UBERON:0003135: Difference between revisions
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|located_in= | |located_in= | ||
|name=male reproductive organ | |name=male reproductive organ | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0003101;;UBERON:0000079;;UBERON:0003101 | |part_of=UBERON:0003101;;UBERON:0000079;;UBERON:0003101 |
Latest revision as of 17:38, 12 September 2014
Name: | male reproductive organ | |
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Namespace: | FANTOM | |
Definition: | "A male organ involved in reproduction" [UBERON:xp] | |
Xrefs: |
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Synonyms: |
"male organism reproductive organ" EXACT [OBOL:automatic] "male organism reproductive structure" EXACT [OBOL:automatic] "male organism reproductive system organ" EXACT [OBOL:automatic] "male organism sex organ" EXACT [OBOL:automatic] "male reproductive system organ" EXACT [] "male sex organ" EXACT [] "reproductive organ of male organism" EXACT [OBOL:automatic] "reproductive structure of male organism" EXACT [OBOL:automatic] "reproductive system organ of male organism" EXACT [OBOL:automatic] "sex organ of male organism" EXACT [OBOL:automatic] | |
Subset: | organ_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0003133(reproductive organ),UBERON:0014403(male anatomical structure) |
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part_of: | UBERON:0003101(male organism),UBERON:0000079(male reproductive system),UBERON:0003101(male organism) |
Children
is a: | UBERON:0000473 (testis),UBERON:0004054 (internal male genitalia),UBERON:0008811 (intromittent organ) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10026-101D8 (testis, adult, pool1)
- 10096-102C6 (testis, adult, pool2)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10200-103F2 (penis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8)
- 10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14)
- 10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
- 10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)
... further results Mouse (Mus musculus)
- 10026-101D8 (testis, adult, pool1)
- 10096-102C6 (testis, adult, pool2)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10200-103F2 (penis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8)
- 10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14)
- 10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
- 10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003135 (male reproductive organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data