FFCP PHASE1:Mm9::chr3:32264565..32264613,-: Difference between revisions
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{{FFCP|EntrezGene=22401|HGNC=|UniProt=B9EI21|association_with_transcript=0bp_to_ENSMUST00000029199,NM_009517,uc008owc.1_5end|description=CAGE_peak_1_at_Zmat3_5end|id=chr3:32264565..32264613,-|ontology_enrichment_celltype=CL:0000055!2.30e-14!50;CL:0000221!8.45e-12!44;CL:0000133!8.45e-12!44;CL:0002319!8.59e-12!43;CL:0002321!5.39e-11!70;CL:0000220!5.39e-11!70;CL:0000393!9.95e-11!39;CL:0000211!9.95e-11!39;CL:0000540!1.50e-07!33;CL:0000047!1.50e-07!33;CL:0000031!1.50e-07!33;CL:0000404!1.50e-07!33|ontology_enrichment_celltype_v019_2=CL:0000221,8.44e-12,44;CL:0000133,8.44e-12,44;CL:0002319,8.58e-12,43;CL:0002321,5.38e-11,70;CL:0000393,9.94e-11,39;CL:0000211,9.94e-11,39;CL:0000540,1.50e-07,33;CL:0000047,1.50e-07,33;CL:0000031,1.50e-07,33;CL:0000404,1.50e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!9.16e-22!75;UBERON:0001016!9.16e-22!75;UBERON:0001017!4.90e-21!73;UBERON:0005743!4.90e-21!73;UBERON:0004121!1.52e-19!102;UBERON:0000924!1.52e-19!102;UBERON:0006601!1.52e-19!102;UBERON:0000955!3.10e-12!50;UBERON:0006238!3.10e-12!50;UBERON:0002616!7.56e-12!49;UBERON:0001049!9.67e-12!52;UBERON:0005068!9.67e-12!52;UBERON:0006241!9.67e-12!52;UBERON:0007135!9.67e-12!52;UBERON:0002346!4.46e-11!71;UBERON:0003075!4.46e-11!71;UBERON:0007284!4.46e-11!71;UBERON:0000033!7.42e-11!63;UBERON:0002020!1.59e-08!34;UBERON:0003080!4.74e-08!40;UBERON:0002791!7.10e-08!29;UBERON:0003528!7.10e-08!29;UBERON:0001893!7.10e-08!29;UBERON:0002780!1.25e-07!39;UBERON:0001890!1.25e-07!39;UBERON:0006240!1.25e-07!39;UBERON:0000010!3.62e-07!11;UBERON:0003056!8.40e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.14e-22,75;UBERON:0001017,4.89e-21,73;UBERON:0004121,4.23e-20,95;UBERON:0000924,4.23e-20,95;UBERON:0006601,4.23e-20,95;UBERON:0000073,1.32e-12,54;UBERON:0001049,9.66e-12,52;UBERON:0005068,9.66e-12,52;UBERON:0006241,9.66e-12,52;UBERON:0007135,9.66e-12,52;UBERON:0002346,1.27e-11,64;UBERON:0003075,1.27e-11,64;UBERON:0007284,1.27e-11,64;UBERON:0010371,1.48e-11,73;UBERON:0000955,7.50e-11,47;UBERON:0006238,7.50e-11,47;UBERON:0002616,1.78e-10,46;UBERON:0010314,9.11e-09,92;UBERON:0002020,1.59e-08,34;UBERON:0003080,4.73e-08,40;UBERON:0003528,7.09e-08,29;UBERON:0002791,7.09e-08,29;UBERON:0001893,7.09e-08,29;UBERON:0002780,1.25e-07,39;UBERON:0001890,1.25e-07,39;UBERON:0006240,1.25e-07,39;UBERON:0000010,3.61e-07,11;UBERON:0003056,8.40e-07,49|phase1_expression=12.6517589212787,16.40184415905,12.739978702907,6.65421264875026,9.01612313903425,16.1164101035414,10.2789561862031,7.87652272993615,1.97104211012333,3.7450324211519,7.53359060192222,7.49858294556162,6.16322627752341,5.42006494997784,0.999329285446988,2.22722794128809,2.79824751251259,1.73504190947031,2.33094537129756,3.81950686618227,13.6919697143222,12.0142050953071,9.40319240900167,19.5190755807956,14.4527847072317,20.0981187440257,15.9381938578858,17.8841123129288,8.36103045608045,7.56090389279792,12.4169085966971,29.8464416526027,30.7532393792285,15.8481681015439,1.1554064790051,2.99222361645286,3.06254034393554,0,0.7813353445238,0.523523743973798,1.76469446409304,0,0,99.458486200706,101.376931219515,66.4439242825287,41.4667412504461,20.2763395433815,30.7560655828261,37.3305406222624,48.7152747256262,37.3756667348926,1.8456086666351,6.5282592781021,3.36093799142464,49.3938117189018,23.7822755149168,56.7239301505187,11.1274053472779,7.93486468908049,13.9442908771359,86.4053556776287,71.1435836888911,31.0465402462083,20.7661936139065,24.1563239081674,56.0252206669417,39.1902671427986,8.8136170462206,11.0704869431986,9.25429829946081,17.424710048632,17.6694832761291,10.4117179332711,10.9263836960789,11.0306254393203,42.9451935897616,32.9433332259784,35.0222895824235,11.2103344570665,8.41686321142169,10.4182674111352,34.3395088771699,16.8828783009504,28.1148775909331,16.2045722010517,15.6608848879013,8.94717339961443,19.764536459961,18.7417469064828,6.37701875143691,3.44169550792555,5.439770669662,2.69851595818909,7.14754059192436,4.48026887097336,8.28622078777336,12.7822741933543,11.1707981979234,9.18682893726885,11.5491604216878,11.5493829672886,12.7402619853323,35.5533351576666,18.6182295269644,17.988550448732,19.2099289105618,5.709193985953,17.8667139716548,17.2192881315197,9.02123699183906,9.74289530598852,5.99600292865752,10.5505848386836,9.52468527799209,10.9329934456818,26.9442514830468,11.5679485535929,2.65383165584962,9.86777784679196,2.20841518460394,3.87900202508178,27.9587641827183,30.4492028892009,25.761944938055,12.2619386500124,0.239630249011841,0,0.635351135365324,38.3464036876346,50.7825669128675,14.7015591972051,44.3252016490305,49.8645141794145,39.0641523771973,42.182728397617,7.12875546952214,5.59831367745419,5.05445516867349,16.414464759145,11.3204785377552,7.35686734187113,7.02242306240862,8.59017461663576,7.68812440410005,8.19927809823039,8.4331552103756,12.1590584247337,9.91612767491074,11.535470890237,10.9089696981648,7.01426343768239,10.5657954705727,15.3230953269753,11.9353639116607,5.7719937377363,0,0.5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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:22401 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:B9EI21 | |||
|association_with_transcript=0bp_to_ENSMUST00000029199,NM_009517,uc008owc.1_5end | |||
|cluster_id=chr3:32264565..32264613,- | |||
|description=CAGE_peak_1_at_Zmat3_5end | |||
|id=chr3:32264565..32264613,- | |||
|ontology_enrichment_celltype=CL:0000055!2.30e-14!50;CL:0000221!8.45e-12!44;CL:0000133!8.45e-12!44;CL:0002319!8.59e-12!43;CL:0002321!5.39e-11!70;CL:0000220!5.39e-11!70;CL:0000393!9.95e-11!39;CL:0000211!9.95e-11!39;CL:0000540!1.50e-07!33;CL:0000047!1.50e-07!33;CL:0000031!1.50e-07!33;CL:0000404!1.50e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,8.44e-12,44;CL:0000133,8.44e-12,44;CL:0002319,8.58e-12,43;CL:0002321,5.38e-11,70;CL:0000393,9.94e-11,39;CL:0000211,9.94e-11,39;CL:0000540,1.50e-07,33;CL:0000047,1.50e-07,33;CL:0000031,1.50e-07,33;CL:0000404,1.50e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.16e-22!75;UBERON:0001016!9.16e-22!75;UBERON:0001017!4.90e-21!73;UBERON:0005743!4.90e-21!73;UBERON:0004121!1.52e-19!102;UBERON:0000924!1.52e-19!102;UBERON:0006601!1.52e-19!102;UBERON:0000955!3.10e-12!50;UBERON:0006238!3.10e-12!50;UBERON:0002616!7.56e-12!49;UBERON:0001049!9.67e-12!52;UBERON:0005068!9.67e-12!52;UBERON:0006241!9.67e-12!52;UBERON:0007135!9.67e-12!52;UBERON:0002346!4.46e-11!71;UBERON:0003075!4.46e-11!71;UBERON:0007284!4.46e-11!71;UBERON:0000033!7.42e-11!63;UBERON:0002020!1.59e-08!34;UBERON:0003080!4.74e-08!40;UBERON:0002791!7.10e-08!29;UBERON:0003528!7.10e-08!29;UBERON:0001893!7.10e-08!29;UBERON:0002780!1.25e-07!39;UBERON:0001890!1.25e-07!39;UBERON:0006240!1.25e-07!39;UBERON:0000010!3.62e-07!11;UBERON:0003056!8.40e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.14e-22,75;UBERON:0001017,4.89e-21,73;UBERON:0004121,4.23e-20,95;UBERON:0000924,4.23e-20,95;UBERON:0006601,4.23e-20,95;UBERON:0000073,1.32e-12,54;UBERON:0001049,9.66e-12,52;UBERON:0005068,9.66e-12,52;UBERON:0006241,9.66e-12,52;UBERON:0007135,9.66e-12,52;UBERON:0002346,1.27e-11,64;UBERON:0003075,1.27e-11,64;UBERON:0007284,1.27e-11,64;UBERON:0010371,1.48e-11,73;UBERON:0000955,7.50e-11,47;UBERON:0006238,7.50e-11,47;UBERON:0002616,1.78e-10,46;UBERON:0010314,9.11e-09,92;UBERON:0002020,1.59e-08,34;UBERON:0003080,4.73e-08,40;UBERON:0003528,7.09e-08,29;UBERON:0002791,7.09e-08,29;UBERON:0001893,7.09e-08,29;UBERON:0002780,1.25e-07,39;UBERON:0001890,1.25e-07,39;UBERON:0006240,1.25e-07,39;UBERON:0000010,3.61e-07,11;UBERON:0003056,8.40e-07,49 | |||
|phase1_expression=12.6517589212787,16.40184415905,12.739978702907,6.65421264875026,9.01612313903425,16.1164101035414,10.2789561862031,7.87652272993615,1.97104211012333,3.7450324211519,7.53359060192222,7.49858294556162,6.16322627752341,5.42006494997784,0.999329285446988,2.22722794128809,2.79824751251259,1.73504190947031,2.33094537129756,3.81950686618227,13.6919697143222,12.0142050953071,9.40319240900167,19.5190755807956,14.4527847072317,20.0981187440257,15.9381938578858,17.8841123129288,8.36103045608045,7.56090389279792,12.4169085966971,29.8464416526027,30.7532393792285,15.8481681015439,1.1554064790051,2.99222361645286,3.06254034393554,0,0.7813353445238,0.523523743973798,1.76469446409304,0,0,99.458486200706,101.376931219515,66.4439242825287,41.4667412504461,20.2763395433815,30.7560655828261,37.3305406222624,48.7152747256262,37.3756667348926,1.8456086666351,6.5282592781021,3.36093799142464,49.3938117189018,23.7822755149168,56.7239301505187,11.1274053472779,7.93486468908049,13.9442908771359,86.4053556776287,71.1435836888911,31.0465402462083,20.7661936139065,24.1563239081674,56.0252206669417,39.1902671427986,8.8136170462206,11.0704869431986,9.25429829946081,17.424710048632,17.6694832761291,10.4117179332711,10.9263836960789,11.0306254393203,42.9451935897616,32.9433332259784,35.0222895824235,11.2103344570665,8.41686321142169,10.4182674111352,34.3395088771699,16.8828783009504,28.1148775909331,16.2045722010517,15.6608848879013,8.94717339961443,19.764536459961,18.7417469064828,6.37701875143691,3.44169550792555,5.439770669662,2.69851595818909,7.14754059192436,4.48026887097336,8.28622078777336,12.7822741933543,11.1707981979234,9.18682893726885,11.5491604216878,11.5493829672886,12.7402619853323,35.5533351576666,18.6182295269644,17.988550448732,19.2099289105618,5.709193985953,17.8667139716548,17.2192881315197,9.02123699183906,9.74289530598852,5.99600292865752,10.5505848386836,9.52468527799209,10.9329934456818,26.9442514830468,11.5679485535929,2.65383165584962,9.86777784679196,2.20841518460394,3.87900202508178,27.9587641827183,30.4492028892009,25.761944938055,12.2619386500124,0.239630249011841,0,0.635351135365324,38.3464036876346,50.7825669128675,14.7015591972051,44.3252016490305,49.8645141794145,39.0641523771973,42.182728397617,7.12875546952214,5.59831367745419,5.05445516867349,16.414464759145,11.3204785377552,7.35686734187113,7.02242306240862,8.59017461663576,7.68812440410005,8.19927809823039,8.4331552103756,12.1590584247337,9.91612767491074,11.535470890237,10.9089696981648,7.01426343768239,10.5657954705727,15.3230953269753,11.9353639116607,5.7719937377363,0,0.51469581422943,0,9.94203708170409,7.73935997937617,8.10279276574567,10.4167683657493,8.85439042863317,5.39934895105824,5.58081467400979,8.04820204198858,5.13767506415546,7.5697530960201,8.53670813211295,6.89084881139774,6.43279944671462,7.02560368931362,5.36825675041487,27.1274033647724,11.6282211988591,12.5559137533843,8.72686869989696,8.74481827194459,10.6828869055802,8.11865006329188,8.47070803418039,11.7860363237781,8.75037880117772,7.59246498471219,8.39964669092456,6.53471542880701,7.36138946552258,9.74820435595601,18.8752075817387,9.51007419448655,11.5501938487533,5.50036912763937,7.42615331963237,9.01661885384643,6.10953983535943,9.30971938404604,8.27602674705759,11.4458132194906,10.3327103585722,13.6588893221996,13.5736880313981,6.81841042300442,4.00428253718626,2.35870794135844,1.57403478669398,2.63718157805054,3.61765739628625,3.05551022137704,2.30156909960649,4.21551589615092,3.84385978463314,7.18841032636773,1.86070473834252,4.36852742360385,5.55673531483646,8.7904732625737,5.30687873499704,13.6717360723287,3.41084541186873,6.35563408123901,7.80827394565865,6.80601720036656,5.52770649557992,10.9500074807566,12.2934198150413,10.0886492227962,7.9727288273559,12.437471955284,11.7981586595331,11.569893785015,14.0309586824066,13.5712155545345,7.61467957346193,8.35999264132362,5.79467167239938,40.9404004468869,40.6724552474945,32.6230541299584,5.55436039849621,39.1230192076158,40.996068151147,39.637905182835,56.6356051147548,45.0053321646436,51.2368520727787,53.8398233227609,53.7750778556814,50.2015477992085,28.276275845119,13.6262481799938,8.19101776869374,6.18970445543589,19.1365342648141,27.8764790513922,6.79785781233948,6.95344181018927,13.013750503157,11.8120757152309,10.1453598821496,11.8877014857382,10.5424781548477,11.0514187299264,15.8018378967908,30.5713964867496,28.8779521094923,17.702859499197,7.92268813737765,9.57254259992383,10.502514716548,7.62563004661776,11.0588666913284,8.88564711251453,8.22055362609418,15.2536610241412,13.3454204644207,15.4369878638473,13.1909002353184,10.4951877352339,14.7766666073982,10.504766272276,14.6085400773105,8.45294426226567,45.9854748986064,4.78438466233988,4.54051109519089,3.33350149265481,2.0720530270516,2.59719032669948,3.88922894451088,0.339956859987711,0.979660166265606,0.829199842826543,21.0027535963325,6.48488786841327,14.0290432317526,11.4485661271109,15.4725339050707,16.8139174084557,17.9369580691812,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| |||
|short_description=p1@Zmat3 | |||
}} |
Revision as of 09:16, 6 August 2015
Short description: | p1@Zmat3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Zmat3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000029199, NM_009517, uc008owc.1_5end |
EntrezGene: | 22401 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 8.44e-12 | 44 |
neurectodermal cell | 8.44e-12 | 44 |
neural cell | 8.58e-12 | 43 |
embryonic cell | 5.38e-11 | 70 |
electrically responsive cell | 9.94e-11 | 39 |
electrically active cell | 9.94e-11 | 39 |
neuron | 1.50e-07 | 33 |
neuronal stem cell | 1.50e-07 | 33 |
neuroblast | 1.50e-07 | 33 |
electrically signaling cell | 1.50e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 9.14e-22 | 75 |
central nervous system | 4.89e-21 | 73 |
ectoderm-derived structure | 4.23e-20 | 95 |
ectoderm | 4.23e-20 | 95 |
presumptive ectoderm | 4.23e-20 | 95 |
regional part of nervous system | 1.32e-12 | 54 |
neural tube | 9.66e-12 | 52 |
neural rod | 9.66e-12 | 52 |
future spinal cord | 9.66e-12 | 52 |
neural keel | 9.66e-12 | 52 |
neurectoderm | 1.27e-11 | 64 |
neural plate | 1.27e-11 | 64 |
presumptive neural plate | 1.27e-11 | 64 |
ecto-epithelium | 1.48e-11 | 73 |
brain | 7.50e-11 | 47 |
future brain | 7.50e-11 | 47 |
regional part of brain | 1.78e-10 | 46 |
structure with developmental contribution from neural crest | 9.11e-09 | 92 |
gray matter | 1.59e-08 | 34 |
anterior neural tube | 4.73e-08 | 40 |
brain grey matter | 7.09e-08 | 29 |
regional part of telencephalon | 7.09e-08 | 29 |
telencephalon | 7.09e-08 | 29 |
regional part of forebrain | 1.25e-07 | 39 |
forebrain | 1.25e-07 | 39 |
future forebrain | 1.25e-07 | 39 |
peripheral nervous system | 3.61e-07 | 11 |
pre-chordal neural plate | 8.40e-07 | 49 |