FFCP PHASE1:Mm9::chr13:46823301..46823374,-: Difference between revisions
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{{FFCP|EntrezGene=218210|HGNC=|MCL_coexpression_id=2072|UniProt=E9Q3G8,Q3V3W1,Q8BRF6,Q80WR0|association_with_transcript=-83bp_to_ENSMUST00000021803,NM_175749,uc007qhj.2_5end|description=CAGE_peak_1_at_Nup153_5end|id=chr13:46823301..46823374,-|ontology_enrichment_celltype=CL:0000542!4.15e-08!13;CL:0000051!4.15e-08!13;CL:0002031!5.22e-08!25;CL:0000838!7.14e-08!12;CL:0000791!2.36e-07!9;CL:0000789!2.36e-07!9;CL:0002420!2.36e-07!9;CL:0002419!2.36e-07!9;CL:0000790!2.36e-07!9;CL:0000084!3.06e-07!11;CL:0000827!3.06e-07!11;CL:0000988!3.89e-07!32;CL:0002032!3.89e-07!32;CL:0000037!3.89e-07!32;CL:0000566!3.89e-07!32;CL:0000837!3.89e-07!32|ontology_enrichment_celltype_v019_2=CL:0000542,4.15e-08,13;CL:0000051,4.15e-08,13;CL:0002031,5.22e-08,25;CL:0000838,7.14e-08,12;CL:0000791,2.36e-07,9;CL:0000789,2.36e-07,9;CL:0002420,2.36e-07,9;CL:0002419,2.36e-07,9;CL:0000790,2.36e-07,9;CL:0000084,3.06e-07,11;CL:0000827,3.06e-07,11;CL:0000988,3.89e-07,32;CL:0002032,3.89e-07,32;CL:0000037,3.89e-07,32;CL:0000837,3.89e-07,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!2.50e-12!29;UBERON:0002370!1.31e-10!23;UBERON:0000974!1.31e-10!23;UBERON:0004807!1.31e-10!23;UBERON:0005058!1.31e-10!23;UBERON:0003351!1.31e-10!23;UBERON:0009113!1.31e-10!23;UBERON:0003295!1.31e-10!23;UBERON:0009722!1.31e-10!23;UBERON:0005562!1.31e-10!23;UBERON:0007690!1.31e-10!23;UBERON:0006562!3.06e-10!24;UBERON:0001557!3.06e-10!24;UBERON:0001042!3.06e-10!24;UBERON:0008814!3.06e-10!24;UBERON:0009145!3.06e-10!24;UBERON:0003408!6.80e-10!24;UBERON:0000065!9.84e-09!41;UBERON:0001004!2.50e-08!42;UBERON:0000072!1.41e-07!27;UBERON:0002390!3.24e-07!45;UBERON:0003061!3.24e-07!45|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.50e-12,29;UBERON:0005057,2.50e-12,29;UBERON:0000153,3.53e-11,43;UBERON:0002370,1.31e-10,23;UBERON:0000974,1.31e-10,23;UBERON:0004807,1.31e-10,23;UBERON:0005058,1.31e-10,23;UBERON:0003351,1.31e-10,23;UBERON:0009113,1.31e-10,23;UBERON:0003295,1.31e-10,23;UBERON:0009722,1.31e-10,23;UBERON:0005562,1.31e-10,23;UBERON:0007690,1.31e-10,23;UBERON:0006562,3.06e-10,24;UBERON:0001557,3.06e-10,24;UBERON:0001042,3.06e-10,24;UBERON:0008814,3.06e-10,24;UBERON:0009145,3.06e-10,24;UBERON:0007811,5.77e-10,36;UBERON:0003408,6.80e-10,24;UBERON:0000077,1.49e-09,35;UBERON:0000065,9.84e-09,41;UBERON:0001004,2.50e-08,42;UBERON:0000072,1.41e-07,27;UBERON:0001048,1.41e-07,134;UBERON:0002390,3.24e-07,45;UBERON:0003061,3.24e-07,45|phase1_expression=24.3426247599287,12.9120900826564,10.4649825059593,14.8207463540347,11.0197060588196,20.6491504451624,17.9881733258555,48.5503696140327,58.0049535264867,61.0908413700403,43.3181459610528,42.8376493804956,45.5393941617007,46.1579724772306,29.9798785634096,35.4331717932195,33.578970150151,32.3348719492194,34.2786084014347,32.6780031884483,25.598030335472,26.0142292146319,24.0303806007821,8.79958325363737,8.71755268055246,10.9104073181854,12.9228598847722,7.54149314400612,8.55105387553682,11.5933859689568,8.42575940490158,46.3572391625531,35.0586928923205,31.6963362030877,19.0642069035841,17.7871070533587,19.6002582011874,19.6709866446347,18.7520482685712,18.8468547830567,22.9410280332096,26.6387739133794,19.9059244742773,14.3522372492158,19.3629938629273,19.2724089769766,8.60630478782843,7.63088047331563,6.15121311656521,10.304784650937,10.9189408867783,5.75010257459886,45.1335210295311,42.7963663786693,51.7584450679395,12.3484529297255,14.6132054368766,11.3447860301037,28.3243045203437,22.7466121086974,17.1134478946668,8.13226876965917,6.22506357277798,9.44894703145469,4.94433181283487,7.8152812644071,7.49000276296012,8.83702102239575,24.9891965663431,23.4910332697142,25.86997024622,14.8538511889978,14.3564551618549,28.2953746186544,22.715376631322,28.4957823849107,9.91042928994498,16.7270412891596,18.1255709242367,27.9598929988011,24.335713198241,24.4829284161677,10.0505879640497,14.069065250792,15.8910177687883,25.0434297652618,23.3489556510529,27.7735174279698,24.2323818666189,15.870027622425,12.4641730141721,14.6272059086836,10.879541339324,10.7940638327563,10.3964226791627,9.40856462904405,17.4151080963372,16.3613109674935,12.7295142255406,15.1936017039446,21.4081998060554,10.2661181931454,45.8649431471962,42.6640021891999,14.9378818297738,11.9079136773296,11.1215377903252,14.6155366040397,10.616453229534,20.9303416081403,25.8493136881542,18.5723941770406,19.1410862722529,15.976599898578,18.4614270203057,14.702991185572,17.5508427091405,10.9895511259133,27.4229271104461,21.5149910430054,24.5134085491037,24.7286379098963,7.45567044872489,23.1296829639122,23.8769245767339,12.517395705221,31.511377745057,26.3957201637099,25.2869751875399,16.7765516133401,25.1625331550245,26.1361052394758,16.339486098074,11.2514801225345,16.4152555202052,12.3303359931496,30.2462910635439,19.4074874151745,24.5141075680664,13.4682787767343,30.1879427673473,25.5191335921155,25.3887603025542,23.5099515823715,29.3237311342223,28.953700784376,29.5160432363146,21.7310831420773,40.5267826713743,32.715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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:218210 | |||
|HGNC= | |||
|MCL_coexpression_id=2072 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9Q3G8,uniprot:Q3V3W1,uniprot:Q8BRF6,uniprot:Q80WR0 | |||
|association_with_transcript=-83bp_to_ENSMUST00000021803,NM_175749,uc007qhj.2_5end | |||
|cluster_id=chr13:46823301..46823374,- | |||
|description=CAGE_peak_1_at_Nup153_5end | |||
|id=chr13:46823301..46823374,- | |||
|ontology_enrichment_celltype=CL:0000542!4.15e-08!13;CL:0000051!4.15e-08!13;CL:0002031!5.22e-08!25;CL:0000838!7.14e-08!12;CL:0000791!2.36e-07!9;CL:0000789!2.36e-07!9;CL:0002420!2.36e-07!9;CL:0002419!2.36e-07!9;CL:0000790!2.36e-07!9;CL:0000084!3.06e-07!11;CL:0000827!3.06e-07!11;CL:0000988!3.89e-07!32;CL:0002032!3.89e-07!32;CL:0000037!3.89e-07!32;CL:0000566!3.89e-07!32;CL:0000837!3.89e-07!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.15e-08,13;CL:0000051,4.15e-08,13;CL:0002031,5.22e-08,25;CL:0000838,7.14e-08,12;CL:0000791,2.36e-07,9;CL:0000789,2.36e-07,9;CL:0002420,2.36e-07,9;CL:0002419,2.36e-07,9;CL:0000790,2.36e-07,9;CL:0000084,3.06e-07,11;CL:0000827,3.06e-07,11;CL:0000988,3.89e-07,32;CL:0002032,3.89e-07,32;CL:0000037,3.89e-07,32;CL:0000837,3.89e-07,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.50e-12!29;UBERON:0002370!1.31e-10!23;UBERON:0000974!1.31e-10!23;UBERON:0004807!1.31e-10!23;UBERON:0005058!1.31e-10!23;UBERON:0003351!1.31e-10!23;UBERON:0009113!1.31e-10!23;UBERON:0003295!1.31e-10!23;UBERON:0009722!1.31e-10!23;UBERON:0005562!1.31e-10!23;UBERON:0007690!1.31e-10!23;UBERON:0006562!3.06e-10!24;UBERON:0001557!3.06e-10!24;UBERON:0001042!3.06e-10!24;UBERON:0008814!3.06e-10!24;UBERON:0009145!3.06e-10!24;UBERON:0003408!6.80e-10!24;UBERON:0000065!9.84e-09!41;UBERON:0001004!2.50e-08!42;UBERON:0000072!1.41e-07!27;UBERON:0002390!3.24e-07!45;UBERON:0003061!3.24e-07!45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,2.50e-12,29;UBERON:0005057,2.50e-12,29;UBERON:0000153,3.53e-11,43;UBERON:0002370,1.31e-10,23;UBERON:0000974,1.31e-10,23;UBERON:0004807,1.31e-10,23;UBERON:0005058,1.31e-10,23;UBERON:0003351,1.31e-10,23;UBERON:0009113,1.31e-10,23;UBERON:0003295,1.31e-10,23;UBERON:0009722,1.31e-10,23;UBERON:0005562,1.31e-10,23;UBERON:0007690,1.31e-10,23;UBERON:0006562,3.06e-10,24;UBERON:0001557,3.06e-10,24;UBERON:0001042,3.06e-10,24;UBERON:0008814,3.06e-10,24;UBERON:0009145,3.06e-10,24;UBERON:0007811,5.77e-10,36;UBERON:0003408,6.80e-10,24;UBERON:0000077,1.49e-09,35;UBERON:0000065,9.84e-09,41;UBERON:0001004,2.50e-08,42;UBERON:0000072,1.41e-07,27;UBERON:0001048,1.41e-07,134;UBERON:0002390,3.24e-07,45;UBERON:0003061,3.24e-07,45 | |||
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| |||
|short_description=p1@Nup153 | |||
}} |
Revision as of 01:15, 6 August 2015
Short description: | p1@Nup153 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nup153_5end |
Coexpression cluster: | MCL_coexpression_mm9:2072 |
Association with transcript: | -83bp_to_ENSMUST00000021803, NM_175749, uc007qhj.2_5end |
EntrezGene: | 218210 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.15e-08 | 13 |
common lymphoid progenitor | 4.15e-08 | 13 |
hematopoietic lineage restricted progenitor cell | 5.22e-08 | 25 |
lymphoid lineage restricted progenitor cell | 7.14e-08 | 12 |
mature alpha-beta T cell | 2.36e-07 | 9 |
alpha-beta T cell | 2.36e-07 | 9 |
immature T cell | 2.36e-07 | 9 |
mature T cell | 2.36e-07 | 9 |
immature alpha-beta T cell | 2.36e-07 | 9 |
T cell | 3.06e-07 | 11 |
pro-T cell | 3.06e-07 | 11 |
hematopoietic cell | 3.89e-07 | 32 |
hematopoietic oligopotent progenitor cell | 3.89e-07 | 32 |
hematopoietic stem cell | 3.89e-07 | 32 |
hematopoietic multipotent progenitor cell | 3.89e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 2.50e-12 | 29 |
immune organ | 2.50e-12 | 29 |
anterior region of body | 3.53e-11 | 43 |
thymus | 1.31e-10 | 23 |
neck | 1.31e-10 | 23 |
respiratory system epithelium | 1.31e-10 | 23 |
hemolymphoid system gland | 1.31e-10 | 23 |
pharyngeal epithelium | 1.31e-10 | 23 |
thymic region | 1.31e-10 | 23 |
pharyngeal gland | 1.31e-10 | 23 |
entire pharyngeal arch endoderm | 1.31e-10 | 23 |
thymus primordium | 1.31e-10 | 23 |
early pharyngeal endoderm | 1.31e-10 | 23 |
pharynx | 3.06e-10 | 24 |
upper respiratory tract | 3.06e-10 | 24 |
chordate pharynx | 3.06e-10 | 24 |
pharyngeal arch system | 3.06e-10 | 24 |
pharyngeal region of foregut | 3.06e-10 | 24 |
craniocervical region | 5.77e-10 | 36 |
gland of gut | 6.80e-10 | 24 |
mixed endoderm/mesoderm-derived structure | 1.49e-09 | 35 |
respiratory tract | 9.84e-09 | 41 |
respiratory system | 2.50e-08 | 42 |
segment of respiratory tract | 1.41e-07 | 27 |
primordium | 1.41e-07 | 134 |
hematopoietic system | 3.24e-07 | 45 |
blood island | 3.24e-07 | 45 |