FFCP PHASE1:Mm9::chr11:69139786..69139816,+: Difference between revisions
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{{FFCP|EntrezGene=16499|HGNC=|MCL_coexpression_id=1|UniProt=Q8VD73,Q8C439,Q8C7S9|association_with_transcript=26bp_to_ENSMUST00000018614,NM_010599,uc007jps.1_5end|description=CAGE_peak_1_at_Kcnab3_5end|id=chr11:69139786..69139816,+|ontology_enrichment_celltype=CL:0000117!1.68e-07!23;CL:0000337!1.68e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,2.05e-07,23;CL:0000337,2.05e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!5.14e-21!102;UBERON:0000924!5.14e-21!102;UBERON:0006601!5.14e-21!102;UBERON:0002346!6.62e-20!71;UBERON:0003075!6.62e-20!71;UBERON:0007284!6.62e-20!71;UBERON:0000073!9.69e-18!75;UBERON:0001016!9.69e-18!75;UBERON:0001017!4.49e-17!73;UBERON:0005743!4.49e-17!73;UBERON:0000033!5.04e-17!63;UBERON:0001049!1.02e-14!52;UBERON:0005068!1.02e-14!52;UBERON:0006241!1.02e-14!52;UBERON:0007135!1.02e-14!52;UBERON:0000955!3.10e-14!50;UBERON:0006238!3.10e-14!50;UBERON:0002616!1.39e-13!49;UBERON:0003056!2.13e-12!49;UBERON:0002020!8.70e-12!34;UBERON:0000153!2.25e-10!94;UBERON:0007811!3.24e-10!86;UBERON:0003080!4.75e-10!40;UBERON:0002791!1.84e-09!29;UBERON:0003528!1.84e-09!29;UBERON:0001893!1.84e-09!29;UBERON:0002780!1.86e-09!39;UBERON:0001890!1.86e-09!39;UBERON:0006240!1.86e-09!39;UBERON:0000956!2.07e-08!21;UBERON:0001869!2.07e-08!21;UBERON:0000203!2.07e-08!21;UBERON:0002619!1.59e-07!17;UBERON:0002021!2.46e-07!10;UBERON:0000411!2.46e-07!10;UBERON:0001950!2.46e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.24e-17,64;UBERON:0003075,1.24e-17,64;UBERON:0007284,1.24e-17,64;UBERON:0001016,3.67e-17,75;UBERON:0004121,5.07e-17,95;UBERON:0000924,5.07e-17,95;UBERON:0006601,5.07e-17,95;UBERON:0001017,1.80e-16,73;UBERON:0000073,3.94e-16,54;UBERON:0010371,2.13e-15,73;UBERON:0001049,8.92e-15,52;UBERON:0005068,8.92e-15,52;UBERON:0006241,8.92e-15,52;UBERON:0007135,8.92e-15,52;UBERON:0010314,1.45e-12,92;UBERON:0000955,2.56e-12,47;UBERON:0006238,2.56e-12,47;UBERON:0003056,3.71e-12,49;UBERON:0002020,9.64e-12,34;UBERON:0002616,1.14e-11,46;UBERON:0003080,1.07e-09,40;UBERON:0003528,2.60e-09,29;UBERON:0002791,2.60e-09,29;UBERON:0001893,2.60e-09,29;UBERON:0002780,4.34e-09,39;UBERON:0001890,4.34e-09,39;UBERON:0006240,4.34e-09,39;UBERON:0000956,1.21e-08,21;UBERON:0001869,1.21e-08,21;UBERON:0000203,1.21e-08,21;UBERON:0002619,1.06e-07,17;UBERON:0002021,1.08e-07,10;UBERON:0000411,1.08e-07,10;UBERON:0001950,1.08e-07,10|phase1_expression=2.5623815536767,0,0,0,0,0.503637815735669,0.467225281191051,0.516493293766305,0.563154888606667,0.234064526321993,0,0.0797721589953364,0.684802919724823,1.31130603628496,0,0,0,0.157731082679119,0.411343300817216,0,9.35476191661768,0.198581902401771,1.30599894569468,0.319984845586813,0.22940928106717,0,0,0,0.190023419456374,0.252030129759931,0,2.54012269383853,2.46025915033828,0,0,0.166234645358492,0.408338712524738,0,0,0,0,0,0,0,0.304130793658544,0.367093504323363,0,4.14247797122848,1.09843091367236,0.58328969722285,1.53985063787899,2.87505128729943,0.167782606057736,0,0.672187598284928,0.514518872071894,0.573066879877513,0,3.43937983461316,1.5869729378161,2.53532561402472,0.677689064138264,0,0,0,1.4209602298922,2.69640099466564,1.53687322128622,1.76272340924412,2.70011876663381,2.10324961351382,10.8547374073445,7.95126747425809,3.91970557487853,2.68367318851062,8.27296907949019,93.5984988494804,77.2508395415386,74.8063816957906,0.923204014111357,1.18933936683133,0.52091337055676,76.216958727377,32.6402313818374,28.4204740864867,6.18720029494702,7.54569908235246,4.84638559145781,2.19605960666234,5.7434385681157,1.73918693221007,0,0,0,0.649776417447669,1.79210754838934,1.26399978118577,3.40860645156115,3.11743205523443,3.5333957451034,1.69012103732017,1.28326477414318,5.09610479413291,0,0.216491041011214,0.506719730950197,0.505524445014783,2.51204535381932,0.776813650941515,6.23456984072264,2.25530924795977,2.74018930480927,2.7673859670727,2.56228488939458,2.58695155698551,4.77533047052767,0.247194967734374,1.44599356919912,0,0.323533699894818,1.10420759230197,0,0,14.9318206475889,14.4518227701284,1.27728527604296,0.239630249011841,0,0,100.809100319446,30.652540388848,2.89005009859588,53.8855392596057,32.7315785382823,40.5186686891142,26.4453258800445,1.01839363850316,1.61729061793121,1.0108910337347,4.41927897361595,1.17108398666433,2.5289231487682,1.26043490863744,3.46621081022145,4.83059143974428,7.43059577652129,5.43470002446427,13.1938719076898,1.07783996466421,1.70195472151037,1.93546236580344,0.876782929710299,1.94633074457919,2.78601733217733,2.26360350048738,1.39323986772945,0.702213187313235,0,0,0.207125772535502,0,0.720248245844059,0.946978942340841,1.77087808572663,1.07986979021165,0.465067889500816,0.804820204198858,1.16765342367169,1.81015834904829,1.14917224855367,1.21603214318784,0.730999937126662,1.3173006917463,0.671032093801859,16.4026159880019,2.16099685996497,0,0.264450566663544,1.2797295032114,1.39342003116263,1.15980715189884,1.4117846723634,2.44615848229357,0.760902504450237,0,1.64698954724011,1.75934646160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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:16499 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8VD73,uniprot:Q8C439,uniprot:Q8C7S9 | |||
|association_with_transcript=26bp_to_ENSMUST00000018614,NM_010599,uc007jps.1_5end | |||
|cluster_id=chr11:69139786..69139816,+ | |||
|description=CAGE_peak_1_at_Kcnab3_5end | |||
|id=chr11:69139786..69139816,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.68e-07!23;CL:0000337!1.68e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.05e-07,23;CL:0000337,2.05e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.14e-21!102;UBERON:0000924!5.14e-21!102;UBERON:0006601!5.14e-21!102;UBERON:0002346!6.62e-20!71;UBERON:0003075!6.62e-20!71;UBERON:0007284!6.62e-20!71;UBERON:0000073!9.69e-18!75;UBERON:0001016!9.69e-18!75;UBERON:0001017!4.49e-17!73;UBERON:0005743!4.49e-17!73;UBERON:0000033!5.04e-17!63;UBERON:0001049!1.02e-14!52;UBERON:0005068!1.02e-14!52;UBERON:0006241!1.02e-14!52;UBERON:0007135!1.02e-14!52;UBERON:0000955!3.10e-14!50;UBERON:0006238!3.10e-14!50;UBERON:0002616!1.39e-13!49;UBERON:0003056!2.13e-12!49;UBERON:0002020!8.70e-12!34;UBERON:0000153!2.25e-10!94;UBERON:0007811!3.24e-10!86;UBERON:0003080!4.75e-10!40;UBERON:0002791!1.84e-09!29;UBERON:0003528!1.84e-09!29;UBERON:0001893!1.84e-09!29;UBERON:0002780!1.86e-09!39;UBERON:0001890!1.86e-09!39;UBERON:0006240!1.86e-09!39;UBERON:0000956!2.07e-08!21;UBERON:0001869!2.07e-08!21;UBERON:0000203!2.07e-08!21;UBERON:0002619!1.59e-07!17;UBERON:0002021!2.46e-07!10;UBERON:0000411!2.46e-07!10;UBERON:0001950!2.46e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.24e-17,64;UBERON:0003075,1.24e-17,64;UBERON:0007284,1.24e-17,64;UBERON:0001016,3.67e-17,75;UBERON:0004121,5.07e-17,95;UBERON:0000924,5.07e-17,95;UBERON:0006601,5.07e-17,95;UBERON:0001017,1.80e-16,73;UBERON:0000073,3.94e-16,54;UBERON:0010371,2.13e-15,73;UBERON:0001049,8.92e-15,52;UBERON:0005068,8.92e-15,52;UBERON:0006241,8.92e-15,52;UBERON:0007135,8.92e-15,52;UBERON:0010314,1.45e-12,92;UBERON:0000955,2.56e-12,47;UBERON:0006238,2.56e-12,47;UBERON:0003056,3.71e-12,49;UBERON:0002020,9.64e-12,34;UBERON:0002616,1.14e-11,46;UBERON:0003080,1.07e-09,40;UBERON:0003528,2.60e-09,29;UBERON:0002791,2.60e-09,29;UBERON:0001893,2.60e-09,29;UBERON:0002780,4.34e-09,39;UBERON:0001890,4.34e-09,39;UBERON:0006240,4.34e-09,39;UBERON:0000956,1.21e-08,21;UBERON:0001869,1.21e-08,21;UBERON:0000203,1.21e-08,21;UBERON:0002619,1.06e-07,17;UBERON:0002021,1.08e-07,10;UBERON:0000411,1.08e-07,10;UBERON:0001950,1.08e-07,10 | |||
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| |||
|short_description=p1@Kcnab3 | |||
}} |
Revision as of 09:42, 6 August 2015
Short description: | p1@Kcnab3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Kcnab3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 26bp_to_ENSMUST00000018614, NM_010599, uc007jps.1_5end |
EntrezGene: | 16499 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.05e-07 | 23 |
neuroblast (sensu Vertebrata) | 2.05e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.24e-17 | 64 |
neural plate | 1.24e-17 | 64 |
presumptive neural plate | 1.24e-17 | 64 |
nervous system | 3.67e-17 | 75 |
ectoderm-derived structure | 5.07e-17 | 95 |
ectoderm | 5.07e-17 | 95 |
presumptive ectoderm | 5.07e-17 | 95 |
central nervous system | 1.80e-16 | 73 |
regional part of nervous system | 3.94e-16 | 54 |
ecto-epithelium | 2.13e-15 | 73 |
neural tube | 8.92e-15 | 52 |
neural rod | 8.92e-15 | 52 |
future spinal cord | 8.92e-15 | 52 |
neural keel | 8.92e-15 | 52 |
structure with developmental contribution from neural crest | 1.45e-12 | 92 |
brain | 2.56e-12 | 47 |
future brain | 2.56e-12 | 47 |
pre-chordal neural plate | 3.71e-12 | 49 |
gray matter | 9.64e-12 | 34 |
regional part of brain | 1.14e-11 | 46 |
anterior neural tube | 1.07e-09 | 40 |
brain grey matter | 2.60e-09 | 29 |
regional part of telencephalon | 2.60e-09 | 29 |
telencephalon | 2.60e-09 | 29 |
regional part of forebrain | 4.34e-09 | 39 |
forebrain | 4.34e-09 | 39 |
future forebrain | 4.34e-09 | 39 |
cerebral cortex | 1.21e-08 | 21 |
cerebral hemisphere | 1.21e-08 | 21 |
pallium | 1.21e-08 | 21 |
regional part of cerebral cortex | 1.06e-07 | 17 |
occipital lobe | 1.08e-07 | 10 |
visual cortex | 1.08e-07 | 10 |
neocortex | 1.08e-07 | 10 |