UBERON:0009494: Difference between revisions
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|located_in= | |located_in= | ||
|name=pharyngeal arch mesenchymal region | |name=pharyngeal arch mesenchymal region | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002539;;UBERON:0010046 | |part_of=UBERON:0002539;;UBERON:0010046 | ||
Latest revision as of 18:05, 12 September 2014
| Name: | pharyngeal arch mesenchymal region |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A portion of mesenchymal tissue associated with an individual pharyngeal arch." [UBERON:cjm] |
| Synonyms: |
"branchial arch mesenchyme" EXACT [MP:0011262] "pharyngeal arch mesenchyme" EXACT [UBERON:cjm] |
| Comments: | Editor notes: this represents a part of the entire arch mesenchyme (UBERON:0010046), and is therefore a superclass of the individual arch mesenchyme classes. Alternate definition: primordial embryonic connective tissue associated with the branchial arches, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to facial and cranial nerve-associated structures. [MP:0011262] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004119(endoderm-derived structure),UBERON:0005253(head mesenchyme),UBERON:0007524(dense mesenchyme tissue),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0002539(pharyngeal arch),UBERON:0010046(entire pharyngeal arch associated mesenchyme) |
Children
| is a: | UBERON:0010042 (1st arch mesenchyme) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009494 (pharyngeal arch mesenchymal region), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_620a136ddaeb98de45c8634a1f2768ac | p14@C17orf67 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_620a136ddaeb98de45c8634a1f2768ac | p14@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_1a33975f97cbfda11c7eb2e1f1a0cb3d | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_1a33975f97cbfda11c7eb2e1f1a0cb3d | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_1a33975f97cbfda11c7eb2e1f1a0cb3d | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_1a33975f97cbfda11c7eb2e1f1a0cb3d | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_1a33975f97cbfda11c7eb2e1f1a0cb3d | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_1a33975f97cbfda11c7eb2e1f1a0cb3d | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_1a33975f97cbfda11c7eb2e1f1a0cb3d | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_1a33975f97cbfda11c7eb2e1f1a0cb3d | p@chr8:57353655..57353662, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_28032f9bed98a384aed84bc9fcf5dcb9 | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_28032f9bed98a384aed84bc9fcf5dcb9 | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_28032f9bed98a384aed84bc9fcf5dcb9 | p14@MAB21L2 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_28032f9bed98a384aed84bc9fcf5dcb9 | p14@MAB21L2 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_df202582fd3c3fc34e0f4ec84247c798 | p@chr4:151505582..151505614, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_df202582fd3c3fc34e0f4ec84247c798 | p@chr4:151505582..151505614, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_766d6d0f1d343f982dc2df8a98752b36 | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_766d6d0f1d343f982dc2df8a98752b36 | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_766d6d0f1d343f982dc2df8a98752b36 | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_766d6d0f1d343f982dc2df8a98752b36 | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_766d6d0f1d343f982dc2df8a98752b36 | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_766d6d0f1d343f982dc2df8a98752b36 | p9@C17orf67 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_0400a17246dcfc99d2069283a7d34498 | p@chr8:57802672..57802682, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_0400a17246dcfc99d2069283a7d34498 | p@chr8:57802672..57802682, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_a04bc0a271cdb319618788f324974561 | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_a04bc0a271cdb319618788f324974561 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_a04bc0a271cdb319618788f324974561 | p7@ALX1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_a04bc0a271cdb319618788f324974561 | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_a04bc0a271cdb319618788f324974561 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_a04bc0a271cdb319618788f324974561 | p7@ALX1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_427b7e1627c453d4381c6907dbc074c5 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_427b7e1627c453d4381c6907dbc074c5 | p23@FLT1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_427b7e1627c453d4381c6907dbc074c5 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_427b7e1627c453d4381c6907dbc074c5 | p23@FLT1 |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_0a3c841c34153ddd39cebc3be1e6ef34 | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_0a3c841c34153ddd39cebc3be1e6ef34 | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_0a3c841c34153ddd39cebc3be1e6ef34 | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_0a3c841c34153ddd39cebc3be1e6ef34 | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_0a3c841c34153ddd39cebc3be1e6ef34 | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_0a3c841c34153ddd39cebc3be1e6ef34 | p@chr8:57354143..57354152, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_e706dbebead4f7ba9408e34d15997559 | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_e706dbebead4f7ba9408e34d15997559 | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_e706dbebead4f7ba9408e34d15997559 | p8@LHX8 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_e706dbebead4f7ba9408e34d15997559 | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_e706dbebead4f7ba9408e34d15997559 | p8@LHX8 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_e706dbebead4f7ba9408e34d15997559 | p12@FAM65C |
| 2.21e-40 | FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_3948b33cc6e1e7be0c064853895829cf | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_3948b33cc6e1e7be0c064853895829cf | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_3948b33cc6e1e7be0c064853895829cf | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_3948b33cc6e1e7be0c064853895829cf | p@chr16:67687543..67687559, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_a3424243a1725d22ac7431f12ab261b8 | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_a3424243a1725d22ac7431f12ab261b8 | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_a3424243a1725d22ac7431f12ab261b8 | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_a3424243a1725d22ac7431f12ab261b8 | p@chr6:46190219..46190230, - |
| 1.84e-34 | FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_2b930db954572e669553f7d51c625447 | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_2b930db954572e669553f7d51c625447 | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_2b930db954572e669553f7d51c625447 | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_2b930db954572e669553f7d51c625447 | p5@PENK |
| 1.84e-34 | FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_2b930db954572e669553f7d51c625447 | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_2b930db954572e669553f7d51c625447 | p5@PENK |
| 2.58e-34 | FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_d97565b678e6ee4ddbd4dfcad488a110 | p9@SIX1 |
| 2.58e-34 | FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_d97565b678e6ee4ddbd4dfcad488a110 | p9@SIX1 |
| 5.05e-34 | FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_4363aede665d9a198a28ffef8b6202b8 | p@chr6:134327986..134327991, - |
| 5.05e-34 | FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_4363aede665d9a198a28ffef8b6202b8 | p@chr6:134327986..134327991, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_69f5ab9cf05e59e4b1da23fb78e264de | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_69f5ab9cf05e59e4b1da23fb78e264de | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_69f5ab9cf05e59e4b1da23fb78e264de | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_69f5ab9cf05e59e4b1da23fb78e264de | p@chr8:57353676..57353688, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_25f9b4ebd4888971837ce54296353401 | p12@FBN2 |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_25f9b4ebd4888971837ce54296353401 | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_25f9b4ebd4888971837ce54296353401 | p4@PLAC1 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_25f9b4ebd4888971837ce54296353401 | p12@FBN2 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_25f9b4ebd4888971837ce54296353401 | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_25f9b4ebd4888971837ce54296353401 | p4@PLAC1 |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_43b1d492e7a2ab02121b534cdfb85e28 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_43b1d492e7a2ab02121b534cdfb85e28 | p@chr8:57354360..57354367, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_43b1d492e7a2ab02121b534cdfb85e28 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_43b1d492e7a2ab02121b534cdfb85e28 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_43b1d492e7a2ab02121b534cdfb85e28 | p@chr8:57354360..57354367, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_43b1d492e7a2ab02121b534cdfb85e28 | p@chr8:57353982..57353991, - |
| 9.99e-30 | FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_11f08bbbeb19188b5e8ffb267cb23760 | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_11f08bbbeb19188b5e8ffb267cb23760 | p7@SHOX2 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_11f08bbbeb19188b5e8ffb267cb23760 | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_11f08bbbeb19188b5e8ffb267cb23760 | p7@SHOX2 |
| 1.33e-29 | FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_1d0985765e1200ac5396954338f0d5cc | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_1d0985765e1200ac5396954338f0d5cc | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_1d0985765e1200ac5396954338f0d5cc | p@chr17:79071218..79071221, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_1d0985765e1200ac5396954338f0d5cc | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_1d0985765e1200ac5396954338f0d5cc | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_1d0985765e1200ac5396954338f0d5cc | p@chr17:79071218..79071221, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_391141a5c4f8da8210624d48757abbd2 | p@chr1:21904551..21904569, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_391141a5c4f8da8210624d48757abbd2 | p@chr1:21904551..21904569, - |
| 3.16e-29 | FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_81942027b5ffff582a887355e509bb30 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_81942027b5ffff582a887355e509bb30 | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_81942027b5ffff582a887355e509bb30 | p18@MEF2D |
| 3.16e-29 | FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_81942027b5ffff582a887355e509bb30 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_81942027b5ffff582a887355e509bb30 | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_81942027b5ffff582a887355e509bb30 | p18@MEF2D |
| 4.2e-29 | FFCP PHASE1:Hg19::chr10:28033565..28033575,-#_200e1f738dfcc9399ab0b4740c16077a | p@chr10:28033565..28033575, - |
| 4.2e-29 | FFCP PHASE1:Hg19::chr1:75602768..75602785,+#_200e1f738dfcc9399ab0b4740c16077a | p@chr1:75602768..75602785, + |
