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UBERON:0009661: Difference between revisions

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Line 13: Line 13:
|located_in=
|located_in=
|name=midbrain nucleus
|name=midbrain nucleus
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001891
|part_of=UBERON:0001891

Latest revision as of 18:06, 12 September 2014

Name:midbrain nucleus
Namespace:FANTOM
Definition:"Nucleus located in the midbrain." [ZFIN:curator]
Xrefs:
links:

SCTID:279285003
TAO:0002209

ZFA:0001665

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002308(nucleus of brain)
part_of:UBERON:0001891(midbrain)



Children

is a:UBERON:0002038 (substantia nigra)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009661 (midbrain nucleus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data