FFCP PHASE1:Mm9::chrX:147091935..147091950,-: Difference between revisions
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{{FFCP|EntrezGene=56191|HGNC=|MCL_coexpression_id=13|UniProt=E9Q886,E9Q098,E9Q1E1|association_with_transcript=0bp_to_ENSMUST00000087253,ENSMUST00000151403,ENSMUST00000163450_5end|description=CAGE_peak_1_at_Tro_5end|id=chrX:147091935..147091950,-|ontology_enrichment_celltype=CL:0000117!5.27e-14!23;CL:0000337!5.27e-14!23;CL:0000540!7.83e-13!33;CL:0000047!7.83e-13!33;CL:0000031!7.83e-13!33;CL:0000404!7.83e-13!33;CL:0000393!3.43e-10!39;CL:0000211!3.43e-10!39;CL:0002319!5.55e-09!43;CL:0000221!8.43e-09!44;CL:0000133!8.43e-09!44;CL:0000055!8.44e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,3.35e-14,23;CL:0000337,3.35e-14,23;CL:0000540,5.19e-13,33;CL:0000047,5.19e-13,33;CL:0000031,5.19e-13,33;CL:0000404,5.19e-13,33;CL:0000393,6.10e-10,39;CL:0000211,6.10e-10,39;CL:0002319,4.23e-09,43;CL:0000221,6.47e-09,44;CL:0000133,6.47e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.28e-26!73;UBERON:0005743!1.28e-26!73;UBERON:0002346!5.32e-26!71;UBERON:0003075!5.32e-26!71;UBERON:0007284!5.32e-26!71;UBERON:0000073!1.16e-25!75;UBERON:0001016!1.16e-25!75;UBERON:0001049!1.43e-24!52;UBERON:0005068!1.43e-24!52;UBERON:0006241!1.43e-24!52;UBERON:0007135!1.43e-24!52;UBERON:0000955!3.56e-23!50;UBERON:0006238!3.56e-23!50;UBERON:0000033!5.82e-23!63;UBERON:0004121!8.34e-23!102;UBERON:0000924!8.34e-23!102;UBERON:0006601!8.34e-23!102;UBERON:0002616!1.45e-22!49;UBERON:0003056!4.52e-21!49;UBERON:0003080!2.09e-19!40;UBERON:0002780!1.14e-18!39;UBERON:0001890!1.14e-18!39;UBERON:0006240!1.14e-18!39;UBERON:0002020!1.24e-17!34;UBERON:0002791!1.81e-14!29;UBERON:0003528!1.81e-14!29;UBERON:0001893!1.81e-14!29;UBERON:0000153!6.10e-11!94;UBERON:0000468!3.21e-10!333;UBERON:0007811!8.49e-10!86;UBERON:0000025!1.35e-09!114;UBERON:0000956!1.69e-09!21;UBERON:0001869!1.69e-09!21;UBERON:0000203!1.69e-09!21;UBERON:0004111!2.46e-08!122;UBERON:0002619!7.42e-08!17;UBERON:0000922!1.04e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.12e-27,73;UBERON:0002346,7.12e-27,64;UBERON:0003075,7.12e-27,64;UBERON:0007284,7.12e-27,64;UBERON:0000073,2.26e-26,54;UBERON:0001016,4.80e-26,75;UBERON:0001049,6.14e-25,52;UBERON:0005068,6.14e-25,52;UBERON:0006241,6.14e-25,52;UBERON:0007135,6.14e-25,52;UBERON:0010314,3.85e-24,92;UBERON:0004121,5.06e-22,95;UBERON:0000924,5.06e-22,95;UBERON:0006601,5.06e-22,95;UBERON:0010371,1.02e-21,73;UBERON:0000955,1.92e-21,47;UBERON:0006238,1.92e-21,47;UBERON:0003056,2.21e-21,49;UBERON:0002616,7.76e-21,46;UBERON:0003080,1.09e-19,40;UBERON:0002780,6.11e-19,39;UBERON:0001890,6.11e-19,39;UBERON:0006240,6.11e-19,39;UBERON:0002020,6.87e-18,34;UBERON:0003528,1.13e-14,29;UBERON:0002791,1.13e-14,29;UBERON:0001893,1.13e-14,29;UBERON:0000956,1.27e-09,21;UBERON:0001869,1.27e-09,21;UBERON:0000203,1.27e-09,21;UBERON:0000025,2.57e-09,114;UBERON:0002619,5.89e-08,17;UBERON:0004111,7.20e-08,122;UBERON:0000922,2.39e-07,320|phase1_expression=19.3780104996801,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,22.3663853097314,0.198581902401771,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0.755380907853464,0.811015449756117,1.28482726513177,3.12956537739216,3.92445281484804,3.51497892375155,6.02732687130279,7.41928034614421,2.87505128729943,0,0,0,13.1202312378333,12.3209379173665,5.67239301505187,97.1119012126069,111.617096626399,84.2995766663218,4.40497891689872,2.66788438833342,0.899899717281399,0,0.7104801149461,1.49800055259202,2.30530983192933,51.7411165419304,44.1469418344628,46.4818164586554,72.5553500385661,81.0587545292422,64.7976327847107,63.258010872036,56.0723459832113,84.7892283695293,123.856717942632,127.18620953617,113.422207447967,135.401712531566,137.521129826985,80.4047037123977,110.864234176241,110.931527885964,146.135778394939,156.466477198214,116.313254194988,2.04460721999597,4.38315048619356,0.579728977403356,0,0,0.539703191637817,0,0,3.23022166303029,0,0,0,7.74638808771743,0,0,0,0,0,0,4.11061966988616,0,10.6878340126674,34.523580026461,30.7510133095263,22.1390877365816,18.9910527096304,27.1629913483478,4.52399728786832,2.22475470960936,2.74738778147832,0.884610551949874,17.1472860944254,1.98757366614354,4.363877278217,0,67.9251449066789,70.5835401961344,1.02182822083437,0.11981512450592,0,0,149.491058126013,113.002648896201,103.916149197339,102.730173233635,87.7104018643034,126.958495225891,115.02905551504,51.9380755636613,2.73695335342205,1.0108910337347,9.04899980311838,48.6650456680512,27.3583504275833,45.7357809705587,46.8691983469074,44.6999799424224,44.8398020996974,32.6082001467856,26.1290404446406,30.1795190105979,55.2189754090032,44.691585537643,35.5097086532671,48.1021741160284,34.1287123191723,27.9863705514803,33.2387225586884,0,0,0,36.2470101937128,38.2277477769187,30.0703642639895,39.5363708427301,28.1372851398787,32.5503608192368,23.0208605302904,17.9743178937745,22.3021803921294,17.6079039407424,8.53670813211295,5.51267904911819,3.50879969820798,3.73235195994786,2.01309628140558,101.149465259345,101.361043193595,0,1.58670339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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:56191 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9Q886,uniprot:E9Q098,uniprot:E9Q1E1 | |||
|association_with_transcript=0bp_to_ENSMUST00000087253,ENSMUST00000151403,ENSMUST00000163450_5end | |||
|cluster_id=chrX:147091935..147091950,- | |||
|description=CAGE_peak_1_at_Tro_5end | |||
|id=chrX:147091935..147091950,- | |||
|ontology_enrichment_celltype=CL:0000117!5.27e-14!23;CL:0000337!5.27e-14!23;CL:0000540!7.83e-13!33;CL:0000047!7.83e-13!33;CL:0000031!7.83e-13!33;CL:0000404!7.83e-13!33;CL:0000393!3.43e-10!39;CL:0000211!3.43e-10!39;CL:0002319!5.55e-09!43;CL:0000221!8.43e-09!44;CL:0000133!8.43e-09!44;CL:0000055!8.44e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.35e-14,23;CL:0000337,3.35e-14,23;CL:0000540,5.19e-13,33;CL:0000047,5.19e-13,33;CL:0000031,5.19e-13,33;CL:0000404,5.19e-13,33;CL:0000393,6.10e-10,39;CL:0000211,6.10e-10,39;CL:0002319,4.23e-09,43;CL:0000221,6.47e-09,44;CL:0000133,6.47e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.28e-26!73;UBERON:0005743!1.28e-26!73;UBERON:0002346!5.32e-26!71;UBERON:0003075!5.32e-26!71;UBERON:0007284!5.32e-26!71;UBERON:0000073!1.16e-25!75;UBERON:0001016!1.16e-25!75;UBERON:0001049!1.43e-24!52;UBERON:0005068!1.43e-24!52;UBERON:0006241!1.43e-24!52;UBERON:0007135!1.43e-24!52;UBERON:0000955!3.56e-23!50;UBERON:0006238!3.56e-23!50;UBERON:0000033!5.82e-23!63;UBERON:0004121!8.34e-23!102;UBERON:0000924!8.34e-23!102;UBERON:0006601!8.34e-23!102;UBERON:0002616!1.45e-22!49;UBERON:0003056!4.52e-21!49;UBERON:0003080!2.09e-19!40;UBERON:0002780!1.14e-18!39;UBERON:0001890!1.14e-18!39;UBERON:0006240!1.14e-18!39;UBERON:0002020!1.24e-17!34;UBERON:0002791!1.81e-14!29;UBERON:0003528!1.81e-14!29;UBERON:0001893!1.81e-14!29;UBERON:0000153!6.10e-11!94;UBERON:0000468!3.21e-10!333;UBERON:0007811!8.49e-10!86;UBERON:0000025!1.35e-09!114;UBERON:0000956!1.69e-09!21;UBERON:0001869!1.69e-09!21;UBERON:0000203!1.69e-09!21;UBERON:0004111!2.46e-08!122;UBERON:0002619!7.42e-08!17;UBERON:0000922!1.04e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.12e-27,73;UBERON:0002346,7.12e-27,64;UBERON:0003075,7.12e-27,64;UBERON:0007284,7.12e-27,64;UBERON:0000073,2.26e-26,54;UBERON:0001016,4.80e-26,75;UBERON:0001049,6.14e-25,52;UBERON:0005068,6.14e-25,52;UBERON:0006241,6.14e-25,52;UBERON:0007135,6.14e-25,52;UBERON:0010314,3.85e-24,92;UBERON:0004121,5.06e-22,95;UBERON:0000924,5.06e-22,95;UBERON:0006601,5.06e-22,95;UBERON:0010371,1.02e-21,73;UBERON:0000955,1.92e-21,47;UBERON:0006238,1.92e-21,47;UBERON:0003056,2.21e-21,49;UBERON:0002616,7.76e-21,46;UBERON:0003080,1.09e-19,40;UBERON:0002780,6.11e-19,39;UBERON:0001890,6.11e-19,39;UBERON:0006240,6.11e-19,39;UBERON:0002020,6.87e-18,34;UBERON:0003528,1.13e-14,29;UBERON:0002791,1.13e-14,29;UBERON:0001893,1.13e-14,29;UBERON:0000956,1.27e-09,21;UBERON:0001869,1.27e-09,21;UBERON:0000203,1.27e-09,21;UBERON:0000025,2.57e-09,114;UBERON:0002619,5.89e-08,17;UBERON:0004111,7.20e-08,122;UBERON:0000922,2.39e-07,320 | |||
|phase1_expression=19.3780104996801,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,22.3663853097314,0.198581902401771,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0.755380907853464,0.811015449756117,1.28482726513177,3.12956537739216,3.92445281484804,3.51497892375155,6.02732687130279,7.41928034614421,2.87505128729943,0,0,0,13.1202312378333,12.3209379173665,5.67239301505187,97.1119012126069,111.617096626399,84.2995766663218,4.40497891689872,2.66788438833342,0.899899717281399,0,0.7104801149461,1.49800055259202,2.30530983192933,51.7411165419304,44.1469418344628,46.4818164586554,72.5553500385661,81.0587545292422,64.7976327847107,63.258010872036,56.0723459832113,84.7892283695293,123.856717942632,127.18620953617,113.422207447967,135.401712531566,137.521129826985,80.4047037123977,110.864234176241,110.931527885964,146.135778394939,156.466477198214,116.313254194988,2.04460721999597,4.38315048619356,0.579728977403356,0,0,0.539703191637817,0,0,3.23022166303029,0,0,0,7.74638808771743,0,0,0,0,0,0,4.11061966988616,0,10.6878340126674,34.523580026461,30.7510133095263,22.1390877365816,18.9910527096304,27.1629913483478,4.52399728786832,2.22475470960936,2.74738778147832,0.884610551949874,17.1472860944254,1.98757366614354,4.363877278217,0,67.9251449066789,70.5835401961344,1.02182822083437,0.11981512450592,0,0,149.491058126013,113.002648896201,103.916149197339,102.730173233635,87.7104018643034,126.958495225891,115.02905551504,51.9380755636613,2.73695335342205,1.0108910337347,9.04899980311838,48.6650456680512,27.3583504275833,45.7357809705587,46.8691983469074,44.6999799424224,44.8398020996974,32.6082001467856,26.1290404446406,30.1795190105979,55.2189754090032,44.691585537643,35.5097086532671,48.1021741160284,34.1287123191723,27.9863705514803,33.2387225586884,0,0,0,36.2470101937128,38.2277477769187,30.0703642639895,39.5363708427301,28.1372851398787,32.5503608192368,23.0208605302904,17.9743178937745,22.3021803921294,17.6079039407424,8.53670813211295,5.51267904911819,3.50879969820798,3.73235195994786,2.01309628140558,101.149465259345,101.361043193595,0,1.58670339998127,40.5247676016944,42.7315476223207,25.3868898804524,19.3616183638409,12.6755484991576,12.935342575654,0.949058123089023,8.23494773620054,6.53471542880701,6.36660710531683,6.23885078781184,0,1.94524244887225,1.99141273254367,23.5188197181821,33.1320686568214,14.6520056375005,31.5659558160237,24.0501084087856,18.5859922709344,8.78987866027176,2.06654207171443,0.470996183524124,0.740382983530803,0,10.67808676583,9.23827277032054,4.72210436008193,3.65148218499305,2.65294875727659,2.03700681425136,2.5892652370573,3.08056930872567,1.37280706594041,2.87536413054709,0.744281895337007,1.5601883655728,0.505157755894224,0.358794827043824,0,1.66277871149944,28.4237117655727,34.3856100292675,28.007939152906,24.4077858220042,12.8979818230198,6.9032655856944,8.78101415360095,16.2364198429377,14.8381342064679,9.56728611944923,1.96635977658886,1.38147985492716,1.3018415272336,0,0,0.491764273019036,1.93155722413313,101.467972872285,100.684838782703,0,1.26235463602186,27.1337068697981,23.0358859135017,30.1592756825919,16.2498782607735,21.3886727119098,19.2492040936406,19.4309136803949,27.179794785752,31.2277344577754,89.3273259652624,9.65192579416227,37.7499079774581,49.5176356434871,10.8880281161873,0,16.9946445308487,10.883648050731,12.8251454234011,11.5167738223501,14.4494519533646,10.0787034335606,7.99774204850512,7.12994756769443,2.52829406348653,1.05418608574999,1.03135543248187,48.3424240170379,43.9349069436397,34.797485937561,37.9376552005918,67.389288784064,65.9964625127661,60.0603925197742,38.9715134866687,4.4587624532105,10.3797714723272,2.64634077665954,0.49465875882444,8.07322133479528,5.97097956788743,2.626191568069,0.656563598980245,2.91480836629851,109.771778790222,0.341741761595705,16.0981757011314,9.4449208958553,1.69531611304222,0.956859594047176,0.228778173206523,1.18984900995699,1.81936888020755,2.07299960706636,0.954670618015114,43.4961991174061,34.970948345818,27.9733832728465,22.9997125615916,20.7444435558869,13.6212989848669,10.7449492442937,1.30877970992015,1.68499465279331,0.621339313086926,2.25477175473676,32.5946070375874,18.2004339502807,32.473348453456,28.5443209885786,35.3118302275726,31.4517399570621,24.0878111961308,15.938620352708,5.31485065817213,3.45636007509439,0.632022241256357,17.231643299664,16.9473079321965,5.3267537420896,3.93858730468459,3.3775830312815,0.360586348559907,0.443068581523732,0.807731599585181,0.457240839929999,0.705783295957884,0.194915761479505,0.288635524920988,0.350630706544707,0.906921534460845,0.665957860122194,0.0897138566094757,0.335769232728157,2.70465431645067,3.94133198447482,8.97442958909599,1.92931541171159,2.00628841614145,97.7020687727525,105.874804396651,93.3819686906216,105.861560323712,63.7126743386697,69.4962385598524,80.3276775275849,81.9584589868081,87.9096273429357,72.4864436452548,43.1755365950175,75.4157010727949,45.4151391305997,48.3782366965905,46.953348428668,33.45951853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| |||
|short_description=p1@Tro | |||
}} |
Revision as of 02:07, 6 August 2015
Short description: | p1@Tro |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tro_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000087253, ENSMUST00000151403, ENSMUST00000163450_5end |
EntrezGene: | 56191 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.35e-14 | 23 |
neuroblast (sensu Vertebrata) | 3.35e-14 | 23 |
neuron | 5.19e-13 | 33 |
neuronal stem cell | 5.19e-13 | 33 |
neuroblast | 5.19e-13 | 33 |
electrically signaling cell | 5.19e-13 | 33 |
electrically responsive cell | 6.10e-10 | 39 |
electrically active cell | 6.10e-10 | 39 |
neural cell | 4.23e-09 | 43 |
ectodermal cell | 6.47e-09 | 44 |
neurectodermal cell | 6.47e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.12e-27 | 73 |
neurectoderm | 7.12e-27 | 64 |
neural plate | 7.12e-27 | 64 |
presumptive neural plate | 7.12e-27 | 64 |
regional part of nervous system | 2.26e-26 | 54 |
nervous system | 4.80e-26 | 75 |
neural tube | 6.14e-25 | 52 |
neural rod | 6.14e-25 | 52 |
future spinal cord | 6.14e-25 | 52 |
neural keel | 6.14e-25 | 52 |
structure with developmental contribution from neural crest | 3.85e-24 | 92 |
ectoderm-derived structure | 5.06e-22 | 95 |
ectoderm | 5.06e-22 | 95 |
presumptive ectoderm | 5.06e-22 | 95 |
ecto-epithelium | 1.02e-21 | 73 |
brain | 1.92e-21 | 47 |
future brain | 1.92e-21 | 47 |
pre-chordal neural plate | 2.21e-21 | 49 |
regional part of brain | 7.76e-21 | 46 |
anterior neural tube | 1.09e-19 | 40 |
regional part of forebrain | 6.11e-19 | 39 |
forebrain | 6.11e-19 | 39 |
future forebrain | 6.11e-19 | 39 |
gray matter | 6.87e-18 | 34 |
brain grey matter | 1.13e-14 | 29 |
regional part of telencephalon | 1.13e-14 | 29 |
telencephalon | 1.13e-14 | 29 |
cerebral cortex | 1.27e-09 | 21 |
cerebral hemisphere | 1.27e-09 | 21 |
pallium | 1.27e-09 | 21 |
tube | 2.57e-09 | 114 |
regional part of cerebral cortex | 5.89e-08 | 17 |
anatomical conduit | 7.20e-08 | 122 |
embryo | 2.39e-07 | 320 |