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UBERON:0002240: Difference between revisions

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|located_in=
|located_in=
|name=spinal cord
|name=spinal cord
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001017;;UBERON:0001137
|part_of=UBERON:0001017;;UBERON:0001137

Latest revision as of 17:28, 12 September 2014

Name:spinal cord
Namespace:FANTOM
Definition:"Elongated, approximately cylindrical part of the central nervous system that lies in the vertebral canal and from which the spinal nerves emerge." [OMD:spinal+cord, Wikipedia:Spinal_cord]
Xrefs:
links:

AAO:0010151
BM:SpC
BTO:0001279
EFO:0000110
EHDAA2:0001255
EHDAA:2863
EMAPA:17577
EMAPA:17700
EV:0100316
FMA:7647
GAID:695
[1]
MA:0000216
MAT:0000183
MESH:A.08.186.854
MIAA:0000183
ncithesaurus:Spinal_Cord
NIF_GrossAnatomy:birnlex_1709
OpenCyc:Mx4rvVjjk5wpEbGdrcN5Y29ycA
SCTID:180959008
TAO:0000075
VHOG:0000601
XAO:0000020

ZFA:0000075
Synonyms: "medulla spinalis" RELATED [BTO:0001279]
"medulla spinalis" RELATED LATIN [Wikipedia:Spinal_cord]
"spinal cord structure" RELATED [ZFA:0000075]
"spinal medulla" RELATED [BTO:0001279]
Comments:TODO: add superclass to unify with VNC?
Alt_id: UBERON:FMA_7647-MA_0000216-MIAA_0000183-XAO_0000020-ZFA_0000075
Subset: major_organ
organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000489(cavitated compound organ),UBERON:0004121(ectoderm-derived structure),UBERON:0005174(dorsal region element),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0003076(posterior neural tube)
part_of:UBERON:0001017(central nervous system),UBERON:0001137(dorsum)



Children

is a:FF:10359-105E8 (spinal cord, newborn, donor10223)
derives from:FF:0010056 (human spinal cord - fetal sample),FF:0010159 (human spinal cord - adult sample),FF:0011305 (mouse spinal cord- adult sample)
part of:FF:0000198 (astrocyte of spinal cord),UBERON:0001948 (regional part of spinal cord),UBERON:0002315 (gray matter of spinal cord),CL:0002606 (astrocyte of the spinal cord),UBERON:0016550 (spinal cord column)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002240 (spinal cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Part of the central nervous system which descends from the hindbrain within the vertebral column.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.