FFCP PHASE1:Hg19::chr7:45953003..45953022,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=3486 | |EntrezGene=entrezgene:3486 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | ||
|HGNC=5472 | |HGNC=HGNC:5472 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=-327bp_to_S56205_5end | |association_with_transcript=-327bp_to_S56205_5end | ||
|cluster_id=chr7:45953003..45953022,- | |||
|coexpression_cluster_id=C223 | |coexpression_cluster_id=C223 | ||
|description=CAGE_peak_17_at_IGFBP3_5end | |description=CAGE_peak_17_at_IGFBP3_5end | ||
Revision as of 10:25, 31 July 2015
| Short description: | p17@IGFBP3 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_17_at_IGFBP3_5end |
| Coexpression cluster: | C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte |
| Association with transcript: | -327bp_to_S56205_5end |
| EntrezGene: | 3486 |
| HGNC: | 5472 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p17@IGFBP3 |
|---|
0
5
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| GAG secreting cell | 1.98e-18 | 9 |
| carbohydrate secreting cell | 1.98e-18 | 9 |
| skin fibroblast | 4.91e-18 | 23 |
| fibroblast | 1.57e-16 | 76 |
| chondroblast | 3.42e-15 | 6 |
| chondrocyte | 3.42e-15 | 6 |
| extracellular matrix secreting cell | 1.30e-13 | 15 |
| stromal cell | 1.40e-12 | 28 |
| fibrocyte | 8.94e-11 | 3 |
| tendon cell | 8.94e-11 | 3 |
Showing 1 to 10 of 18 entries
| Ontology term | p-value | n |
|---|---|---|
| omentum | 2.66e-13 | 6 |
| peritoneum | 2.66e-13 | 6 |
| abdominal cavity | 2.66e-13 | 6 |
| visceral peritoneum | 2.66e-13 | 6 |
| skin of body | 1.29e-12 | 41 |
| cavity lining | 2.86e-12 | 12 |
| serous membrane | 2.86e-12 | 12 |
| integument | 6.81e-11 | 46 |
| integumental system | 6.81e-11 | 46 |
| dense regular connective tissue | 8.94e-11 | 3 |
Showing 1 to 10 of 15 entries
| Ontology term | p-value | n |
|---|---|---|
| musculoskeletal system disease | 2.60e-16 | 5 |
| myotonic disease | 2.60e-16 | 5 |
| muscle tissue disease | 2.60e-16 | 5 |
| myopathy | 2.60e-16 | 5 |
| muscular disease | 2.60e-16 | 5 |
| myotonic dystrophy | 2.60e-16 | 5 |
| mesenchymal cell neoplasm | 4.54e-07 | 2 |
Showing 1 to 7 of 7 entries
