UBERON:0002240: Difference between revisions
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|located_in= | |located_in= | ||
|name=spinal cord | |name=spinal cord | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001017;;UBERON:0001137 | |part_of=UBERON:0001017;;UBERON:0001137 |
Latest revision as of 17:28, 12 September 2014
Name: | spinal cord | |
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Namespace: | FANTOM | |
Definition: | "Elongated, approximately cylindrical part of the central nervous system that lies in the vertebral canal and from which the spinal nerves emerge." [OMD:spinal+cord, Wikipedia:Spinal_cord] | |
Xrefs: |
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Synonyms: |
"medulla spinalis" RELATED [BTO:0001279] "medulla spinalis" RELATED LATIN [Wikipedia:Spinal_cord] "spinal cord structure" RELATED [ZFA:0000075] "spinal medulla" RELATED [BTO:0001279] | |
Comments: | TODO: add superclass to unify with VNC? | |
Alt_id: | UBERON:FMA_7647-MA_0000216-MIAA_0000183-XAO_0000020-ZFA_0000075 | |
Subset: |
major_organ organ_slim uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000489(cavitated compound organ),UBERON:0004121(ectoderm-derived structure),UBERON:0005174(dorsal region element),UBERON:0010314(structure with developmental contribution from neural crest) |
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develops_from: | UBERON:0003076(posterior neural tube) |
part_of: | UBERON:0001017(central nervous system),UBERON:0001137(dorsum) |
Children
is a: | FF:10359-105E8 (spinal cord, newborn, donor10223) |
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derives from: | FF:0010056 (human spinal cord - fetal sample),FF:0010159 (human spinal cord - adult sample),FF:0011305 (mouse spinal cord- adult sample) |
part of: | FF:0000198 (astrocyte of spinal cord),UBERON:0001948 (regional part of spinal cord),UBERON:0002315 (gray matter of spinal cord),CL:0002606 (astrocyte of the spinal cord),UBERON:0016550 (spinal cord column) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10056-101H2 (spinal cord, fetal, donor1)
- 10159-103A6 (spinal cord, adult, donor10252)
- 10181-103D1 (spinal cord - adult, donor10196)
- 10359-105E8 (spinal cord, newborn, donor10223)
- 10369-105F9 (spinal cord, adult, donor10258)
- 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
- 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
- 11720-123D1 (Mouse Neurons - dorsal spinal cord, donor1)
- 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
- 11738-123F1 (Mouse Neurons - dorsal spinal cord, donor2)
... further results Mouse (Mus musculus)
- 10056-101H2 (spinal cord, fetal, donor1)
- 10159-103A6 (spinal cord, adult, donor10252)
- 10181-103D1 (spinal cord - adult, donor10196)
- 10359-105E8 (spinal cord, newborn, donor10223)
- 10369-105F9 (spinal cord, adult, donor10258)
- 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
- 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
- 11720-123D1 (Mouse Neurons - dorsal spinal cord, donor1)
- 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
- 11738-123F1 (Mouse Neurons - dorsal spinal cord, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002240 (spinal cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Part of the central nervous system which descends from the hindbrain within the vertebral column.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.