FFCP PHASE1:Mm9::chr13:115892117..115892192,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=109700,105083|HGNC=|MCL_coexpression_id=2055|UniProt=Q3URV2,F8VQN5,Q3V3R4,Q8BPT3|association_with_transcript=0bp_to_ENSMUST00000036276,ENSMUST00000061673,NM_001033228,uc007rxx.1,uc007rxy.1,uc007rxz.1,uc007rya.1,uc007ryd.2_5end|description=CAGE_peak_1_at_Itga1_5end,CAGE_peak_2_at_Pelo_5end|id=chr13:115892117..115892192,-|ontology_enrichment_celltype=CL:0000107!4.64e-07!9|ontology_enrichment_celltype_v019_2=CL:0000107,4.52e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004872!2.15e-13!33;UBERON:0004535!6.91e-11!23;UBERON:0001009!6.91e-11!23;UBERON:0007100!2.44e-09!18;UBERON:0000948!2.44e-09!18;UBERON:0005498!2.44e-09!18;UBERON:0004140!2.44e-09!18;UBERON:0009881!2.44e-09!18;UBERON:0004141!2.44e-09!18;UBERON:0003084!2.44e-09!18;UBERON:0007005!2.44e-09!18;UBERON:0004139!2.44e-09!18;UBERON:0004291!2.44e-09!18;UBERON:0003103!9.26e-08!43;UBERON:0005157!1.03e-07!27;UBERON:0002100!1.13e-07!98;UBERON:0000468!1.70e-07!333;UBERON:0002048!1.85e-07!14;UBERON:0000117!1.85e-07!14;UBERON:0000171!1.85e-07!14;UBERON:0000170!1.85e-07!14;UBERON:0005597!1.85e-07!14;UBERON:0000118!1.85e-07!14;UBERON:0000479!2.59e-07!349;UBERON:0005177!2.60e-07!85;UBERON:0000926!3.29e-07!193;UBERON:0004120!3.29e-07!193;UBERON:0006603!3.29e-07!193;UBERON:0002410!4.64e-07!9;UBERON:0005153!8.05e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0004872,2.03e-13,33;UBERON:0004535,6.60e-11,23;UBERON:0001009,6.60e-11,23;UBERON:0007100,2.35e-09,18;UBERON:0000948,2.35e-09,18;UBERON:0005498,2.35e-09,18;UBERON:0004140,2.35e-09,18;UBERON:0009881,2.35e-09,18;UBERON:0004141,2.35e-09,18;UBERON:0003084,2.35e-09,18;UBERON:0007005,2.35e-09,18;UBERON:0004139,2.35e-09,18;UBERON:0004291,2.35e-09,18;UBERON:0002100,3.56e-09,90;UBERON:0005157,1.02e-08,20;UBERON:0005177,1.53e-08,79;UBERON:0003103,6.47e-08,43;UBERON:0000479,1.61e-07,349;UBERON:0002048,1.80e-07,14;UBERON:0000117,1.80e-07,14;UBERON:0000171,1.80e-07,14;UBERON:0000170,1.80e-07,14;UBERON:0005597,1.80e-07,14;UBERON:0000118,1.80e-07,14;UBERON:0002410,4.52e-07,9;UBERON:0005153,7.85e-07,17|phase1_expression=6.40595388419176,1.74487703819681,0.909998478779072,0.30246421130683,0.500895729946347,3.18970616632591,1.63528848416868,0.129123323441576,0,0,0,0,0,0,2.33176833270964,2.02475267389826,1.39912375625629,0.946386496074713,0.685572168028694,0.84877930359606,10.3752813984305,0.695036658406197,0,2.87986361028132,2.52350209173887,2.29692785646008,0,1.72376986148711,3.23039813075836,4.78857246543868,2.66076612786366,0,1.84519436275371,0,2.02196133825892,0.831173226792462,1.83752420636132,2.51118978442145,6.2506827561904,6.28228492768558,0.588231488031014,0.683045484958446,0,13.4709595233868,9.7321853970734,8.07605709511399,3.12956537739216,6.1047043786525,6.59058548203415,11.8602238435313,3.77963338388479,0,0,0,0,7.97504251711436,15.1862723167541,9.7977697532714,0.809265843438391,2.11596391708813,2.53532561402472,3.04960078862219,3.55717918444456,0,0,1.4209602298922,3.29560121570245,3.84218305321555,2.59224030771194,1.35005938331691,1.47227472945967,2.57085885963423,2.87129103237098,1.5923803897944,1.62937300731002,0.919218786610021,1.10115880999389,1.91531007127782,1.99688493233117,1.18697658957174,1.18933936683133,2.08365348222704,1.95428099300967,1.68828783009504,3.36156145108982,3.83017161115768,5.41012387036591,3.35519002485541,0.757261933331841,4.60986516651392,46.3783181922684,20.6501730475533,0.679971333707751,0,5.84798775702902,0.896053774194671,6.46044332606059,10.0553890321054,4.1565760736459,6.00677276667578,1.97180787687353,10.2661181931454,5.09610479413291,0,0,0,0,5.59501010623394,11.6522047641227,10.984718290797,3.46970653532272,4.87144765299426,2.53677046981664,6.63179618431539,7.99603208522793,11.9383261763192,8.40462890296871,20.6777080395474,7.96149496754887,9.38247729694973,12.1462835153216,9.21262980956922,14.9113408974498,5.27005434620785,2.72280718857492,10.2182822083437,3.83408398418945,0.599902730993408,6.4805815807263,2.39665023047716,2.28750301409313,2.01046963380583,3.30266208365325,4.60287823194595,3.32460871295296,4.2182728397617,9.87841829348068,12.8139179728396,3.53811861807145,2.94618598241064,2.47228841629137,0.919608417733892,3.06105620669094,3.16480117455002,3.12967896096108,2.69038812598185,3.74806898238915,6.72628763921441,1.29340795759705,3.02569728268511,4.57472922826267,6.1374805079721,8.34141747676794,8.00979983000983,12.7584924572925,4.37875387000685,6.31991868581911,7.97778512055617,11.3665399758237,19.2626968458017,21.1073453982987,22.6878197440879,19.4130683179872,22.2343581874566,21.4431286913456,22.78832658554,28.16870714696,20.9009962837233,18.4307031903098,30.6993157827908,30.6440100083335,26.1697977491345,28.5415149878366,30.7332698961251,4.20579897128254,3.39585220851639,12.8863325363681,3.43785736662608,4.90562976231038,4.64473343720877,6.70110798874885,11.6976444281539,6.0042071838115,6.84812254005213,5.21981967698963,4.94096864172033,8.04272668160862,11.3405189063456,9.74820435595601,8.98819408654222,5.40345124686736,7.76650965692032,2.27601481143698,7.88314737007129,18.0332377076929,16.2921062276251,21.7226785627741,16.1312385747733,32.5035800818682,24.6508947125936,29.3587621063371,24.8028299482819,5.33614728756868,2.50267658574141,1.17935397067922,2.24862112384854,2.23146133527353,2.65294875727659,4.07401362850272,8.0554918486227,5.0261920300261,6.04035109013779,11.5014565221884,13.7692150637346,9.67316786655138,10.6083128737787,7.17589654087649,7.23665282045051,35.2878593218215,5.49525094134406,9.77789858652155,10.0149600607361,12.2038929110021,15.7455881995307,26.6608877792335,21.8549685600735,37.3595291531673,40.0851088264283,47.1986115226162,47.8480878969955,50.0786447411097,51.6397139135996,0,0.54390568381871,8.85175691434265,7.17435540392304,3.85321415970701,4.92289083687253,0.163934945376675,18.1779067587149,43.5401342794434,44.9004555941134,60.5339747629165,35.6063508949303,38.7669692903366,29.4399592020386,27.9319384155677,30.3946092227764,43.4816555741176,4.4984984299053,7.80670468645477,6.94455854302295,9.12166972380026,11.71287873105,17.2568679841952,2.6705869977048,3.02323556964751,8.11001842950362,7.08724542913855,13.8345816574767,11.1124166062335,9.81541069589265,9.62542921638748,19.5942789920206,24.2462799722497,17.5330423521918,4.08527526904546,4.50152735078276,2.45781499187234,5.78709994585299,4.43350584105684,5.17269571046005,6.74650984468696,3.34911444026059,36.1394430418114,11.4389318266463,3.74898276693435,4.9465875882444,7.91175690809937,13.148217634338,14.0859365923701,13.29541287935,6.70405924248657,2.96680483216816,7.00570611271196,17.7492706448371,26.8532064686082,10.7370020492674,7.10809984149331,9.83746144788047,0.339956859987711,1.11961161858926,0.414599921413271,2.86401185404534,4.58687190692646,9.35269548783504,7.66837919834789,8.99079672862215,8.7345025498471,11.1937407499401,12.067404535899,10.2084817373772,6.09190374471426,10.5627683224777,0.56369293868419,3.13984746692355,2.81279433777066,6.41688921535357,5.42471258606471,3.8859908862879,5.63314745499619,6.2498104725096,3.35549902162275,1.44950472495604,4.32045009386798,0.948033361884535,2.43270258348197,2.77319584345034,1.42912905275575,3.04345382634718,1.98681354781265,1.32214994471966,1.62458479892035,2.1202954489111,1.5241361331,2.01652370273681,1.94915761479505,1.44317762460494,2.22066114144981,10.4295976462997,0.665957860122194,0.986852422704233,0.503653849092235,11.0118068598349,31.5306558757986,10.6227942075014,4.71610433973945,13.5424468089548,2.82375921308533,1.38097570952153,4.01026859407578,4.29632955859219,1.37016503954128,1.5107877947794,4.05013500139084,1.35096360967266,2.26571204492102,0,0.830298780673413,1.99512436700516,4.78054096111576,6.80698807791223,1.04806581313991,2.5738091183002,8.66762238426299,8.44743734679466,6.09746498224449,6.57012750585873,6.08350319736575,8.86543804514558,7.95952813494,8.32326981263301,7.46661096422972,11.9073422820768,9.618399053423,6.75182271622968,9.06588981767275,6.32955356577908,7.88599280486455,7.98641127717019,7.62995807831427,8.28474574804273,9.31682866111773,10.2383675548929,8.23175877927476,8.94437018888666,8.41985505844343,5.61142271657738,6.28765596058123,5.81176446015824,4.50154147486658,6.50734732981057,7.33045121728337,3.99696924700713,9.59119594626174,7.52048689169044,11.8598765882683,11.6913452133343,11.5933917810211|short_description=p1@Itga1,p2@Pelo}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:109700,entrezgene:105083 | |||
|HGNC= | |||
|MCL_coexpression_id=2055 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3URV2,uniprot:F8VQN5,uniprot:Q3V3R4,uniprot:Q8BPT3 | |||
|association_with_transcript=0bp_to_ENSMUST00000036276,ENSMUST00000061673,NM_001033228,uc007rxx.1,uc007rxy.1,uc007rxz.1,uc007rya.1,uc007ryd.2_5end | |||
|cluster_id=chr13:115892117..115892192,- | |||
|description=CAGE_peak_1_at_Itga1_5end,CAGE_peak_2_at_Pelo_5end | |||
|id=chr13:115892117..115892192,- | |||
|ontology_enrichment_celltype=CL:0000107!4.64e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000107,4.52e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!2.15e-13!33;UBERON:0004535!6.91e-11!23;UBERON:0001009!6.91e-11!23;UBERON:0007100!2.44e-09!18;UBERON:0000948!2.44e-09!18;UBERON:0005498!2.44e-09!18;UBERON:0004140!2.44e-09!18;UBERON:0009881!2.44e-09!18;UBERON:0004141!2.44e-09!18;UBERON:0003084!2.44e-09!18;UBERON:0007005!2.44e-09!18;UBERON:0004139!2.44e-09!18;UBERON:0004291!2.44e-09!18;UBERON:0003103!9.26e-08!43;UBERON:0005157!1.03e-07!27;UBERON:0002100!1.13e-07!98;UBERON:0000468!1.70e-07!333;UBERON:0002048!1.85e-07!14;UBERON:0000117!1.85e-07!14;UBERON:0000171!1.85e-07!14;UBERON:0000170!1.85e-07!14;UBERON:0005597!1.85e-07!14;UBERON:0000118!1.85e-07!14;UBERON:0000479!2.59e-07!349;UBERON:0005177!2.60e-07!85;UBERON:0000926!3.29e-07!193;UBERON:0004120!3.29e-07!193;UBERON:0006603!3.29e-07!193;UBERON:0002410!4.64e-07!9;UBERON:0005153!8.05e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,2.03e-13,33;UBERON:0004535,6.60e-11,23;UBERON:0001009,6.60e-11,23;UBERON:0007100,2.35e-09,18;UBERON:0000948,2.35e-09,18;UBERON:0005498,2.35e-09,18;UBERON:0004140,2.35e-09,18;UBERON:0009881,2.35e-09,18;UBERON:0004141,2.35e-09,18;UBERON:0003084,2.35e-09,18;UBERON:0007005,2.35e-09,18;UBERON:0004139,2.35e-09,18;UBERON:0004291,2.35e-09,18;UBERON:0002100,3.56e-09,90;UBERON:0005157,1.02e-08,20;UBERON:0005177,1.53e-08,79;UBERON:0003103,6.47e-08,43;UBERON:0000479,1.61e-07,349;UBERON:0002048,1.80e-07,14;UBERON:0000117,1.80e-07,14;UBERON:0000171,1.80e-07,14;UBERON:0000170,1.80e-07,14;UBERON:0005597,1.80e-07,14;UBERON:0000118,1.80e-07,14;UBERON:0002410,4.52e-07,9;UBERON:0005153,7.85e-07,17 | |||
|phase1_expression=6.40595388419176,1.74487703819681,0.909998478779072,0.30246421130683,0.500895729946347,3.18970616632591,1.63528848416868,0.129123323441576,0,0,0,0,0,0,2.33176833270964,2.02475267389826,1.39912375625629,0.946386496074713,0.685572168028694,0.84877930359606,10.3752813984305,0.695036658406197,0,2.87986361028132,2.52350209173887,2.29692785646008,0,1.72376986148711,3.23039813075836,4.78857246543868,2.66076612786366,0,1.84519436275371,0,2.02196133825892,0.831173226792462,1.83752420636132,2.51118978442145,6.2506827561904,6.28228492768558,0.588231488031014,0.683045484958446,0,13.4709595233868,9.7321853970734,8.07605709511399,3.12956537739216,6.1047043786525,6.59058548203415,11.8602238435313,3.77963338388479,0,0,0,0,7.97504251711436,15.1862723167541,9.7977697532714,0.809265843438391,2.11596391708813,2.53532561402472,3.04960078862219,3.55717918444456,0,0,1.4209602298922,3.29560121570245,3.84218305321555,2.59224030771194,1.35005938331691,1.47227472945967,2.57085885963423,2.87129103237098,1.5923803897944,1.62937300731002,0.919218786610021,1.10115880999389,1.91531007127782,1.99688493233117,1.18697658957174,1.18933936683133,2.08365348222704,1.95428099300967,1.68828783009504,3.36156145108982,3.83017161115768,5.41012387036591,3.35519002485541,0.757261933331841,4.60986516651392,46.3783181922684,20.6501730475533,0.679971333707751,0,5.84798775702902,0.896053774194671,6.46044332606059,10.0553890321054,4.1565760736459,6.00677276667578,1.97180787687353,10.2661181931454,5.09610479413291,0,0,0,0,5.59501010623394,11.6522047641227,10.984718290797,3.46970653532272,4.87144765299426,2.53677046981664,6.63179618431539,7.99603208522793,11.9383261763192,8.40462890296871,20.6777080395474,7.96149496754887,9.38247729694973,12.1462835153216,9.21262980956922,14.9113408974498,5.27005434620785,2.72280718857492,10.2182822083437,3.83408398418945,0.599902730993408,6.4805815807263,2.39665023047716,2.28750301409313,2.01046963380583,3.30266208365325,4.60287823194595,3.32460871295296,4.2182728397617,9.87841829348068,12.8139179728396,3.53811861807145,2.94618598241064,2.47228841629137,0.919608417733892,3.06105620669094,3.16480117455002,3.12967896096108,2.69038812598185,3.74806898238915,6.72628763921441,1.29340795759705,3.02569728268511,4.57472922826267,6.1374805079721,8.34141747676794,8.00979983000983,12.7584924572925,4.37875387000685,6.31991868581911,7.97778512055617,11.3665399758237,19.2626968458017,21.1073453982987,22.6878197440879,19.4130683179872,22.2343581874566,21.4431286913456,22.78832658554,28.16870714696,20.9009962837233,18.4307031903098,30.6993157827908,30.6440100083335,26.1697977491345,28.5415149878366,30.7332698961251,4.20579897128254,3.39585220851639,12.8863325363681,3.43785736662608,4.90562976231038,4.64473343720877,6.70110798874885,11.6976444281539,6.0042071838115,6.84812254005213,5.21981967698963,4.94096864172033,8.04272668160862,11.3405189063456,9.74820435595601,8.98819408654222,5.40345124686736,7.76650965692032,2.27601481143698,7.88314737007129,18.0332377076929,16.2921062276251,21.7226785627741,16.1312385747733,32.5035800818682,24.6508947125936,29.3587621063371,24.8028299482819,5.33614728756868,2.50267658574141,1.17935397067922,2.24862112384854,2.23146133527353,2.65294875727659,4.07401362850272,8.0554918486227,5.0261920300261,6.04035109013779,11.5014565221884,13.7692150637346,9.67316786655138,10.6083128737787,7.17589654087649,7.23665282045051,35.2878593218215,5.49525094134406,9.77789858652155,10.0149600607361,12.2038929110021,15.7455881995307,26.6608877792335,21.8549685600735,37.3595291531673,40.0851088264283,47.1986115226162,47.8480878969955,50.0786447411097,51.6397139135996,0,0.54390568381871,8.85175691434265,7.17435540392304,3.85321415970701,4.92289083687253,0.163934945376675,18.1779067587149,43.5401342794434,44.9004555941134,60.5339747629165,35.6063508949303,38.7669692903366,29.4399592020386,27.9319384155677,30.3946092227764,43.4816555741176,4.4984984299053,7.80670468645477,6.94455854302295,9.12166972380026,11.71287873105,17.2568679841952,2.6705869977048,3.02323556964751,8.11001842950362,7.08724542913855,13.8345816574767,11.1124166062335,9.81541069589265,9.62542921638748,19.5942789920206,24.2462799722497,17.5330423521918,4.08527526904546,4.50152735078276,2.45781499187234,5.78709994585299,4.43350584105684,5.17269571046005,6.74650984468696,3.34911444026059,36.1394430418114,11.4389318266463,3.74898276693435,4.9465875882444,7.91175690809937,13.148217634338,14.0859365923701,13.29541287935,6.70405924248657,2.96680483216816,7.00570611271196,17.7492706448371,26.8532064686082,10.7370020492674,7.10809984149331,9.83746144788047,0.339956859987711,1.11961161858926,0.414599921413271,2.86401185404534,4.58687190692646,9.35269548783504,7.66837919834789,8.99079672862215,8.7345025498471,11.1937407499401,12.067404535899,10.2084817373772,6.09190374471426,10.5627683224777,0.56369293868419,3.13984746692355,2.81279433777066,6.41688921535357,5.42471258606471,3.8859908862879,5.63314745499619,6.2498104725096,3.35549902162275,1.44950472495604,4.32045009386798,0.948033361884535,2.43270258348197,2.77319584345034,1.42912905275575,3.04345382634718,1.98681354781265,1.32214994471966,1.62458479892035,2.1202954489111,1.5241361331,2.01652370273681,1.94915761479505,1.44317762460494,2.22066114144981,10.4295976462997,0.665957860122194,0.986852422704233,0.503653849092235,11.0118068598349,31.5306558757986,10.6227942075014,4.71610433973945,13.5424468089548,2.82375921308533,1.38097570952153,4.01026859407578,4.29632955859219,1.37016503954128,1.5107877947794,4.05013500139084,1.35096360967266,2.26571204492102,0,0.830298780673413,1.99512436700516,4.78054096111576,6.80698807791223,1.04806581313991,2.5738091183002,8.66762238426299,8.44743734679466,6.09746498224449,6.57012750585873,6.08350319736575,8.86543804514558,7.95952813494,8.32326981263301,7.46661096422972,11.9073422820768,9.618399053423,6.75182271622968,9.06588981767275,6.32955356577908,7.88599280486455,7.98641127717019,7.62995807831427,8.28474574804273,9.31682866111773,10.2383675548929,8.23175877927476,8.94437018888666,8.41985505844343,5.61142271657738,6.28765596058123,5.81176446015824,4.50154147486658,6.50734732981057,7.33045121728337,3.99696924700713,9.59119594626174,7.52048689169044,11.8598765882683,11.6913452133343,11.5933917810211 | |||
|short_description=p1@Itga1,p2@Pelo | |||
}} |
Revision as of 15:37, 5 August 2015
Short description: | p1@Itga1, p2@Pelo |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Itga1_5end, CAGE_peak_2_at_Pelo_5end |
Coexpression cluster: | MCL_coexpression_mm9:2055 |
Association with transcript: | 0bp_to_ENSMUST00000036276, ENSMUST00000061673, NM_001033228, uc007rxx.1, uc007rxy.1, uc007rxz.1, uc007rya.1, uc007ryd.2_5end |
EntrezGene: | 109700,105083 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
autonomic neuron | 4.52e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
splanchnic layer of lateral plate mesoderm | 2.03e-13 | 33 |
cardiovascular system | 6.60e-11 | 23 |
circulatory system | 6.60e-11 | 23 |
primary circulatory organ | 2.35e-09 | 18 |
heart | 2.35e-09 | 18 |
primitive heart tube | 2.35e-09 | 18 |
primary heart field | 2.35e-09 | 18 |
anterior lateral plate mesoderm | 2.35e-09 | 18 |
heart tube | 2.35e-09 | 18 |
heart primordium | 2.35e-09 | 18 |
cardiac mesoderm | 2.35e-09 | 18 |
cardiogenic plate | 2.35e-09 | 18 |
heart rudiment | 2.35e-09 | 18 |
trunk | 3.56e-09 | 90 |
epithelial fold | 1.02e-08 | 20 |
trunk region element | 1.53e-08 | 79 |
compound organ | 6.47e-08 | 43 |
tissue | 1.61e-07 | 349 |
lung | 1.80e-07 | 14 |
respiratory tube | 1.80e-07 | 14 |
respiration organ | 1.80e-07 | 14 |
pair of lungs | 1.80e-07 | 14 |
lung primordium | 1.80e-07 | 14 |
lung bud | 1.80e-07 | 14 |
autonomic nervous system | 4.52e-07 | 9 |
epithelial bud | 7.85e-07 | 17 |