FFCP PHASE1:Mm9::chr6:35202670..35202681,+: Difference between revisions
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{{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=1947|UniProt=|association_with_transcript=16bp_to_ENSMUST00000152147_5end|description=CAGE_peak_1_at_ENSMUST00000152147_5end|id=chr6:35202670..35202681,+|ontology_enrichment_celltype=CL:0000221!2.06e-20!44;CL:0000133!2.06e-20!44;CL:0002319!7.49e-20!43;CL:0000055!2.29e-17!50;CL:0000540!9.34e-14!33;CL:0000047!9.34e-14!33;CL:0000031!9.34e-14!33;CL:0000404!9.34e-14!33;CL:0000393!4.74e-12!39;CL:0000211!4.74e-12!39;CL:0000117!2.05e-11!23;CL:0000337!2.05e-11!23;CL:0002321!4.50e-08!70;CL:0000220!4.50e-08!70;CL:0000333!3.44e-07!10;CL:0000095!3.44e-07!10;CL:0000243!3.44e-07!10;CL:0000123!3.44e-07!10;CL:0000125!3.44e-07!10;CL:0000030!3.44e-07!10;CL:0000339!3.44e-07!10|ontology_enrichment_celltype_v019_2=CL:0000221,2.05e-20,44;CL:0000133,2.05e-20,44;CL:0002319,7.49e-20,43;CL:0000540,9.34e-14,33;CL:0000047,9.34e-14,33;CL:0000031,9.34e-14,33;CL:0000404,9.34e-14,33;CL:0000393,4.74e-12,39;CL:0000211,4.74e-12,39;CL:0000117,2.05e-11,23;CL:0000337,2.05e-11,23;CL:0002321,4.49e-08,70;CL:0000333,3.44e-07,10;CL:0000095,3.44e-07,10;CL:0000243,3.44e-07,10;CL:0000123,3.44e-07,10;CL:0000125,3.44e-07,10;CL:0000030,3.44e-07,10;CL:0000339,3.44e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!9.32e-17!75;UBERON:0001016!9.32e-17!75;UBERON:0001017!7.32e-16!73;UBERON:0005743!7.32e-16!73;UBERON:0004121!2.52e-13!102;UBERON:0000924!2.52e-13!102;UBERON:0006601!2.52e-13!102;UBERON:0002346!1.32e-10!71;UBERON:0003075!1.32e-10!71;UBERON:0007284!1.32e-10!71;UBERON:0001049!2.08e-09!52;UBERON:0005068!2.08e-09!52;UBERON:0006241!2.08e-09!52;UBERON:0007135!2.08e-09!52;UBERON:0002020!8.20e-08!34;UBERON:0002780!4.41e-07!39;UBERON:0001890!4.41e-07!39;UBERON:0006240!4.41e-07!39;UBERON:0000955!6.31e-07!50;UBERON:0006238!6.31e-07!50;UBERON:0000033!6.69e-07!63;UBERON:0003056!9.43e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.32e-17,75;UBERON:0001017,7.32e-16,73;UBERON:0010314,1.46e-14,92;UBERON:0004121,1.18e-12,95;UBERON:0000924,1.18e-12,95;UBERON:0006601,1.18e-12,95;UBERON:0002346,4.21e-10,64;UBERON:0003075,4.21e-10,64;UBERON:0007284,4.21e-10,64;UBERON:0001049,2.08e-09,52;UBERON:0005068,2.08e-09,52;UBERON:0006241,2.08e-09,52;UBERON:0007135,2.08e-09,52;UBERON:0000073,5.72e-09,54;UBERON:0002020,8.20e-08,34;UBERON:0010371,9.66e-08,73;UBERON:0000955,3.77e-07,47;UBERON:0006238,3.77e-07,47;UBERON:0002780,4.41e-07,39;UBERON:0001890,4.41e-07,39;UBERON:0006240,4.41e-07,39;UBERON:0002616,6.33e-07,46;UBERON:0003056,9.43e-07,49|phase1_expression=7.36684696682052,1.39590163055744,0.909998478779072,2.72217790176147,1.00179145989269,1.17515490338323,1.86890112476421,3.48632973292256,1.54867594366833,1.63845168425395,3.76679530096111,3.35043067780413,4.45121897821135,2.53519167015092,2.6648780945253,1.41732687172878,2.79824751251259,2.83915948822414,3.42786084014347,2.54633791078818,3.14660173558958,4.26951090163807,5.22399578277871,3.19984845586813,5.50582274561208,2.8711598205751,4.73838195774982,2.37018355954478,1.14014051673824,1.76421090831952,3.76941868114018,1.90509202037889,2.46025915033828,0,1.1554064790051,1.16364251750945,1.02084678131185,7.11503772252743,4.6880120671428,5.23523743973798,7.05877785637217,9.56263678941824,7.2826552954673,2.14024590558481,3.4468156614635,4.9557623083654,21.9069576417451,12.6454590700659,17.5748946187577,12.8323733389027,10.9189408867783,8.62515386189829,2.68452169692378,2.90144856804538,3.02484419228218,5.14518872071894,3.43840127926508,6.18806510732931,12.7459370341547,11.1088105647127,18.3811107016792,15.5868484751801,13.3394219416671,10.3488467487361,12.8552627133707,9.2362414942993,13.1824048628098,19.5951335713993,8.70992743391212,12.2855403881839,14.9330722559481,15.996455126613,9.93908434282261,12.1265891222804,7.95517409451362,21.1420320920305,3.30347642998166,4.46905683298157,5.06901559745603,12.5291973343684,12.6252948171325,10.939180781692,8.09630697104005,8.4414391504752,6.57032465440283,10.9012576625257,10.8202477407318,13.9799584368975,9.84440513331393,6.95258352982427,4.05810284182349,3.44169550792555,5.439770669662,3.77792234146472,1.94932925234301,3.13618820968135,3.23022166303029,3.57903677413921,7.53379413348319,9.89350808628953,9.29566570526091,7.69958864485907,5.09610479413291,0,3.89683873820185,3.54703811665138,1.51657333504435,2.2836775943812,2.07150306917737,3.11728492036132,7.45986905094384,4.56698217468212,8.53277339847416,4.97384713823654,4.70354828542819,4.52399728786832,5.93267922562497,1.3013942122792,3.5384422077995,5.66183974815932,4.19598885074748,2.90925151881133,0,2.92780797011547,3.77004072264219,2.55457055208591,3.71426885968353,5.99902730993408,3.43089613097275,2.99581278809645,1.83000241127451,7.28795242254614,3.82413504423008,4.09144731728529,2.49345653471472,4.38051410282946,4.48093200941392,3.4833951770826,3.79084137650512,2.31486041475121,6.63614259109789,10.1156925950728,6.12211241338187,5.57607825992146,3.81004395247436,4.35586648968489,5.71580519814346,2.06962696591213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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=1947 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=16bp_to_ENSMUST00000152147_5end | |||
|cluster_id=chr6:35202670..35202681,+ | |||
|description=CAGE_peak_1_at_ENSMUST00000152147_5end | |||
|id=chr6:35202670..35202681,+ | |||
|ontology_enrichment_celltype=CL:0000221!2.06e-20!44;CL:0000133!2.06e-20!44;CL:0002319!7.49e-20!43;CL:0000055!2.29e-17!50;CL:0000540!9.34e-14!33;CL:0000047!9.34e-14!33;CL:0000031!9.34e-14!33;CL:0000404!9.34e-14!33;CL:0000393!4.74e-12!39;CL:0000211!4.74e-12!39;CL:0000117!2.05e-11!23;CL:0000337!2.05e-11!23;CL:0002321!4.50e-08!70;CL:0000220!4.50e-08!70;CL:0000333!3.44e-07!10;CL:0000095!3.44e-07!10;CL:0000243!3.44e-07!10;CL:0000123!3.44e-07!10;CL:0000125!3.44e-07!10;CL:0000030!3.44e-07!10;CL:0000339!3.44e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.05e-20,44;CL:0000133,2.05e-20,44;CL:0002319,7.49e-20,43;CL:0000540,9.34e-14,33;CL:0000047,9.34e-14,33;CL:0000031,9.34e-14,33;CL:0000404,9.34e-14,33;CL:0000393,4.74e-12,39;CL:0000211,4.74e-12,39;CL:0000117,2.05e-11,23;CL:0000337,2.05e-11,23;CL:0002321,4.49e-08,70;CL:0000333,3.44e-07,10;CL:0000095,3.44e-07,10;CL:0000243,3.44e-07,10;CL:0000123,3.44e-07,10;CL:0000125,3.44e-07,10;CL:0000030,3.44e-07,10;CL:0000339,3.44e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.32e-17!75;UBERON:0001016!9.32e-17!75;UBERON:0001017!7.32e-16!73;UBERON:0005743!7.32e-16!73;UBERON:0004121!2.52e-13!102;UBERON:0000924!2.52e-13!102;UBERON:0006601!2.52e-13!102;UBERON:0002346!1.32e-10!71;UBERON:0003075!1.32e-10!71;UBERON:0007284!1.32e-10!71;UBERON:0001049!2.08e-09!52;UBERON:0005068!2.08e-09!52;UBERON:0006241!2.08e-09!52;UBERON:0007135!2.08e-09!52;UBERON:0002020!8.20e-08!34;UBERON:0002780!4.41e-07!39;UBERON:0001890!4.41e-07!39;UBERON:0006240!4.41e-07!39;UBERON:0000955!6.31e-07!50;UBERON:0006238!6.31e-07!50;UBERON:0000033!6.69e-07!63;UBERON:0003056!9.43e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.32e-17,75;UBERON:0001017,7.32e-16,73;UBERON:0010314,1.46e-14,92;UBERON:0004121,1.18e-12,95;UBERON:0000924,1.18e-12,95;UBERON:0006601,1.18e-12,95;UBERON:0002346,4.21e-10,64;UBERON:0003075,4.21e-10,64;UBERON:0007284,4.21e-10,64;UBERON:0001049,2.08e-09,52;UBERON:0005068,2.08e-09,52;UBERON:0006241,2.08e-09,52;UBERON:0007135,2.08e-09,52;UBERON:0000073,5.72e-09,54;UBERON:0002020,8.20e-08,34;UBERON:0010371,9.66e-08,73;UBERON:0000955,3.77e-07,47;UBERON:0006238,3.77e-07,47;UBERON:0002780,4.41e-07,39;UBERON:0001890,4.41e-07,39;UBERON:0006240,4.41e-07,39;UBERON:0002616,6.33e-07,46;UBERON:0003056,9.43e-07,49 | |||
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| |||
|short_description=p1@ENSMUST00000152147 | |||
}} |
Latest revision as of 15:06, 5 August 2015
Short description: | p1@ENSMUST00000152147 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENSMUST00000152147_5end |
Coexpression cluster: | MCL_coexpression_mm9:1947 |
Association with transcript: | 16bp_to_ENSMUST00000152147_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.05e-20 | 44 |
neurectodermal cell | 2.05e-20 | 44 |
neural cell | 7.49e-20 | 43 |
neuron | 9.34e-14 | 33 |
neuronal stem cell | 9.34e-14 | 33 |
neuroblast | 9.34e-14 | 33 |
electrically signaling cell | 9.34e-14 | 33 |
electrically responsive cell | 4.74e-12 | 39 |
electrically active cell | 4.74e-12 | 39 |
CNS neuron (sensu Vertebrata) | 2.05e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.05e-11 | 23 |
embryonic cell | 4.49e-08 | 70 |
migratory neural crest cell | 3.44e-07 | 10 |
neuron associated cell | 3.44e-07 | 10 |
glial cell (sensu Vertebrata) | 3.44e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 3.44e-07 | 10 |
glial cell | 3.44e-07 | 10 |
glioblast | 3.44e-07 | 10 |
glioblast (sensu Vertebrata) | 3.44e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 9.32e-17 | 75 |
central nervous system | 7.32e-16 | 73 |
structure with developmental contribution from neural crest | 1.46e-14 | 92 |
ectoderm-derived structure | 1.18e-12 | 95 |
ectoderm | 1.18e-12 | 95 |
presumptive ectoderm | 1.18e-12 | 95 |
neurectoderm | 4.21e-10 | 64 |
neural plate | 4.21e-10 | 64 |
presumptive neural plate | 4.21e-10 | 64 |
neural tube | 2.08e-09 | 52 |
neural rod | 2.08e-09 | 52 |
future spinal cord | 2.08e-09 | 52 |
neural keel | 2.08e-09 | 52 |
regional part of nervous system | 5.72e-09 | 54 |
gray matter | 8.20e-08 | 34 |
ecto-epithelium | 9.66e-08 | 73 |
brain | 3.77e-07 | 47 |
future brain | 3.77e-07 | 47 |
regional part of forebrain | 4.41e-07 | 39 |
forebrain | 4.41e-07 | 39 |
future forebrain | 4.41e-07 | 39 |
regional part of brain | 6.33e-07 | 46 |
pre-chordal neural plate | 9.43e-07 | 49 |