UBERON:0004880: Difference between revisions
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|located_in= | |located_in= | ||
|name=chordamesoderm | |name=chordamesoderm | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000922;;UBERON:0003068 | |part_of=UBERON:0000922;;UBERON:0003068 | ||
Latest revision as of 17:49, 12 September 2014
| Name: | chordamesoderm | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The central region of trunk mesoderm. This tissue forms the notochord" [UBERON:cjm] | ||
| Xrefs: |
| ||
| Synonyms: |
"axial chorda mesoderm" EXACT [ZFA:0000091] "chorda mesoderm" EXACT [] "dorsal mesoderm" EXACT [UBERONREF:0000002] "presumptive notochord" EXACT [ZFA:0000091] | ||
| Comments: | note that WP treats this as synonym of axial mesoderm |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005423(developing anatomical structure) |
|---|---|
| part_of: | UBERON:0000922(embryo),UBERON:0003068(axial mesoderm) |
Children
| develops from: | UBERON:0002328 (notochord) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004880 (chordamesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.26e-98 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_04804a6035813f474aa2cd65f157988f | p@chr3:174737010..174737023, + |
| 8.26e-98 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_04804a6035813f474aa2cd65f157988f | p@chr3:174737010..174737023, + |
| 3.03e-84 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_d5f62b6399e7e50fd0b65a9d64062609 | p4@PAX1 |
| 3.03e-84 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_d5f62b6399e7e50fd0b65a9d64062609 | p4@PAX1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_b85240482f7d6aab27acac2a1ffcf584 | p@chr9:33028063..33028067, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_b85240482f7d6aab27acac2a1ffcf584 | p@chr9:33028063..33028067, - |
| 5.46e-60 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_b1e89bf65064d0724f7d5388059db3d9 | p@chr5:30104176..30104187, - |
| 5.46e-60 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_b1e89bf65064d0724f7d5388059db3d9 | p@chr5:30104176..30104187, - |
| 9.77e-45 | FFCP PHASE2:Hg19::chr2:241987807..241987808,+#_69d400e86031c6bde26319e68a25179f | p22@SNED1 |
| 9.77e-45 | FFCP PHASE1:Hg19::chr2:241987807..241987808,+#_69d400e86031c6bde26319e68a25179f | p22@SNED1 |
| 6.64e-41 | FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_8515b98e725edcb654cfcc3ce7a74071 | p15@SNED1 |
| 6.64e-41 | FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_8515b98e725edcb654cfcc3ce7a74071 | p15@SNED1 |
| 1.31e-40 | FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_9c4ce72e24e713d32de84e49da76438a | p20@CAPZB |
| 1.31e-40 | FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_9c4ce72e24e713d32de84e49da76438a | p20@CAPZB |
| 1.8e-38 | FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_06320e83f12abfe5fb5c8dff9c51ca9f | p@chr2:12248310..12248334, - |
| 1.8e-38 | FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_06320e83f12abfe5fb5c8dff9c51ca9f | p@chr2:12248310..12248334, - |
| 2.75e-34 | FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_36ac732b005ddfc0166e6dcd9bccc46e | p6@SIX4 |
| 2.75e-34 | FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_36ac732b005ddfc0166e6dcd9bccc46e | p6@SIX4 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr11:93468399..93468405,-#_b15c8bd94313b14eca4bfc0784746e29 | p19@TAF1D, p1@SNORA40 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr4:88727274..88727278,+#_b15c8bd94313b14eca4bfc0784746e29 | p@chr4:88727274..88727278, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr13:51101468..51101499,-#_b15c8bd94313b14eca4bfc0784746e29 | p1@ENST00000428276 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr4:88727274..88727278,+#_b15c8bd94313b14eca4bfc0784746e29 | p@chr4:88727274..88727278, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr11:93468399..93468405,-#_b15c8bd94313b14eca4bfc0784746e29 | p19@TAF1D, p1@SNORA40 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr13:51101468..51101499,-#_b15c8bd94313b14eca4bfc0784746e29 | p1@ENST00000428276 |
| 2.09e-33 | FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_576ea65401b6ee08628e3737f32442f4 | p4@NKX3-2 |
| 2.09e-33 | FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_576ea65401b6ee08628e3737f32442f4 | p4@NKX3-2 |
| 4.01e-31 | FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_fa9ba24d7c172d6928392a564ac38467 | p19@HDAC9 |
| 4.01e-31 | FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_fa9ba24d7c172d6928392a564ac38467 | p19@HDAC9 |
| 1.98e-30 | FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_004d9dff4d1667066275305c1be3a077 | p@chr2:241897125..241897142, - |
| 1.98e-30 | FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_004d9dff4d1667066275305c1be3a077 | p@chr2:241897125..241897142, - |
| 4.84e-30 | FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_f54876704a77e0b1023e24c172782c1b | p@chr3:80727046..80727051, - |
| 4.84e-30 | FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_f54876704a77e0b1023e24c172782c1b | p@chr3:80727046..80727051, - |
| 7.46e-30 | FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_4e8e522f4a1d186d9e208ea7d5fc30c3 | p@chr7:158224707..158224729, - |
| 7.46e-30 | FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_4e8e522f4a1d186d9e208ea7d5fc30c3 | p@chr7:158224707..158224729, - |
| 1.48e-29 | FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_3c21000ec16fc802f6abe6a69aa9bf6c | p@chr1:65888177..65888194, + |
| 1.48e-29 | FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_3c21000ec16fc802f6abe6a69aa9bf6c | p@chr1:65888177..65888194, + |
| 2.72e-28 | FFCP PHASE1:Hg19::chr14:100848311..100848321,+#_baddf03b92d746c51c8c9297d9234245 | p5@WDR25 |
| 2.72e-28 | FFCP PHASE2:Hg19::chr14:100848311..100848321,+#_baddf03b92d746c51c8c9297d9234245 | p5@WDR25 |
| 3.26e-27 | FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_f480bfae7decf2a59fb600532ddc3645 | p1@MGC27382 |
| 3.26e-27 | FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_f480bfae7decf2a59fb600532ddc3645 | p1@MGC27382 |
| 6.92e-27 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_cd6baccb11e9111ddb689453c491d6ee | p@chr1:19778678..19778689, - |
| 6.92e-27 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_cd6baccb11e9111ddb689453c491d6ee | p@chr1:19778678..19778689, - |
| 1.46e-26 | FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_63bf3b8b40e4a4aa8a2575cc713cdc00 | p18@HDAC9 |
| 1.46e-26 | FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_63bf3b8b40e4a4aa8a2575cc713cdc00 | p18@HDAC9 |
| 1.74e-26 | FFCP PHASE1:Hg19::chr4:156129991..156130013,+#_51a9a690c125bbece3103a12f0ce8206 | p2@NPY2R |
| 1.74e-26 | FFCP PHASE2:Hg19::chr4:156129991..156130013,+#_51a9a690c125bbece3103a12f0ce8206 | p2@NPY2R |
| 7.41e-26 | FFCP PHASE1:Hg19::chr14:61113228..61113233,-#_210403069c1b791bf80a1d8d22e14b20 | p@chr14:61113228..61113233, - |
| 7.41e-26 | FFCP PHASE2:Hg19::chr14:61113228..61113233,-#_210403069c1b791bf80a1d8d22e14b20 | p@chr14:61113228..61113233, - |
| 2.04e-25 | FFCP PHASE1:Hg19::chr7:27212374..27212387,-#_cda5a78c9dcec163f1a82bbd3629e9b1 | p12@HOXA10 |
| 2.04e-25 | FFCP PHASE2:Hg19::chr7:27212374..27212387,-#_cda5a78c9dcec163f1a82bbd3629e9b1 | p12@HOXA10 |
| 6.22e-25 | FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_5bf8e3feeda1cf191440dd02d75f5b2b | p1@uc010aki.1 |
| 6.22e-25 | FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_5bf8e3feeda1cf191440dd02d75f5b2b | p1@uc010aki.1 |
| 9.49e-25 | FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_38d23d35ab2382d79a7d05785cc77397 | p1@PAX1 |
| 9.49e-25 | FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_38d23d35ab2382d79a7d05785cc77397 | p1@PAX1 |
| 4.58e-24 | FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_5e2b7b6b0a788df18cf264b6f75e6564 | p@chr5:140887761..140887777, + |
| 4.58e-24 | FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_5e2b7b6b0a788df18cf264b6f75e6564 | p@chr5:140887761..140887777, + |
| 5.35e-24 | FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_8b3e6d33de83f17a8a581df6a0a90202 | p2@PAX1 |
| 5.35e-24 | FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_8b3e6d33de83f17a8a581df6a0a90202 | p2@PAX1 |
| 8.55e-24 | FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_230564567e06f1c9c3a80cac46a6b8b2 | p16@HDAC9 |
| 8.55e-24 | FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_230564567e06f1c9c3a80cac46a6b8b2 | p16@HDAC9 |
| 2.01e-23 | FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_f257289c2fa48463ddc1537c5199d8db | p4@NUP54 |
| 2.01e-23 | FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_f257289c2fa48463ddc1537c5199d8db | p4@NUP54 |
| 2.28e-23 | FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_8de8bc1fb3e296fe2cd4088556f65c26 | p1@NKX3-2 |
| 2.28e-23 | FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_8de8bc1fb3e296fe2cd4088556f65c26 | p1@NKX3-2 |
| 3.27e-23 | FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_dad9bc2a30f1158e880b77c15b6b6d52 | p3@uc010aki.1 |
| 3.27e-23 | FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_dad9bc2a30f1158e880b77c15b6b6d52 | p3@uc010aki.1 |
| 1.25e-22 | FFCP PHASE1:Hg19::chr1:78695343..78695353,+#_dbc63beeb1d1ee0439a77309bb905b95 | p2@ENST00000413519 |
| 1.25e-22 | FFCP PHASE2:Hg19::chr1:78695343..78695353,+#_dbc63beeb1d1ee0439a77309bb905b95 | p2@ENST00000413519 |
| 1.46e-22 | FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_5f88ff0fa634fb5aa6fea7c56a9ab353 | p12@CDK5RAP2 |
| 1.46e-22 | FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_5f88ff0fa634fb5aa6fea7c56a9ab353 | p12@CDK5RAP2 |
| 9.47e-22 | FFCP PHASE2:Hg19::chr1:171076859..171076870,+#_4379cbe851f921df328c9b5e989258fb | p@chr1:171076859..171076870, + |
| 9.47e-22 | FFCP PHASE1:Hg19::chr1:171076859..171076870,+#_4379cbe851f921df328c9b5e989258fb | p@chr1:171076859..171076870, + |
| 1.35e-21 | FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_35f30a2fbd1f47730b1c8c1c5e29fccc | p@chr7:100202784..100202796, - |
| 1.35e-21 | FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_35f30a2fbd1f47730b1c8c1c5e29fccc | p@chr7:100202784..100202796, - |
| 3.83e-21 | FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_b071b4f9e451ae84ba76462c7e64feb3 | p4@PAX9 |
| 3.83e-21 | FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_b071b4f9e451ae84ba76462c7e64feb3 | p4@PAX9 |
| 4.02e-21 | FFCP PHASE1:Hg19::chr3:176765178..176765190,-#_d692d3631b95ef817205451dd537ea67 | p@chr3:176765178..176765190, - |
| 4.02e-21 | FFCP PHASE2:Hg19::chr3:176765178..176765190,-#_d692d3631b95ef817205451dd537ea67 | p@chr3:176765178..176765190, - |
| 4.06e-21 | FFCP PHASE2:Hg19::chr1:19810947..19810977,-#_6561f4d122b752cb996efc461dc88aea | p17@CAPZB |
| 4.06e-21 | FFCP PHASE1:Hg19::chr1:19810947..19810977,-#_6561f4d122b752cb996efc461dc88aea | p17@CAPZB |
| 5.43e-21 | FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_e7a5f7e6ad9532c8163d41bd4f272c35 | p8@HOXC6 |
| 5.43e-21 | FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_e7a5f7e6ad9532c8163d41bd4f272c35 | p8@HOXC6 |
| 4.94e-20 | FFCP PHASE1:Hg19::chr17:38613285..38613298,-#_cb4a5f677a09dd57c7ddc00097d1afab | p@chr17:38613285..38613298, - |
| 4.94e-20 | FFCP PHASE2:Hg19::chr17:38613285..38613298,-#_cb4a5f677a09dd57c7ddc00097d1afab | p@chr17:38613285..38613298, - |
| 9.53e-20 | FFCP PHASE2:Hg19::chr20:43343596..43343608,+#_557386db5673b27531999b3bc7bbe013 | p6@WISP2 |
| 9.53e-20 | FFCP PHASE1:Hg19::chr20:43343596..43343608,+#_557386db5673b27531999b3bc7bbe013 | p6@WISP2 |
| 1.46e-19 | FFCP PHASE2:Hg19::chr1:78958320..78958332,+#_a782e9cce51d8fd0410fc8871b6ddff1 | p2@PTGFR |
| 1.46e-19 | FFCP PHASE1:Hg19::chr1:78958320..78958332,+#_a782e9cce51d8fd0410fc8871b6ddff1 | p2@PTGFR |
| 2.04e-19 | FFCP PHASE1:Hg19::chr4:70707689..70707711,-#_9bd36f72c830a5fdd97c89ef01921e9a | p@chr4:70707689..70707711, - |
| 2.04e-19 | FFCP PHASE2:Hg19::chr4:70707689..70707711,-#_9bd36f72c830a5fdd97c89ef01921e9a | p@chr4:70707689..70707711, - |
| 3.75e-19 | FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_3dcaa8c7fd991d053e8f24c4fbd8515e | p1@ENST00000555639 |
| 3.75e-19 | FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_3dcaa8c7fd991d053e8f24c4fbd8515e | p1@ENST00000555639 |
| 4.68e-19 | FFCP PHASE1:Hg19::chr2:12246664..12246694,+#_dce1b9ed9e87eb581f08e40f7c02d350 | p1@ENST00000449986 |
| 4.68e-19 | FFCP PHASE2:Hg19::chr2:12246664..12246694,+#_dce1b9ed9e87eb581f08e40f7c02d350 | p1@ENST00000449986 |
| 1.04e-18 | FFCP PHASE2:Hg19::chr3:158390171..158390180,-#_987e30939dcbb096f71fabd2ec903eda | p3@LXN |
| 1.04e-18 | FFCP PHASE1:Hg19::chr3:158390171..158390180,-#_987e30939dcbb096f71fabd2ec903eda | p3@LXN |
| 5.12e-18 | FFCP PHASE1:Hg19::chr6:112375300..112375334,+#_60c38cda633deff37487c4e4773518be | p1@WISP3 |
| 5.12e-18 | FFCP PHASE2:Hg19::chr6:112375300..112375334,+#_60c38cda633deff37487c4e4773518be | p1@WISP3 |
| 9.14e-18 | FFCP PHASE1:Hg19::chr8:77595678..77595688,+#_bdb76b0944e285b32e346345b0767406 | p9@ZFHX4 |
| 9.14e-18 | FFCP PHASE2:Hg19::chr8:77595678..77595688,+#_bdb76b0944e285b32e346345b0767406 | p9@ZFHX4 |
