FFCP PHASE1:Mm9::chr5:24104540..24104584,-: Difference between revisions
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{{FFCP|EntrezGene=66993|HGNC=|MCL_coexpression_id=100|UniProt=|association_with_transcript=171bp_to_ENSMUST00000145565_5end|description=CAGE_peak_7_at_Smarcd3_5end|id=chr5:24104540..24104584,-|ontology_enrichment_celltype=CL:0000117!2.32e-15!23;CL:0000337!2.32e-15!23;CL:0000540!3.65e-13!33;CL:0000047!3.65e-13!33;CL:0000031!3.65e-13!33;CL:0000404!3.65e-13!33;CL:0000393!5.79e-11!39;CL:0000211!5.79e-11!39;CL:0002319!1.03e-09!43;CL:0000221!3.02e-09!44;CL:0000133!3.02e-09!44;CL:0000055!5.34e-08!50;CL:0002609!7.13e-07!6|ontology_enrichment_celltype_v019_2=CL:0000117,7.07e-28,23;CL:0000337,7.07e-28,23;CL:0000540,2.80e-18,33;CL:0000047,2.80e-18,33;CL:0000031,2.80e-18,33;CL:0000404,2.80e-18,33;CL:0002609,2.68e-17,6;CL:0000393,6.90e-15,39;CL:0000211,6.90e-15,39;CL:0002319,3.73e-13,43;CL:0000221,9.01e-13,44;CL:0000133,9.01e-13,44;CL:0002608,3.52e-09,3;CL:0000120,3.75e-09,3;CL:0002613,7.35e-09,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.87e-22!73;UBERON:0005743!4.87e-22!73;UBERON:0000073!7.51e-21!75;UBERON:0001016!7.51e-21!75;UBERON:0001049!7.73e-20!52;UBERON:0005068!7.73e-20!52;UBERON:0006241!7.73e-20!52;UBERON:0007135!7.73e-20!52;UBERON:0000955!4.28e-18!50;UBERON:0006238!4.28e-18!50;UBERON:0003080!5.97e-18!40;UBERON:0002020!2.08e-17!34;UBERON:0002780!2.24e-17!39;UBERON:0001890!2.24e-17!39;UBERON:0006240!2.24e-17!39;UBERON:0002616!2.29e-17!49;UBERON:0002346!5.55e-15!71;UBERON:0003075!5.55e-15!71;UBERON:0007284!5.55e-15!71;UBERON:0004121!1.07e-14!102;UBERON:0000924!1.07e-14!102;UBERON:0006601!1.07e-14!102;UBERON:0000033!1.09e-14!63;UBERON:0003056!1.27e-14!49;UBERON:0002791!8.85e-14!29;UBERON:0003528!8.85e-14!29;UBERON:0001893!8.85e-14!29;UBERON:0000956!5.00e-11!21;UBERON:0001869!5.00e-11!21;UBERON:0000203!5.00e-11!21;UBERON:0002619!5.71e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.00e-22,34;UBERON:0003528,5.72e-16,29;UBERON:0002791,5.72e-16,29;UBERON:0001893,5.72e-16,29;UBERON:0001017,1.87e-13,73;UBERON:0001049,3.35e-13,52;UBERON:0005068,3.35e-13,52;UBERON:0006241,3.35e-13,52;UBERON:0007135,3.35e-13,52;UBERON:0001016,5.84e-13,75;UBERON:0000073,1.48e-12,54;UBERON:0000956,1.69e-11,21;UBERON:0001869,1.69e-11,21;UBERON:0000203,1.69e-11,21;UBERON:0002780,4.70e-11,39;UBERON:0001890,4.70e-11,39;UBERON:0006240,4.70e-11,39;UBERON:0003080,1.07e-10,40;UBERON:0000955,5.20e-10,47;UBERON:0006238,5.20e-10,47;UBERON:0002346,5.98e-10,64;UBERON:0003075,5.98e-10,64;UBERON:0007284,5.98e-10,64;UBERON:0000369,3.34e-09,5;UBERON:0002435,3.34e-09,5;UBERON:0000204,3.34e-09,5;UBERON:0010082,3.34e-09,5;UBERON:0004121,3.57e-09,95;UBERON:0000924,3.57e-09,95;UBERON:0006601,3.57e-09,95;UBERON:0002616,6.77e-09,46;UBERON:0001948,1.31e-08,5;UBERON:0002315,1.31e-08,5;UBERON:0010371,3.19e-08,73;UBERON:0003056,3.67e-08,49;UBERON:0002240,3.57e-07,6;UBERON:0005174,3.57e-07,6;UBERON:0001137,3.57e-07,6;UBERON:0002619,6.73e-07,17|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0.286533439938757,0,5.46254444320914,5.28990979272033,4.43681982454325,0,0.889294796111139,0,0,0,0,0.384218305321555,17.1087860308988,15.6606888464761,17.0363218694619,2.28520787523043,1.54607978666129,5.75706756310284,4.02550978276593,7.35375029288017,0,0.638436690425939,0.768032666281217,4.48413378282659,4.11694396210843,3.12548022334056,0.837548997004143,0,0.916789486660861,0.589257170947335,1.99320353118744,3.54158947068071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520455980298408,0.304465478312141,0.230615497256059,0,0.117588707135705,0,0,0,0,0.161766849947409,0,0,0,0,0.628340120440365,0,0,0,0,0.748953197024114,0,8.92145900001337,0.695297280769106,0.767146371990992,0.41557608911912,0.486723789203273,0.101839363850316,0,0,0,0.520481771850815,0,0,0,0.0680364991513279,0,0.374806898238915,0,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0.234526059981096,0.180062061461015,0,0,0.154267112887378,0.232533944750408,0.268273401399619,0.116765342367169,0.16455984991348,0,0.0810688095458557,0,0,0.134206418760372,0.210289948564127,8.74689205223918,0,0,0.213288250535234,0,0,0,0.22237804384487,0,0,0,0,0,0,0,0,0,0.379335801906163,0,0,0.203651327845314,0,0.0701358198903186,0,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0.160550589987792,0.820481806145422,0.163934945376675,0.504941854408746,0,0,0,0.238968797952552,0.222798674082394,0.283076530788832,0.404810701674894,0.292255857911312,0,1.28528526568723,0,0.534196811001766,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0.340439605753788,0.36012218806262,0.258717367565509,0.643011105094777,0.354680467284547,0.356737635204141,0.164549020602121,0.608929898229199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218362563746178,0,0.0826534557253359,0.26175594198403,0,0,0,0,0,0,0.645799117388655,0,0.11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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:66993 | |||
|HGNC= | |||
|MCL_coexpression_id=100 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=171bp_to_ENSMUST00000145565_5end | |||
|cluster_id=chr5:24104540..24104584,- | |||
|description=CAGE_peak_7_at_Smarcd3_5end | |||
|id=chr5:24104540..24104584,- | |||
|ontology_enrichment_celltype=CL:0000117!2.32e-15!23;CL:0000337!2.32e-15!23;CL:0000540!3.65e-13!33;CL:0000047!3.65e-13!33;CL:0000031!3.65e-13!33;CL:0000404!3.65e-13!33;CL:0000393!5.79e-11!39;CL:0000211!5.79e-11!39;CL:0002319!1.03e-09!43;CL:0000221!3.02e-09!44;CL:0000133!3.02e-09!44;CL:0000055!5.34e-08!50;CL:0002609!7.13e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.07e-28,23;CL:0000337,7.07e-28,23;CL:0000540,2.80e-18,33;CL:0000047,2.80e-18,33;CL:0000031,2.80e-18,33;CL:0000404,2.80e-18,33;CL:0002609,2.68e-17,6;CL:0000393,6.90e-15,39;CL:0000211,6.90e-15,39;CL:0002319,3.73e-13,43;CL:0000221,9.01e-13,44;CL:0000133,9.01e-13,44;CL:0002608,3.52e-09,3;CL:0000120,3.75e-09,3;CL:0002613,7.35e-09,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.87e-22!73;UBERON:0005743!4.87e-22!73;UBERON:0000073!7.51e-21!75;UBERON:0001016!7.51e-21!75;UBERON:0001049!7.73e-20!52;UBERON:0005068!7.73e-20!52;UBERON:0006241!7.73e-20!52;UBERON:0007135!7.73e-20!52;UBERON:0000955!4.28e-18!50;UBERON:0006238!4.28e-18!50;UBERON:0003080!5.97e-18!40;UBERON:0002020!2.08e-17!34;UBERON:0002780!2.24e-17!39;UBERON:0001890!2.24e-17!39;UBERON:0006240!2.24e-17!39;UBERON:0002616!2.29e-17!49;UBERON:0002346!5.55e-15!71;UBERON:0003075!5.55e-15!71;UBERON:0007284!5.55e-15!71;UBERON:0004121!1.07e-14!102;UBERON:0000924!1.07e-14!102;UBERON:0006601!1.07e-14!102;UBERON:0000033!1.09e-14!63;UBERON:0003056!1.27e-14!49;UBERON:0002791!8.85e-14!29;UBERON:0003528!8.85e-14!29;UBERON:0001893!8.85e-14!29;UBERON:0000956!5.00e-11!21;UBERON:0001869!5.00e-11!21;UBERON:0000203!5.00e-11!21;UBERON:0002619!5.71e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.00e-22,34;UBERON:0003528,5.72e-16,29;UBERON:0002791,5.72e-16,29;UBERON:0001893,5.72e-16,29;UBERON:0001017,1.87e-13,73;UBERON:0001049,3.35e-13,52;UBERON:0005068,3.35e-13,52;UBERON:0006241,3.35e-13,52;UBERON:0007135,3.35e-13,52;UBERON:0001016,5.84e-13,75;UBERON:0000073,1.48e-12,54;UBERON:0000956,1.69e-11,21;UBERON:0001869,1.69e-11,21;UBERON:0000203,1.69e-11,21;UBERON:0002780,4.70e-11,39;UBERON:0001890,4.70e-11,39;UBERON:0006240,4.70e-11,39;UBERON:0003080,1.07e-10,40;UBERON:0000955,5.20e-10,47;UBERON:0006238,5.20e-10,47;UBERON:0002346,5.98e-10,64;UBERON:0003075,5.98e-10,64;UBERON:0007284,5.98e-10,64;UBERON:0000369,3.34e-09,5;UBERON:0002435,3.34e-09,5;UBERON:0000204,3.34e-09,5;UBERON:0010082,3.34e-09,5;UBERON:0004121,3.57e-09,95;UBERON:0000924,3.57e-09,95;UBERON:0006601,3.57e-09,95;UBERON:0002616,6.77e-09,46;UBERON:0001948,1.31e-08,5;UBERON:0002315,1.31e-08,5;UBERON:0010371,3.19e-08,73;UBERON:0003056,3.67e-08,49;UBERON:0002240,3.57e-07,6;UBERON:0005174,3.57e-07,6;UBERON:0001137,3.57e-07,6;UBERON:0002619,6.73e-07,17 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0.286533439938757,0,5.46254444320914,5.28990979272033,4.43681982454325,0,0.889294796111139,0,0,0,0,0.384218305321555,17.1087860308988,15.6606888464761,17.0363218694619,2.28520787523043,1.54607978666129,5.75706756310284,4.02550978276593,7.35375029288017,0,0.638436690425939,0.768032666281217,4.48413378282659,4.11694396210843,3.12548022334056,0.837548997004143,0,0.916789486660861,0.589257170947335,1.99320353118744,3.54158947068071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520455980298408,0.304465478312141,0.230615497256059,0,0.117588707135705,0,0,0,0,0.161766849947409,0,0,0,0,0.628340120440365,0,0,0,0,0.748953197024114,0,8.92145900001337,0.695297280769106,0.767146371990992,0.41557608911912,0.486723789203273,0.101839363850316,0,0,0,0.520481771850815,0,0,0,0.0680364991513279,0,0.374806898238915,0,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0.234526059981096,0.180062061461015,0,0,0.154267112887378,0.232533944750408,0.268273401399619,0.116765342367169,0.16455984991348,0,0.0810688095458557,0,0,0.134206418760372,0.210289948564127,8.74689205223918,0,0,0.213288250535234,0,0,0,0.22237804384487,0,0,0,0,0,0,0,0,0,0.379335801906163,0,0,0.203651327845314,0,0.0701358198903186,0,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0.160550589987792,0.820481806145422,0.163934945376675,0.504941854408746,0,0,0,0.238968797952552,0.222798674082394,0.283076530788832,0.404810701674894,0.292255857911312,0,1.28528526568723,0,0.534196811001766,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0.340439605753788,0.36012218806262,0.258717367565509,0.643011105094777,0.354680467284547,0.356737635204141,0.164549020602121,0.608929898229199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218362563746178,0,0.0826534557253359,0.26175594198403,0,0,0,0,0,0,0.645799117388655,0,0.117357238645754,0,0.314578033277133,0.241584120826006,0.576060012515731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.19318959403219,0,0,0,0,1.6942555278512,1.38097570952153,1.14579102687879,0.343706364687375,0.685082519770642,0.755393897389701,0.675022500231806,0,0.453142408984205,0.51776031175182,0.103787347584177,1.19707462020309,0,1.21553358534147,0.209613162627982,0.183843508450014,1.11123363900808,0.206035057238894,1.60459604795908,0.758091635291392,1.01391719956096,0.565879024158229,0.37456602987953,1.08842759088278,0.976402972245426,0,1.0429589335037,0.77163688185482,0.412085900803307,0.588795680537589,0,0.354951612318675,0.953744759789284,1.16277133305863,0.564656282491984,1.09998990259179,1.64635175585495,0.789209134313529,1.08643291076689,0.561142271657738,0.593175090620871,1.0835493061312,0.818462086339379,0.77468420592983,0.578719832943424,4.24677982494508,0.935726433781634,0.429742108096597,0,0,0 | |||
|short_description=p7@Smarcd3 | |||
}} |
Revision as of 05:14, 4 August 2015
Short description: | p7@Smarcd3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Smarcd3_5end |
Coexpression cluster: | MCL_coexpression_mm9:100 |
Association with transcript: | 171bp_to_ENSMUST00000145565_5end |
EntrezGene: | 66993 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.07e-28 | 23 |
neuroblast (sensu Vertebrata) | 7.07e-28 | 23 |
neuron | 2.80e-18 | 33 |
neuronal stem cell | 2.80e-18 | 33 |
neuroblast | 2.80e-18 | 33 |
electrically signaling cell | 2.80e-18 | 33 |
neuron of cerebral cortex | 2.68e-17 | 6 |
electrically responsive cell | 6.90e-15 | 39 |
electrically active cell | 6.90e-15 | 39 |
neural cell | 3.73e-13 | 43 |
ectodermal cell | 9.01e-13 | 44 |
neurectodermal cell | 9.01e-13 | 44 |
hippocampal neuron | 3.52e-09 | 3 |
granule cell | 3.75e-09 | 3 |
striatum neuron | 7.35e-09 | 3 |