FFCP PHASE1:Mm9::chr15:72640395..72640443,-: Difference between revisions
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{{FFCP|EntrezGene=353342|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=310bp_to_NR_002864,uc007wbo.1_5end|description=CAGE_peak_1_at_Peg13_5end|id=chr15:72640395..72640443,-|ontology_enrichment_celltype=CL:0000117!2.34e-10!23;CL:0000337!2.34e-10!23;CL:0000540!4.22e-08!33;CL:0000047!4.22e-08!33;CL:0000031!4.22e-08!33;CL:0000404!4.22e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.33e-10,23;CL:0000337,2.33e-10,23;CL:0000540,4.21e-08,33;CL:0000047,4.21e-08,33;CL:0000031,4.21e-08,33;CL:0000404,4.21e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!6.66e-24!71;UBERON:0003075!6.66e-24!71;UBERON:0007284!6.66e-24!71;UBERON:0000033!1.00e-21!63;UBERON:0004121!1.37e-20!102;UBERON:0000924!1.37e-20!102;UBERON:0006601!1.37e-20!102;UBERON:0001049!1.61e-19!52;UBERON:0005068!1.61e-19!52;UBERON:0006241!1.61e-19!52;UBERON:0007135!1.61e-19!52;UBERON:0000955!2.66e-19!50;UBERON:0006238!2.66e-19!50;UBERON:0002616!1.25e-18!49;UBERON:0001017!3.86e-18!73;UBERON:0005743!3.86e-18!73;UBERON:0000073!2.62e-17!75;UBERON:0001016!2.62e-17!75;UBERON:0003056!2.80e-17!49;UBERON:0003080!1.22e-15!40;UBERON:0002780!6.05e-15!39;UBERON:0001890!6.05e-15!39;UBERON:0006240!6.05e-15!39;UBERON:0002020!8.38e-14!34;UBERON:0002791!6.83e-12!29;UBERON:0003528!6.83e-12!29;UBERON:0001893!6.83e-12!29;UBERON:0007811!4.63e-08!86;UBERON:0004111!6.53e-08!122;UBERON:0000956!1.05e-07!21;UBERON:0001869!1.05e-07!21;UBERON:0000203!1.05e-07!21;UBERON:0000153!2.03e-07!94;UBERON:0002021!5.17e-07!10;UBERON:0000411!5.17e-07!10;UBERON:0001950!5.17e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.68e-21,54;UBERON:0002346,1.10e-20,64;UBERON:0003075,1.10e-20,64;UBERON:0007284,1.10e-20,64;UBERON:0001049,1.61e-19,52;UBERON:0005068,1.61e-19,52;UBERON:0006241,1.61e-19,52;UBERON:0007135,1.61e-19,52;UBERON:0010314,7.88e-19,92;UBERON:0001017,3.86e-18,73;UBERON:0010371,4.18e-18,73;UBERON:0004121,1.74e-17,95;UBERON:0000924,1.74e-17,95;UBERON:0006601,1.74e-17,95;UBERON:0000955,2.15e-17,47;UBERON:0006238,2.15e-17,47;UBERON:0001016,2.61e-17,75;UBERON:0003056,2.79e-17,49;UBERON:0002616,9.67e-17,46;UBERON:0003080,1.22e-15,40;UBERON:0002780,6.05e-15,39;UBERON:0001890,6.05e-15,39;UBERON:0006240,6.05e-15,39;UBERON:0002020,8.37e-14,34;UBERON:0003528,6.82e-12,29;UBERON:0002791,6.82e-12,29;UBERON:0001893,6.82e-12,29;UBERON:0004111,6.58e-08,122;UBERON:0000956,1.05e-07,21;UBERON:0001869,1.05e-07,21;UBERON:0000203,1.05e-07,21;UBERON:0002021,5.17e-07,10;UBERON:0000411,5.17e-07,10;UBERON:0001950,5.17e-07,10|phase1_expression=19.6983081938897,1.04692622291808,0.909998478779072,2.72217790176147,1.00179145989269,0.671517087647559,1.86890112476421,15.4947988129892,6.335492496825,5.38348410540585,1.19852577757853,0.8774937489487,29.2753248182362,19.5821701418554,4.99664642723494,6.2767332890846,0.699561878128147,29.9689057090326,34.0043795342232,32.2536135366503,23.8971645324506,3.27660138962921,1.82839852397255,2.55987876469451,4.12936705920906,1.72269589234506,1.29228598847722,0.646413698057667,3.23039813075836,1.51218077855958,1.10865255327652,1.27006134691926,4.30545351309199,0,1.1554064790051,0.831173226792462,1.22501613757421,41.8531630736908,30.4720784364282,45.5465657257204,85.2935657644971,60.7910481613017,55.3481802455515,22.1578399637016,20.0726323814639,6.42413632565885,10.1710874765245,4.36050312760893,2.19686182734472,8.94377535741704,3.77963338388479,1.43752564364972,24.831825696545,31.1905721064878,21.1739093459752,6.17422646486273,7.16333599846892,9.28209766099396,52.1976469017762,81.9936017871651,66.5522973681488,6.09920157724438,8.00365316500025,8.09909745553259,6.92206453796882,7.104801149461,9.28760342607055,1.92109152660777,21.8785081970888,29.7013064329719,27.7628948983824,50.2745732550694,34.8972294703549,29.275301012374,31.8206963780545,29.4150011715207,160.769186259107,92.3179454355907,174.650628312349,69.8997324970027,77.490034131241,55.7377306495733,90.7344746754488,112.552522006336,135.837642273584,35.9446874277875,50.1148316412842,52.9374426143854,6.43672643332064,13.2250230186875,46.3783181922684,9.46466264679525,2.03991400112325,1.07940638327563,0.649776417447669,1.34408066129201,9.40977614882737,19.2586264513205,6.23486411046885,8.12681021373782,24.6475984609191,0,0,0,1.29894624606728,2.02687892380079,2.02209778005913,5.93756174539112,28.4831672011889,118.011500556536,30.5334175108399,52.9769932263126,48.1986389265162,51.2456977878917,50.0927892398102,34.5583126156608,7.41584903203122,63.6237170447611,13.2691582792481,8.41187619726528,9.27534377533653,9.69750506270444,22.3670113461747,203.775434720037,148.707161837553,18.13745091981,24.4422853992077,11.3981518888747,17.662761563156,295.237350266906,204.502769459926,87.9580464790051,210.501251752847,140.899216989012,217.761870698419,156.887301386522,10.7949725681335,16.4217201205323,15.1633655060205,51.7686965480726,11.7108398666433,14.4838325793088,23.7682011343061,24.866294942893,33.9502130765126,38.9465709665943,31.7648846257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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:353342 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=310bp_to_NR_002864,uc007wbo.1_5end | |||
|cluster_id=chr15:72640395..72640443,- | |||
|description=CAGE_peak_1_at_Peg13_5end | |||
|id=chr15:72640395..72640443,- | |||
|ontology_enrichment_celltype=CL:0000117!2.34e-10!23;CL:0000337!2.34e-10!23;CL:0000540!4.22e-08!33;CL:0000047!4.22e-08!33;CL:0000031!4.22e-08!33;CL:0000404!4.22e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.33e-10,23;CL:0000337,2.33e-10,23;CL:0000540,4.21e-08,33;CL:0000047,4.21e-08,33;CL:0000031,4.21e-08,33;CL:0000404,4.21e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!6.66e-24!71;UBERON:0003075!6.66e-24!71;UBERON:0007284!6.66e-24!71;UBERON:0000033!1.00e-21!63;UBERON:0004121!1.37e-20!102;UBERON:0000924!1.37e-20!102;UBERON:0006601!1.37e-20!102;UBERON:0001049!1.61e-19!52;UBERON:0005068!1.61e-19!52;UBERON:0006241!1.61e-19!52;UBERON:0007135!1.61e-19!52;UBERON:0000955!2.66e-19!50;UBERON:0006238!2.66e-19!50;UBERON:0002616!1.25e-18!49;UBERON:0001017!3.86e-18!73;UBERON:0005743!3.86e-18!73;UBERON:0000073!2.62e-17!75;UBERON:0001016!2.62e-17!75;UBERON:0003056!2.80e-17!49;UBERON:0003080!1.22e-15!40;UBERON:0002780!6.05e-15!39;UBERON:0001890!6.05e-15!39;UBERON:0006240!6.05e-15!39;UBERON:0002020!8.38e-14!34;UBERON:0002791!6.83e-12!29;UBERON:0003528!6.83e-12!29;UBERON:0001893!6.83e-12!29;UBERON:0007811!4.63e-08!86;UBERON:0004111!6.53e-08!122;UBERON:0000956!1.05e-07!21;UBERON:0001869!1.05e-07!21;UBERON:0000203!1.05e-07!21;UBERON:0000153!2.03e-07!94;UBERON:0002021!5.17e-07!10;UBERON:0000411!5.17e-07!10;UBERON:0001950!5.17e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.68e-21,54;UBERON:0002346,1.10e-20,64;UBERON:0003075,1.10e-20,64;UBERON:0007284,1.10e-20,64;UBERON:0001049,1.61e-19,52;UBERON:0005068,1.61e-19,52;UBERON:0006241,1.61e-19,52;UBERON:0007135,1.61e-19,52;UBERON:0010314,7.88e-19,92;UBERON:0001017,3.86e-18,73;UBERON:0010371,4.18e-18,73;UBERON:0004121,1.74e-17,95;UBERON:0000924,1.74e-17,95;UBERON:0006601,1.74e-17,95;UBERON:0000955,2.15e-17,47;UBERON:0006238,2.15e-17,47;UBERON:0001016,2.61e-17,75;UBERON:0003056,2.79e-17,49;UBERON:0002616,9.67e-17,46;UBERON:0003080,1.22e-15,40;UBERON:0002780,6.05e-15,39;UBERON:0001890,6.05e-15,39;UBERON:0006240,6.05e-15,39;UBERON:0002020,8.37e-14,34;UBERON:0003528,6.82e-12,29;UBERON:0002791,6.82e-12,29;UBERON:0001893,6.82e-12,29;UBERON:0004111,6.58e-08,122;UBERON:0000956,1.05e-07,21;UBERON:0001869,1.05e-07,21;UBERON:0000203,1.05e-07,21;UBERON:0002021,5.17e-07,10;UBERON:0000411,5.17e-07,10;UBERON:0001950,5.17e-07,10 | |||
|phase1_expression=19.6983081938897,1.04692622291808,0.909998478779072,2.72217790176147,1.00179145989269,0.671517087647559,1.86890112476421,15.4947988129892,6.335492496825,5.38348410540585,1.19852577757853,0.8774937489487,29.2753248182362,19.5821701418554,4.99664642723494,6.2767332890846,0.699561878128147,29.9689057090326,34.0043795342232,32.2536135366503,23.8971645324506,3.27660138962921,1.82839852397255,2.55987876469451,4.12936705920906,1.72269589234506,1.29228598847722,0.646413698057667,3.23039813075836,1.51218077855958,1.10865255327652,1.27006134691926,4.30545351309199,0,1.1554064790051,0.831173226792462,1.22501613757421,41.8531630736908,30.4720784364282,45.5465657257204,85.2935657644971,60.7910481613017,55.3481802455515,22.1578399637016,20.0726323814639,6.42413632565885,10.1710874765245,4.36050312760893,2.19686182734472,8.94377535741704,3.77963338388479,1.43752564364972,24.831825696545,31.1905721064878,21.1739093459752,6.17422646486273,7.16333599846892,9.28209766099396,52.1976469017762,81.9936017871651,66.5522973681488,6.09920157724438,8.00365316500025,8.09909745553259,6.92206453796882,7.104801149461,9.28760342607055,1.92109152660777,21.8785081970888,29.7013064329719,27.7628948983824,50.2745732550694,34.8972294703549,29.275301012374,31.8206963780545,29.4150011715207,160.769186259107,92.3179454355907,174.650628312349,69.8997324970027,77.490034131241,55.7377306495733,90.7344746754488,112.552522006336,135.837642273584,35.9446874277875,50.1148316412842,52.9374426143854,6.43672643332064,13.2250230186875,46.3783181922684,9.46466264679525,2.03991400112325,1.07940638327563,0.649776417447669,1.34408066129201,9.40977614882737,19.2586264513205,6.23486411046885,8.12681021373782,24.6475984609191,0,0,0,1.29894624606728,2.02687892380079,2.02209778005913,5.93756174539112,28.4831672011889,118.011500556536,30.5334175108399,52.9769932263126,48.1986389265162,51.2456977878917,50.0927892398102,34.5583126156608,7.41584903203122,63.6237170447611,13.2691582792481,8.41187619726528,9.27534377533653,9.69750506270444,22.3670113461747,203.775434720037,148.707161837553,18.13745091981,24.4422853992077,11.3981518888747,17.662761563156,295.237350266906,204.502769459926,87.9580464790051,210.501251752847,140.899216989012,217.761870698419,156.887301386522,10.7949725681335,16.4217201205323,15.1633655060205,51.7686965480726,11.7108398666433,14.4838325793088,23.7682011343061,24.866294942893,33.9502130765126,38.9465709665943,31.7648846257481,99.8595011052601,9.91612767491074,10.4008344092301,10.381116325673,9.20622076195814,14.1804097105055,16.3678518265418,12.9642745937004,11.3449532086541,4.21327912387941,7.46308930632674,2.84163499395593,6.42089894860056,9.61556845922494,9.54328925743379,9.46978942340841,9.05115466038058,10.3358965634543,10.2314935690179,9.12129564758705,12.0268302638185,8.3925523455875,18.2225885127796,21.4832345296518,26.6083977114105,26.5655639502171,29.1227928710007,147.833833840581,74.7087485873605,18.1730330641089,3.70230793328962,10.4511242762265,10.2184135618593,9.665059599157,8.87407508342707,9.33987784148455,13.5060194539917,10.4396393539793,13.0112174231969,10.8074139784116,10.544693018181,14.8172706210531,9.88701349519644,13.8328351919804,8.76221602319216,10.6214024533726,12.9100819248994,14.6520056375005,9.77526373657508,11.2492442557223,10.1696938840962,13.7855650930881,13.1373031701846,17.8978549739167,15.4246454902251,12.1545577105731,4.83850806576673,3.14494392181125,3.59779379815766,4.66578279193557,3.85883455603867,6.11102044275408,4.89083433666378,4.21551589615092,5.21666685057355,5.75072826109418,6.69853705803306,8.11297950097858,4.54641980304801,4.4849353380478,4.82443521363367,78.520105820807,8.33762211790133,14.3409179268983,9.33597971763535,9.15291968325158,11.5579317634853,24.5184950112594,17.5620283072019,30.8964882448134,38.0919266195893,33.8044109553873,53.5833039120463,44.0346703758034,55.689887553882,9.04747703635634,2.71952841909355,10.8188140064188,15.7283945393698,247.569009761175,173.94214290283,7.54100748732707,16.4106102682842,12.9358369960665,9.37052986311932,26.0662311256687,14.0991590792006,13.590719119026,10.190755108398,11.7395103485719,16.9508397588561,16.602086673754,168.693691121449,28.9557773824868,14.2452482933804,13.845391545054,26.0652794296606,14.6019652173959,7.52619972080442,7.25576536715402,12.6365403436452,13.2885851796348,14.4494519533646,14.2135561242522,10.1789444253702,12.4774082434652,12.6414703174326,12.6502330289999,8.25084345985495,102.131881726136,17.6459872150684,22.2496936106338,18.8616590827801,32.2759225228938,32.1063871683727,34.8843923676496,53.8902959932841,11.2642419870581,13.9809166770121,23.5965385918809,14.5099902588502,11.6254387221052,9.22787751400785,7.75920236020387,6.56563598980245,11.659233465194,248.284479392072,16.4036045565939,14.4470807574256,13.8895895527284,9.41842285023455,7.24479406921433,8.00723606222829,48.9537878382303,50.5224742888405,42.2891919841537,15.2747298882418,9.33191181064349,12.8091264289915,11.9885928312199,8.990796728622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| |||
|short_description=p1@Peg13 | |||
}} |
Revision as of 10:19, 5 August 2015
Short description: | p1@Peg13 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Peg13_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 310bp_to_NR_002864, uc007wbo.1_5end |
EntrezGene: | 353342 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.33e-10 | 23 |
neuroblast (sensu Vertebrata) | 2.33e-10 | 23 |
neuron | 4.21e-08 | 33 |
neuronal stem cell | 4.21e-08 | 33 |
neuroblast | 4.21e-08 | 33 |
electrically signaling cell | 4.21e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 9.68e-21 | 54 |
neurectoderm | 1.10e-20 | 64 |
neural plate | 1.10e-20 | 64 |
presumptive neural plate | 1.10e-20 | 64 |
neural tube | 1.61e-19 | 52 |
neural rod | 1.61e-19 | 52 |
future spinal cord | 1.61e-19 | 52 |
neural keel | 1.61e-19 | 52 |
structure with developmental contribution from neural crest | 7.88e-19 | 92 |
central nervous system | 3.86e-18 | 73 |
ecto-epithelium | 4.18e-18 | 73 |
ectoderm-derived structure | 1.74e-17 | 95 |
ectoderm | 1.74e-17 | 95 |
presumptive ectoderm | 1.74e-17 | 95 |
brain | 2.15e-17 | 47 |
future brain | 2.15e-17 | 47 |
nervous system | 2.61e-17 | 75 |
pre-chordal neural plate | 2.79e-17 | 49 |
regional part of brain | 9.67e-17 | 46 |
anterior neural tube | 1.22e-15 | 40 |
regional part of forebrain | 6.05e-15 | 39 |
forebrain | 6.05e-15 | 39 |
future forebrain | 6.05e-15 | 39 |
gray matter | 8.37e-14 | 34 |
brain grey matter | 6.82e-12 | 29 |
regional part of telencephalon | 6.82e-12 | 29 |
telencephalon | 6.82e-12 | 29 |
anatomical conduit | 6.58e-08 | 122 |
cerebral cortex | 1.05e-07 | 21 |
cerebral hemisphere | 1.05e-07 | 21 |
pallium | 1.05e-07 | 21 |
occipital lobe | 5.17e-07 | 10 |
visual cortex | 5.17e-07 | 10 |
neocortex | 5.17e-07 | 10 |