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UBERON:0003135: Difference between revisions

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Line 13: Line 13:
|located_in=
|located_in=
|name=male reproductive organ
|name=male reproductive organ
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0003101;;UBERON:0000079;;UBERON:0003101
|part_of=UBERON:0003101;;UBERON:0000079;;UBERON:0003101

Latest revision as of 17:38, 12 September 2014

Name:male reproductive organ
Namespace:FANTOM
Definition:"A male organ involved in reproduction" [UBERON:xp]
Xrefs:
links:

EMAPA:17968

MA:0000545
Synonyms: "male organism reproductive organ" EXACT [OBOL:automatic]
"male organism reproductive structure" EXACT [OBOL:automatic]
"male organism reproductive system organ" EXACT [OBOL:automatic]
"male organism sex organ" EXACT [OBOL:automatic]
"male reproductive system organ" EXACT []
"male sex organ" EXACT []
"reproductive organ of male organism" EXACT [OBOL:automatic]
"reproductive structure of male organism" EXACT [OBOL:automatic]
"reproductive system organ of male organism" EXACT [OBOL:automatic]
"sex organ of male organism" EXACT [OBOL:automatic]
Subset: organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0003133(reproductive organ),UBERON:0014403(male anatomical structure)
part_of:UBERON:0003101(male organism),UBERON:0000079(male reproductive system),UBERON:0003101(male organism)



Children

is a:UBERON:0000473 (testis),UBERON:0004054 (internal male genitalia),UBERON:0008811 (intromittent organ)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003135 (male reproductive organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data