450855..13450866, + |
| 1.46e-31 | FFCP PHASE1:Hg19::chr19:18718172..18718197,+#_f1307c9e9b4a94e6b777993626e3cd5f | p@chr19:18718172..18718197, + |
| 1.46e-31 | FFCP PHASE2:Hg19::chr19:18718172..18718197,+#_f1307c9e9b4a94e6b777993626e3cd5f | p@chr19:18718172..18718197, + |
| 1.71e-30 | FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_ced81508a1f613c2ebdc641b145c65e0 | p9@ERG |
| 1.71e-30 | FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_ced81508a1f613c2ebdc641b145c65e0 | p9@ERG |
| 2.3e-30 | FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_f421973e7e30941bdef7396c42be9db7 | p8@ACAN |
| 2.3e-30 | FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_f421973e7e30941bdef7396c42be9db7 | p@chr1:186273262..186273282, + |
| 2.3e-30 | FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_f421973e7e30941bdef7396c42be9db7 | p8@ACAN |
| 2.3e-30 | FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_f421973e7e30941bdef7396c42be9db7 | p@chr1:186273262..186273282, + |
| 7.54e-30 | FFCP PHASE2:Hg19::chr1:186276427..186276448,+#_696f002dfc2d36807beacb4d1336c060 | p@chr1:186276427..186276448, + |
| 7.54e-30 | FFCP PHASE1:Hg19::chr1:186276427..186276448,+#_696f002dfc2d36807beacb4d1336c060 | p@chr1:186276427..186276448, + |
| 8.12e-28 | FFCP PHASE2:Hg19::chr7:80373118..80373135,-#_3c683c38308d3ff2d42c09b98a2e8b2c | p21@SEMA3C |
| 8.12e-28 | FFCP PHASE1:Hg19::chr7:80373118..80373135,-#_3c683c38308d3ff2d42c09b98a2e8b2c | p21@SEMA3C |
| 1.39e-27 | FFCP PHASE2:Hg19::chr20:48160907..48160918,-#_e5252239089c4ef70f3f2a5cfc364ab5 | p@chr20:48160907..48160918, - |
| 1.39e-27 | FFCP PHASE1:Hg19::chr20:48160907..48160918,-#_e5252239089c4ef70f3f2a5cfc364ab5 | p@chr20:48160907..48160918, - |
| 1.82e-27 | FFCP PHASE2:Hg19::chr20:43343646..43343655,+#_6dc6e9dca7bbc0223be86e64f2352bb3 | p7@WISP2 |
| 1.82e-27 | FFCP PHASE1:Hg19::chr20:43343646..43343655,+#_6dc6e9dca7bbc0223be86e64f2352bb3 | p7@WISP2 |
| 1.82e-27 | FFCP PHASE2:Hg19::chr3:156877038..156877058,-#_6dc6e9dca7bbc0223be86e64f2352bb3 | p35@CCNL1 |
| 1.82e-27 | FFCP PHASE1:Hg19::chr3:156877038..156877058,-#_6dc6e9dca7bbc0223be86e64f2352bb3 | p35@CCNL1 |
| 1.82e-27 | FFCP PHASE2:Hg19::chr1:142537912..142537938,-#_6dc6e9dca7bbc0223be86e64f2352bb3 | p@chr1:142537912..142537938, - |
| 1.82e-27 | FFCP PHASE1:Hg19::chr1:142537912..142537938,-#_6dc6e9dca7bbc0223be86e64f2352bb3 | p@chr1:142537912..142537938, - |
| 2.08e-27 | FFCP PHASE1:Hg19::chr1:142539672..142539687,-#_6a614aeb07ef61a3261623017e405403 | p@chr1:142539672..142539687, - |
| 2.08e-27 | FFCP PHASE2:Hg19::chr6:1609602..1609636,-#_6a614aeb07ef61a3261623017e405403 | p@chr6:1609602..1609636, - |
| 2.08e-27 | FFCP PHASE1:Hg19::chr6:1609602..1609636,-#_6a614aeb07ef61a3261623017e405403 | p@chr6:1609602..1609636, - |
| 2.08e-27 | FFCP PHASE2:Hg19::chr1:142539672..142539687,-#_6a614aeb07ef61a3261623017e405403 | p@chr1:142539672..142539687, - |
| 2.38e-27 | FFCP PHASE2:Hg19::chr21:39705323..39705334,-#_105613a74b9f5af567c64232d0799988 | p2@ENST00000436845 |
| 2.38e-27 | FFCP PHASE1:Hg19::chr21:39705323..39705334,-#_105613a74b9f5af567c64232d0799988 | p2@ENST00000436845 |
| 3.11e-27 | FFCP PHASE2:Hg19::chr6:31918397..31918412,+#_8649b4adbb9d8e75df39579521e6114c | p15@CFB |
| 3.11e-27 | FFCP PHASE2:Hg19::chr16:15680784..15680797,+#_8649b4adbb9d8e75df39579521e6114c | p@chr16:15680784..15680797, + |
| 3.11e-27 | FFCP PHASE1:Hg19::chr6:31918397..31918412,+#_8649b4adbb9d8e75df39579521e6114c | p15@CFB |
| 3.11e-27 | FFCP PHASE1:Hg19::chr16:15680784..15680797,+#_8649b4adbb9d8e75df39579521e6114c | p@chr16:15680784..15680797, + |
| 4.07e-27 | FFCP PHASE1:Hg19::chr8:70476088..70476102,+#_eeeaf0cca10a46cc32759a3130e8754e | p21@SULF1 |
| 4.07e-27 | FFCP PHASE2:Hg19::chr8:70476088..70476102,+#_eeeaf0cca10a46cc32759a3130e8754e | p21@SULF1 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Is a joint that is located at the point of contact of articulating bones allowing movement. The joint has a capsule containing synovial fluid surrounding the articulating bone surfaces.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
