FFCP PHASE1:Mm9::chr14:49282415..49282426,-: Difference between revisions
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{{FFCP|EntrezGene=18424|HGNC=|MCL_coexpression_id=53|UniProt=Q8VD35|association_with_transcript=120bp_to_ENSMUST00000122009,NM_144841,uc007tjq.2_5end|description=CAGE_peak_4_at_Otx2_5end|id=chr14:49282415..49282426,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000120,5.98e-13,3;CL:0002613,7.91e-12,3;CL:0000128,2.84e-10,6;CL:0000126,2.84e-10,6;CL:0000127,2.84e-10,6;CL:0002605,8.62e-09,2;CL:0002604,8.62e-09,2;CL:0002453,9.77e-08,8;CL:0002319,2.23e-07,43;CL:0000221,3.56e-07,44;CL:0000133,3.56e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!4.70e-16!63;UBERON:0003056!3.87e-14!49;UBERON:0000970!5.37e-13!9;UBERON:0000019!5.37e-13!9;UBERON:0000047!5.37e-13!9;UBERON:0004088!5.37e-13!9;UBERON:0002104!5.37e-13!9;UBERON:0001456!5.37e-13!9;UBERON:0003072!5.37e-13!9;UBERON:0003071!5.37e-13!9;UBERON:0004128!5.37e-13!9;UBERON:0000020!9.26e-13!12;UBERON:0001032!9.26e-13!12;UBERON:0004456!9.26e-13!12;UBERON:0005085!1.56e-11!13;UBERON:0004121!6.40e-11!102;UBERON:0000924!6.40e-11!102;UBERON:0006601!6.40e-11!102;UBERON:0001444!3.60e-10!11;UBERON:0007811!3.93e-09!86;UBERON:0002346!7.36e-09!71;UBERON:0003075!7.36e-09!71;UBERON:0007284!7.36e-09!71;UBERON:0000955!6.58e-08!50;UBERON:0006238!6.58e-08!50;UBERON:0001017!1.01e-07!73;UBERON:0005743!1.01e-07!73;UBERON:0000153!1.40e-07!94;UBERON:0002616!2.35e-07!49;UBERON:0000073!2.58e-07!75;UBERON:0001016!2.58e-07!75|ontology_enrichment_uberon_v019_2=UBERON:0000970,4.34e-28,9;UBERON:0000019,4.34e-28,9;UBERON:0000047,4.34e-28,9;UBERON:0010312,4.34e-28,9;UBERON:0004088,4.34e-28,9;UBERON:0002104,4.34e-28,9;UBERON:0001456,4.34e-28,9;UBERON:0003072,4.34e-28,9;UBERON:0004128,4.34e-28,9;UBERON:0003071,4.34e-28,9;UBERON:0001444,8.71e-23,11;UBERON:0000020,8.51e-21,12;UBERON:0001032,8.51e-21,12;UBERON:0004456,8.51e-21,12;UBERON:0000033,4.12e-19,13;UBERON:0005085,4.12e-19,13;UBERON:0003056,2.52e-13,49;UBERON:0004121,9.36e-12,95;UBERON:0000924,9.36e-12,95;UBERON:0006601,9.36e-12,95;UBERON:0002346,1.32e-09,64;UBERON:0003075,1.32e-09,64;UBERON:0007284,1.32e-09,64;UBERON:0010371,4.17e-08,73;UBERON:0000369,2.73e-07,5;UBERON:0002435,2.73e-07,5;UBERON:0000204,2.73e-07,5;UBERON:0010082,2.73e-07,5|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,2.19686182734472,3.4997381833371,1.1198913730029,1.43752564364972,0,0,0,0,0,0,5.46254444320914,8.99284664762456,6.33831403506179,0.338844532069132,0,0,0,0,0,0,0,0,0,0,0,0.367472397644862,0.287536413054709,0,0,0.510749352340751,0.153606533256243,1.18697658957174,1.9212405156506,1.56274011167028,0,0,0.30559649555362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281686839553361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.299581278809645,0,0.125654352112864,0,0,0.62336413367868,0.162241263067758,0,0,0,0.210441855886474,1.82168620147785,4.59804208866946,9.00310649026746,10.0972227949929,15.1041028115948,27.8006773018124,34.1074277397413,1.29351685369508,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720244376125241,1.16422815404479,0.428674070063185,0.532020700926821,0.178368817602071,0.164549020602121,0,0,0,0,0,0,0,0.119372344003136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54178128274764,4.79829622325583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.830298780673413,0.399024873401031,0.341467211508268,0,0.628839487883947,0.551530525350042,0.44449345560323,0.824140228955577,0,0,0.25347929989024,0.377252682772152,0.187283014939765,0.128050304809739,0.34461281373368,0,0.115884325944855,0.77163688185482,0,0.294397840268795,0,0.354951612318675,0,0.581385666529314,0.188218760830661,0.338458431566706,1.09756783723664,0.263069711437843,0.407412341537585,0,0,0.591026894253381,0.409231043169689,0.309873682371932,0.385813221962283,1.49886346762768,0,0.429742108096597,0,0,0|short_description=p4@Otx2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18424 | |||
|HGNC= | |||
|MCL_coexpression_id=53 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8VD35 | |||
|association_with_transcript=120bp_to_ENSMUST00000122009,NM_144841,uc007tjq.2_5end | |||
|cluster_id=chr14:49282415..49282426,- | |||
|description=CAGE_peak_4_at_Otx2_5end | |||
|id=chr14:49282415..49282426,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000120,5.98e-13,3;CL:0002613,7.91e-12,3;CL:0000128,2.84e-10,6;CL:0000126,2.84e-10,6;CL:0000127,2.84e-10,6;CL:0002605,8.62e-09,2;CL:0002604,8.62e-09,2;CL:0002453,9.77e-08,8;CL:0002319,2.23e-07,43;CL:0000221,3.56e-07,44;CL:0000133,3.56e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!4.70e-16!63;UBERON:0003056!3.87e-14!49;UBERON:0000970!5.37e-13!9;UBERON:0000019!5.37e-13!9;UBERON:0000047!5.37e-13!9;UBERON:0004088!5.37e-13!9;UBERON:0002104!5.37e-13!9;UBERON:0001456!5.37e-13!9;UBERON:0003072!5.37e-13!9;UBERON:0003071!5.37e-13!9;UBERON:0004128!5.37e-13!9;UBERON:0000020!9.26e-13!12;UBERON:0001032!9.26e-13!12;UBERON:0004456!9.26e-13!12;UBERON:0005085!1.56e-11!13;UBERON:0004121!6.40e-11!102;UBERON:0000924!6.40e-11!102;UBERON:0006601!6.40e-11!102;UBERON:0001444!3.60e-10!11;UBERON:0007811!3.93e-09!86;UBERON:0002346!7.36e-09!71;UBERON:0003075!7.36e-09!71;UBERON:0007284!7.36e-09!71;UBERON:0000955!6.58e-08!50;UBERON:0006238!6.58e-08!50;UBERON:0001017!1.01e-07!73;UBERON:0005743!1.01e-07!73;UBERON:0000153!1.40e-07!94;UBERON:0002616!2.35e-07!49;UBERON:0000073!2.58e-07!75;UBERON:0001016!2.58e-07!75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,4.34e-28,9;UBERON:0000019,4.34e-28,9;UBERON:0000047,4.34e-28,9;UBERON:0010312,4.34e-28,9;UBERON:0004088,4.34e-28,9;UBERON:0002104,4.34e-28,9;UBERON:0001456,4.34e-28,9;UBERON:0003072,4.34e-28,9;UBERON:0004128,4.34e-28,9;UBERON:0003071,4.34e-28,9;UBERON:0001444,8.71e-23,11;UBERON:0000020,8.51e-21,12;UBERON:0001032,8.51e-21,12;UBERON:0004456,8.51e-21,12;UBERON:0000033,4.12e-19,13;UBERON:0005085,4.12e-19,13;UBERON:0003056,2.52e-13,49;UBERON:0004121,9.36e-12,95;UBERON:0000924,9.36e-12,95;UBERON:0006601,9.36e-12,95;UBERON:0002346,1.32e-09,64;UBERON:0003075,1.32e-09,64;UBERON:0007284,1.32e-09,64;UBERON:0010371,4.17e-08,73;UBERON:0000369,2.73e-07,5;UBERON:0002435,2.73e-07,5;UBERON:0000204,2.73e-07,5;UBERON:0010082,2.73e-07,5 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,2.19686182734472,3.4997381833371,1.1198913730029,1.43752564364972,0,0,0,0,0,0,5.46254444320914,8.99284664762456,6.33831403506179,0.338844532069132,0,0,0,0,0,0,0,0,0,0,0,0.367472397644862,0.287536413054709,0,0,0.510749352340751,0.153606533256243,1.18697658957174,1.9212405156506,1.56274011167028,0,0,0.30559649555362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281686839553361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.299581278809645,0,0.125654352112864,0,0,0.62336413367868,0.162241263067758,0,0,0,0.210441855886474,1.82168620147785,4.59804208866946,9.00310649026746,10.0972227949929,15.1041028115948,27.8006773018124,34.1074277397413,1.29351685369508,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720244376125241,1.16422815404479,0.428674070063185,0.532020700926821,0.178368817602071,0.164549020602121,0,0,0,0,0,0,0,0.119372344003136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54178128274764,4.79829622325583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.830298780673413,0.399024873401031,0.341467211508268,0,0.628839487883947,0.551530525350042,0.44449345560323,0.824140228955577,0,0,0.25347929989024,0.377252682772152,0.187283014939765,0.128050304809739,0.34461281373368,0,0.115884325944855,0.77163688185482,0,0.294397840268795,0,0.354951612318675,0,0.581385666529314,0.188218760830661,0.338458431566706,1.09756783723664,0.263069711437843,0.407412341537585,0,0,0.591026894253381,0.409231043169689,0.309873682371932,0.385813221962283,1.49886346762768,0,0.429742108096597,0,0,0 | |||
|short_description=p4@Otx2 | |||
}} |
Revision as of 08:57, 4 August 2015
Short description: | p4@Otx2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Otx2_5end |
Coexpression cluster: | MCL_coexpression_mm9:53 |
Association with transcript: | 120bp_to_ENSMUST00000122009, NM_144841, uc007tjq.2_5end |
EntrezGene: | 18424 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granule cell | 5.98e-13 | 3 |
striatum neuron | 7.91e-12 | 3 |
oligodendrocyte | 2.84e-10 | 6 |
macroglial cell | 2.84e-10 | 6 |
astrocyte | 2.84e-10 | 6 |
astrocyte of the cerebral cortex | 8.62e-09 | 2 |
astrocyte of the hippocampus | 8.62e-09 | 2 |
oligodendrocyte precursor cell | 9.77e-08 | 8 |
neural cell | 2.23e-07 | 43 |
ectodermal cell | 3.56e-07 | 44 |
neurectodermal cell | 3.56e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
eye | 4.34e-28 | 9 |
camera-type eye | 4.34e-28 | 9 |
simple eye | 4.34e-28 | 9 |
immature eye | 4.34e-28 | 9 |
ocular region | 4.34e-28 | 9 |
visual system | 4.34e-28 | 9 |
face | 4.34e-28 | 9 |
optic cup | 4.34e-28 | 9 |
optic vesicle | 4.34e-28 | 9 |
eye primordium | 4.34e-28 | 9 |
subdivision of head | 8.71e-23 | 11 |
sense organ | 8.51e-21 | 12 |
sensory system | 8.51e-21 | 12 |
entire sense organ system | 8.51e-21 | 12 |
head | 4.12e-19 | 13 |
ectodermal placode | 4.12e-19 | 13 |
pre-chordal neural plate | 2.52e-13 | 49 |
ectoderm-derived structure | 9.36e-12 | 95 |
ectoderm | 9.36e-12 | 95 |
presumptive ectoderm | 9.36e-12 | 95 |
neurectoderm | 1.32e-09 | 64 |
neural plate | 1.32e-09 | 64 |
presumptive neural plate | 1.32e-09 | 64 |
ecto-epithelium | 4.17e-08 | 73 |
corpus striatum | 2.73e-07 | 5 |
striatum | 2.73e-07 | 5 |
ventral part of telencephalon | 2.73e-07 | 5 |
future corpus striatum | 2.73e-07 | 5 |