UBERON:0004813: Difference between revisions
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|located_in= | |located_in= | ||
|name=seminiferous tubule epithelium | |name=seminiferous tubule epithelium | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001343 | |part_of=UBERON:0001343 | ||
Latest revision as of 17:48, 12 September 2014
| Name: | seminiferous tubule epithelium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The epithelium lining the seminiferous tubules composed of primary male germ cells (spermatogonia) and supporting sertoli cells. As spermatogenesis proceeds, the developing germ cells migrate toward the lumen. The adluminal compartment, the inner two thirds of the tubules, contains spermatocytes and the more advanced germ cells[GAID]." [Wikipedia:Germinal_epithelium_(male)] | ||
| Xrefs: |
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| Synonyms: |
"epithelial tissue of seminiferous tubule" EXACT [OBOL:automatic] "epithelial tissue of seminiferous tubule of testis" EXACT [OBOL:automatic] "epithelium of seminiferous tubule" EXACT [OBOL:automatic] "epithelium of seminiferous tubule of testis" EXACT [OBOL:automatic] "germinal epithelium (male)" EXACT [Wikipedia:Germinal_epithelium_(male)] "male germinal epithelium" EXACT [Wikipedia:Germinal_epithelium_(male)] "seminiferous epithelium" EXACT [BTO:0001811] "seminiferous tubule epithelial tissue" EXACT [OBOL:automatic] "testis germinal epithelium" EXACT [VHOG:0000631] "wall of seminiferous tubule" EXACT [Wikipedia:Germinal_epithelium_(male)] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001136(mesothelium),UBERON:0004910(epithelium of male gonad) |
|---|---|
| part_of: | UBERON:0001343(seminiferous tubule of testis) |
Children
| part of: | CL:0002625 (seminiferous tubule epithelial cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11255-116F4 (Sertoli Cells, donor1)
- 11333-117F1 (Sertoli Cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004813 (seminiferous tubule epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:27721743..27721753,-#_a7ee2476c1eaa3951449dbffa85453c9 | p26@BDNF |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:27721743..27721753,-#_a7ee2476c1eaa3951449dbffa85453c9 | p26@BDNF |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:158450428..158450431,-#_53b6cf1ca83b0465c517e8e38024dfcd | p9@RARRES1 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:227505905..227505906,-#_53b6cf1ca83b0465c517e8e38024dfcd | p43@CDC42BPA |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:227505905..227505906,-#_53b6cf1ca83b0465c517e8e38024dfcd | p43@CDC42BPA |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:158450428..158450431,-#_53b6cf1ca83b0465c517e8e38024dfcd | p9@RARRES1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:47529304..47529311,-#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr8:47529304..47529311, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr13:53030077..53030083,-#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr13:53030077..53030083, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:47529304..47529311,-#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr8:47529304..47529311, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr19:54600897..54600899, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr13:53030077..53030083,-#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr13:53030077..53030083, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:69832864..69832865,+#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr8:69832864..69832865, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:69832864..69832865,+#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr8:69832864..69832865, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:18206831..18206833,+#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr7:18206831..18206833, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:40320572..40320586,-#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr19:40320572..40320586, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr19:54600897..54600899, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:40320572..40320586,-#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr19:40320572..40320586, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:9519086..9519101,+#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr2:9519086..9519101, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:193356854..193356864,+#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr3:193356854..193356864, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:170430340..170430344,+#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr3:170430340..170430344, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:18206831..18206833,+#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr7:18206831..18206833, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:193356854..193356864,+#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr3:193356854..193356864, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:170430340..170430344,+#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr3:170430340..170430344, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:89874193..89874199,+#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p7@C7orf63 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:9519086..9519101,+#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p@chr2:9519086..9519101, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:89874193..89874199,+#_f3b2f40910ec6ba6e7ba30fa35f1f2ef | p7@C7orf63 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr2:19551668..19551679,-#_ce99c681327849bdce1a895046a80659 | p@chr2:19551668..19551679, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr2:19551668..19551679,-#_ce99c681327849bdce1a895046a80659 | p@chr2:19551668..19551679, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:112931461..112931474,-#_f6567af0893b77bea993bb9f089f5e1b | p@chr3:112931461..112931474, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:98445585..98445594,-#_f6567af0893b77bea993bb9f089f5e1b | p22@TMEM130 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:112931461..112931474,-#_f6567af0893b77bea993bb9f089f5e1b | p@chr3:112931461..112931474, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:98445585..98445594,-#_f6567af0893b77bea993bb9f089f5e1b | p22@TMEM130 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:197889533..197889548,+#_f6567af0893b77bea993bb9f089f5e1b | p@chr1:197889533..197889548, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:72803155..72803204,-#_f6567af0893b77bea993bb9f089f5e1b | p@chr2:72803155..72803204, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:197889533..197889548,+#_f6567af0893b77bea993bb9f089f5e1b | p@chr1:197889533..197889548, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr12:15815732..15815744,-#_f6567af0893b77bea993bb9f089f5e1b | p21@EPS8 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:72803155..72803204,-#_f6567af0893b77bea993bb9f089f5e1b | p@chr2:72803155..72803204, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr12:15815732..15815744,-#_f6567af0893b77bea993bb9f089f5e1b | p21@EPS8 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr21:48080873..48080878,+#_076a2cc9e1b5da2a1d30b49229e60c29 | p@chr21:48080873..48080878, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:170916991..170916995,-#_076a2cc9e1b5da2a1d30b49229e60c29 | p@chr3:170916991..170916995, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:170916991..170916995,-#_076a2cc9e1b5da2a1d30b49229e60c29 | p@chr3:170916991..170916995, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr21:48080873..48080878,+#_076a2cc9e1b5da2a1d30b49229e60c29 | p@chr21:48080873..48080878, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr10:1034666..1034675,+#_076a2cc9e1b5da2a1d30b49229e60c29 | p4@GTPBP4 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_076a2cc9e1b5da2a1d30b49229e60c29 | p38@PTK2 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_076a2cc9e1b5da2a1d30b49229e60c29 | p@chr5:75912402..75912418, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:99984127..99984138,+#_076a2cc9e1b5da2a1d30b49229e60c29 | p@chr3:99984127..99984138, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_076a2cc9e1b5da2a1d30b49229e60c29 | p38@PTK2 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_076a2cc9e1b5da2a1d30b49229e60c29 | p@chr5:75912402..75912418, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:99984127..99984138,+#_076a2cc9e1b5da2a1d30b49229e60c29 | p@chr3:99984127..99984138, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr10:1034666..1034675,+#_076a2cc9e1b5da2a1d30b49229e60c29 | p4@GTPBP4 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:90830481..90830492,+#_076a2cc9e1b5da2a1d30b49229e60c29 | p@chr5:90830481..90830492, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:90830481..90830492,+#_076a2cc9e1b5da2a1d30b49229e60c29 | p@chr5:90830481..90830492, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_209cd6e07548beb64acca2febd54e758 | p8@TCF21 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_209cd6e07548beb64acca2febd54e758 | p8@TCF21 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr11:114173606..114173612,+#_209cd6e07548beb64acca2febd54e758 | p@chr11:114173606..114173612, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr2:177009137..177009140,+#_209cd6e07548beb64acca2febd54e758 | p@chr2:177009137..177009140, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr11:114173606..114173612,+#_209cd6e07548beb64acca2febd54e758 | p@chr11:114173606..114173612, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr2:177009137..177009140,+#_209cd6e07548beb64acca2febd54e758 | p@chr2:177009137..177009140, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr19:54024454..54024463,+#_c7aa80b3e18aba5124fd7401744e1681 | p31@ZNF331 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr21:17214724..17214740,+#_c7aa80b3e18aba5124fd7401744e1681 | p11@USP25 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr2:55459485..55459491,-#_c7aa80b3e18aba5124fd7401744e1681 | p6@C2orf63 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr15:39288691..39288698,+#_c7aa80b3e18aba5124fd7401744e1681 | p@chr15:39288691..39288698, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr15:39288691..39288698,+#_c7aa80b3e18aba5124fd7401744e1681 | p@chr15:39288691..39288698, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr5:144875561..144875565,+#_c7aa80b3e18aba5124fd7401744e1681 | p@chr5:144875561..144875565, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr7:137564648..137564658,-#_c7aa80b3e18aba5124fd7401744e1681 | p32@CREB3L2 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr3:46477553..46477563,-#_c7aa80b3e18aba5124fd7401744e1681 | p@chr3:46477553..46477563, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr19:54024454..54024463,+#_c7aa80b3e18aba5124fd7401744e1681 | p31@ZNF331 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr5:144875561..144875565,+#_c7aa80b3e18aba5124fd7401744e1681 | p@chr5:144875561..144875565, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr3:46477553..46477563,-#_c7aa80b3e18aba5124fd7401744e1681 | p@chr3:46477553..46477563, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr21:17214724..17214740,+#_c7aa80b3e18aba5124fd7401744e1681 | p11@USP25 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr7:137564648..137564658,-#_c7aa80b3e18aba5124fd7401744e1681 | p32@CREB3L2 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr2:55459485..55459491,-#_c7aa80b3e18aba5124fd7401744e1681 | p6@C2orf63 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:829412..829430,+#_41c9d8f49bafc613edc67a032889cd1a | p11@EFCAB4A |
| 3.99e-50 | FFCP PHASE2:Hg19::chr4:103969123..103969127,-#_41c9d8f49bafc613edc67a032889cd1a | p@chr4:103969123..103969127, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr4:103969123..103969127,-#_41c9d8f49bafc613edc67a032889cd1a | p@chr4:103969123..103969127, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:5198350..5198359,+#_41c9d8f49bafc613edc67a032889cd1a | p@chr12:5198350..5198359, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr14:64804787..64804796,-#_41c9d8f49bafc613edc67a032889cd1a | p10@ESR2 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr15:39420650..39420666,+#_41c9d8f49bafc613edc67a032889cd1a | p@chr15:39420650..39420666, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:5198350..5198359,+#_41c9d8f49bafc613edc67a032889cd1a | p@chr12:5198350..5198359, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:829412..829430,+#_41c9d8f49bafc613edc67a032889cd1a | p11@EFCAB4A |
| 3.99e-50 | FFCP PHASE1:Hg19::chr15:39420650..39420666,+#_41c9d8f49bafc613edc67a032889cd1a | p@chr15:39420650..39420666, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr14:64804787..64804796,-#_41c9d8f49bafc613edc67a032889cd1a | p10@ESR2 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr7:92462738..92462749,-#_5acd5274028228b0759bc9871ec5faac | p51@CDK6 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr14:50697797..50697820,-#_5acd5274028228b0759bc9871ec5faac | p13@SOS2 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr17:58165788..58165794,-#_5acd5274028228b0759bc9871ec5faac | p1@LOC645638 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr7:92462738..92462749,-#_5acd5274028228b0759bc9871ec5faac | p51@CDK6 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr16:1203194..1203207,+#_5acd5274028228b0759bc9871ec5faac | p3@CACNA1H |
| 6.58e-50 | FFCP PHASE1:Hg19::chr17:58165788..58165794,-#_5acd5274028228b0759bc9871ec5faac | p1@LOC645638 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr14:50697797..50697820,-#_5acd5274028228b0759bc9871ec5faac | p13@SOS2 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr16:1203194..1203207,+#_5acd5274028228b0759bc9871ec5faac | p3@CACNA1H |
| 6.62e-41 | FFCP PHASE2:Hg19::chr3:194214959..194214968,-#_686fd5f12671f3f9a56e9a4d8302f0ed | p@chr3:194214959..194214968, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr3:194214959..194214968,-#_686fd5f12671f3f9a56e9a4d8302f0ed | p@chr3:194214959..194214968, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr2:102604493..102604499,+#_abb0d359f7feb45d889780f918d5eafc | p@chr2:102604493..102604499, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr11:110581726..110581728,-#_abb0d359f7feb45d889780f918d5eafc | p@chr11:110581726..110581728, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr11:77282391..77282402,+#_abb0d359f7feb45d889780f918d5eafc | p@chr11:77282391..77282402, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr2:102604493..102604499,+#_abb0d359f7feb45d889780f918d5eafc | p@chr2:102604493..102604499, + |
| 9.91e-41 | FFCP PHASE2:Hg19::chr11:94822746..94822757,+#_abb0d359f7feb45d889780f918d5eafc | p8@ENDOD1 |
| 9.91e-41 | FFCP PHASE1:Hg19::chr11:77282391..77282402,+#_abb0d359f7feb45d889780f918d5eafc | p@chr11:77282391..77282402, + |
| 9.91e-41 | FFCP PHASE2:Hg19::chr13:49549473..49549480,+#_abb0d359f7feb45d889780f918d5eafc | p@chr13:49549473..49549480, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr11:94822746..94822757,+#_abb0d359f7feb45d889780f918d5eafc | p8@ENDOD1 |
