FFCP PHASE1:Mm9::chr7:116925052..116925068,-: Difference between revisions
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{{FFCP|EntrezGene=78593|HGNC=|MCL_coexpression_id=251|UniProt=Q9JJR9|association_with_transcript=0bp_to_ENSMUST00000033331,NM_020610,uc009jef.1_5end|description=CAGE_peak_1_at_Nrip3_5end|id=chr7:116925052..116925068,-|ontology_enrichment_celltype=CL:0000117!8.13e-09!23;CL:0000337!8.13e-09!23;CL:0000540!3.10e-07!33;CL:0000047!3.10e-07!33;CL:0000031!3.10e-07!33;CL:0000404!3.10e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,4.26e-09,23;CL:0000337,4.26e-09,23;CL:0000540,5.87e-07,33;CL:0000047,5.87e-07,33;CL:0000031,5.87e-07,33;CL:0000404,5.87e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.42e-16!75;UBERON:0001016!4.42e-16!75;UBERON:0001049!1.57e-15!52;UBERON:0005068!1.57e-15!52;UBERON:0006241!1.57e-15!52;UBERON:0007135!1.57e-15!52;UBERON:0001017!2.20e-15!73;UBERON:0005743!2.20e-15!73;UBERON:0000955!4.08e-15!50;UBERON:0006238!4.08e-15!50;UBERON:0002616!1.90e-14!49;UBERON:0002020!2.45e-13!34;UBERON:0004121!4.46e-13!102;UBERON:0000924!4.46e-13!102;UBERON:0006601!4.46e-13!102;UBERON:0000033!6.20e-13!63;UBERON:0003080!1.01e-11!40;UBERON:0002780!3.74e-11!39;UBERON:0001890!3.74e-11!39;UBERON:0006240!3.74e-11!39;UBERON:0002346!4.05e-11!71;UBERON:0003075!4.05e-11!71;UBERON:0007284!4.05e-11!71;UBERON:0002791!6.63e-11!29;UBERON:0003528!6.63e-11!29;UBERON:0001893!6.63e-11!29;UBERON:0003056!1.06e-09!49;UBERON:0002021!2.69e-07!10;UBERON:0000411!2.69e-07!10;UBERON:0001950!2.69e-07!10;UBERON:0000956!3.24e-07!21;UBERON:0001869!3.24e-07!21;UBERON:0000203!3.24e-07!21;UBERON:0002619!6.57e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.42e-17,54;UBERON:0001016,1.06e-15,75;UBERON:0001049,2.45e-15,52;UBERON:0005068,2.45e-15,52;UBERON:0006241,2.45e-15,52;UBERON:0007135,2.45e-15,52;UBERON:0004121,3.21e-15,95;UBERON:0000924,3.21e-15,95;UBERON:0006601,3.21e-15,95;UBERON:0001017,6.28e-15,73;UBERON:0002020,5.30e-14,34;UBERON:0002346,1.49e-13,64;UBERON:0003075,1.49e-13,64;UBERON:0007284,1.49e-13,64;UBERON:0010371,4.66e-13,73;UBERON:0000955,1.01e-12,47;UBERON:0006238,1.01e-12,47;UBERON:0002616,5.07e-12,46;UBERON:0003528,3.20e-11,29;UBERON:0002791,3.20e-11,29;UBERON:0001893,3.20e-11,29;UBERON:0003080,7.16e-11,40;UBERON:0002780,2.95e-10,39;UBERON:0001890,2.95e-10,39;UBERON:0006240,2.95e-10,39;UBERON:0003056,2.09e-09,49;UBERON:0002021,2.91e-08,10;UBERON:0000411,2.91e-08,10;UBERON:0001950,2.91e-08,10;UBERON:0000956,4.82e-07,21;UBERON:0001869,4.82e-07,21;UBERON:0000203,4.82e-07,21;UBERON:0002619,5.53e-07,17|phase1_expression=0.320297694209588,3.14077866875425,3.63999391511629,6.35174843744343,10.0179145989269,3.3575854382378,1.86890112476421,0,17.0354353803517,26.9174205270293,0.513653904676515,0.239316476986009,2.39681021903688,0.699363219351979,10.6595123781012,14.7806945194573,30.7807226376385,0,0.137114433605739,0,19.474913444595,0,0,0.95995453676044,0.45881856213434,1.72269589234506,1.29228598847722,1.07735616342945,0,0.504060259519861,0.221730510655305,20.3209815507082,22.7573971406291,95.0890086092632,2.02196133825892,0.498703936075477,5.10423390655923,0,0,0,0.588231488031014,0,0,0.125896817975577,0.101376931219515,0,0,0.436050312760893,0.659058548203415,0.194429899074283,0.139986421625363,0,0.167782606057736,2.90144856804538,2.68875039313971,1.28629718017973,2.57880095944881,1.54701627683233,2.22548106945558,3.70293685490423,3.80298842103708,0,0.889294796111139,0,0,0,0.299600110518405,0.768436610643109,1.45165457231869,0.675029691658453,2.94454945891935,22.2807767834967,22.307722636113,3.06226998037385,2.97120960156533,0.919218786610021,138.74601005923,191.658694465867,169.27439964838,5.14356522147756,4.84884511092771,4.68822033501084,108.602186611537,79.9122906244986,146.07512487463,26.8112012781038,28.0472211174233,10.0655700745662,3.18050011999373,6.04572480854284,3.47837386442013,0,5.439770669662,1.07940638327563,0,0,4.63466586434781,0,0,0,1.97180787687353,0,0,0,0.649473123033642,0.760079596425296,0.505524445014783,3.53970027129086,0,0.593768556259299,0.346970653532272,0.304465478312141,0.230615497256059,0.452167921657868,0.940709657085638,0.125666591329675,3.95511948374998,0.433798070759735,7.96149496754887,0.808834249737046,6.18356251689102,3.87900202508178,0,55.9211322292055,39.585427587743,1.02182822083437,0.359445373517761,0.599902730993408,0.254140454146129,80.7371546391994,59.4750783664214,7.66491547888473,70.9203226384488,80.0389381443935,145.036055102573,112.595436569024,0.712875546952214,2.48813941220186,0.252722758433675,3.36706969418358,0,0,0,0.90422890701429,1.36072998302656,1.2811372028485,1.21812241927647,7.50239775143145,0,0.189106080167819,0.527853372491847,0.876782929710299,0.556094498451196,0.696504333044333,1.02891068203972,0,0,0.257347907114715,0,0.207125772535502,0.234526059981096,0,0.23674473558521,0.393528463494808,0.308534225774757,0,0.268273401399619,0.233530684734339,0.329119699826961,0.492502392237286,0.162137619091711,0.146199987425332,0.219550115291051,0.536825675041487,133.113537441093,23.9767746843733,0,0.5289011333270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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:78593 | |||
|HGNC= | |||
|MCL_coexpression_id=251 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9JJR9 | |||
|association_with_transcript=0bp_to_ENSMUST00000033331,NM_020610,uc009jef.1_5end | |||
|cluster_id=chr7:116925052..116925068,- | |||
|description=CAGE_peak_1_at_Nrip3_5end | |||
|id=chr7:116925052..116925068,- | |||
|ontology_enrichment_celltype=CL:0000117!8.13e-09!23;CL:0000337!8.13e-09!23;CL:0000540!3.10e-07!33;CL:0000047!3.10e-07!33;CL:0000031!3.10e-07!33;CL:0000404!3.10e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.26e-09,23;CL:0000337,4.26e-09,23;CL:0000540,5.87e-07,33;CL:0000047,5.87e-07,33;CL:0000031,5.87e-07,33;CL:0000404,5.87e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.42e-16!75;UBERON:0001016!4.42e-16!75;UBERON:0001049!1.57e-15!52;UBERON:0005068!1.57e-15!52;UBERON:0006241!1.57e-15!52;UBERON:0007135!1.57e-15!52;UBERON:0001017!2.20e-15!73;UBERON:0005743!2.20e-15!73;UBERON:0000955!4.08e-15!50;UBERON:0006238!4.08e-15!50;UBERON:0002616!1.90e-14!49;UBERON:0002020!2.45e-13!34;UBERON:0004121!4.46e-13!102;UBERON:0000924!4.46e-13!102;UBERON:0006601!4.46e-13!102;UBERON:0000033!6.20e-13!63;UBERON:0003080!1.01e-11!40;UBERON:0002780!3.74e-11!39;UBERON:0001890!3.74e-11!39;UBERON:0006240!3.74e-11!39;UBERON:0002346!4.05e-11!71;UBERON:0003075!4.05e-11!71;UBERON:0007284!4.05e-11!71;UBERON:0002791!6.63e-11!29;UBERON:0003528!6.63e-11!29;UBERON:0001893!6.63e-11!29;UBERON:0003056!1.06e-09!49;UBERON:0002021!2.69e-07!10;UBERON:0000411!2.69e-07!10;UBERON:0001950!2.69e-07!10;UBERON:0000956!3.24e-07!21;UBERON:0001869!3.24e-07!21;UBERON:0000203!3.24e-07!21;UBERON:0002619!6.57e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.42e-17,54;UBERON:0001016,1.06e-15,75;UBERON:0001049,2.45e-15,52;UBERON:0005068,2.45e-15,52;UBERON:0006241,2.45e-15,52;UBERON:0007135,2.45e-15,52;UBERON:0004121,3.21e-15,95;UBERON:0000924,3.21e-15,95;UBERON:0006601,3.21e-15,95;UBERON:0001017,6.28e-15,73;UBERON:0002020,5.30e-14,34;UBERON:0002346,1.49e-13,64;UBERON:0003075,1.49e-13,64;UBERON:0007284,1.49e-13,64;UBERON:0010371,4.66e-13,73;UBERON:0000955,1.01e-12,47;UBERON:0006238,1.01e-12,47;UBERON:0002616,5.07e-12,46;UBERON:0003528,3.20e-11,29;UBERON:0002791,3.20e-11,29;UBERON:0001893,3.20e-11,29;UBERON:0003080,7.16e-11,40;UBERON:0002780,2.95e-10,39;UBERON:0001890,2.95e-10,39;UBERON:0006240,2.95e-10,39;UBERON:0003056,2.09e-09,49;UBERON:0002021,2.91e-08,10;UBERON:0000411,2.91e-08,10;UBERON:0001950,2.91e-08,10;UBERON:0000956,4.82e-07,21;UBERON:0001869,4.82e-07,21;UBERON:0000203,4.82e-07,21;UBERON:0002619,5.53e-07,17 | |||
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| |||
|short_description=p1@Nrip3 | |||
}} |
Revision as of 00:49, 4 August 2015
Short description: | p1@Nrip3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nrip3_5end |
Coexpression cluster: | MCL_coexpression_mm9:251 |
Association with transcript: | 0bp_to_ENSMUST00000033331, NM_020610, uc009jef.1_5end |
EntrezGene: | 78593 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.26e-09 | 23 |
neuroblast (sensu Vertebrata) | 4.26e-09 | 23 |
neuron | 5.87e-07 | 33 |
neuronal stem cell | 5.87e-07 | 33 |
neuroblast | 5.87e-07 | 33 |
electrically signaling cell | 5.87e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 6.42e-17 | 54 |
nervous system | 1.06e-15 | 75 |
neural tube | 2.45e-15 | 52 |
neural rod | 2.45e-15 | 52 |
future spinal cord | 2.45e-15 | 52 |
neural keel | 2.45e-15 | 52 |
ectoderm-derived structure | 3.21e-15 | 95 |
ectoderm | 3.21e-15 | 95 |
presumptive ectoderm | 3.21e-15 | 95 |
central nervous system | 6.28e-15 | 73 |
gray matter | 5.30e-14 | 34 |
neurectoderm | 1.49e-13 | 64 |
neural plate | 1.49e-13 | 64 |
presumptive neural plate | 1.49e-13 | 64 |
ecto-epithelium | 4.66e-13 | 73 |
brain | 1.01e-12 | 47 |
future brain | 1.01e-12 | 47 |
regional part of brain | 5.07e-12 | 46 |
brain grey matter | 3.20e-11 | 29 |
regional part of telencephalon | 3.20e-11 | 29 |
telencephalon | 3.20e-11 | 29 |
anterior neural tube | 7.16e-11 | 40 |
regional part of forebrain | 2.95e-10 | 39 |
forebrain | 2.95e-10 | 39 |
future forebrain | 2.95e-10 | 39 |
pre-chordal neural plate | 2.09e-09 | 49 |
occipital lobe | 2.91e-08 | 10 |
visual cortex | 2.91e-08 | 10 |
neocortex | 2.91e-08 | 10 |
cerebral cortex | 4.82e-07 | 21 |
cerebral hemisphere | 4.82e-07 | 21 |
pallium | 4.82e-07 | 21 |
regional part of cerebral cortex | 5.53e-07 | 17 |