FFCP PHASE2:Hg19::chr10:83634940..83634989,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:10718 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:7999 |TSSclas...") |
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| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=10718 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=7999 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=B9EGV5,P56975,B3KVG8 | ||
|association_with_transcript=-80bp_to_ENST00000372141,NM_001010848,NM_001165972,uc001kco.2,uc010qlz.1_5end | |association_with_transcript=-80bp_to_ENST00000372141,NM_001010848,NM_001165972,uc001kco.2,uc010qlz.1_5end | ||
|cluster_id=chr10:83634940..83634989,+ | |cluster_id=chr10:83634940..83634989,+ | ||
Latest revision as of 16:06, 19 September 2015
| Short description: | p1@NRG3 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_NRG3_5end |
| Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
| Association with transcript: | -80bp_to_ENST00000372141, NM_001010848, NM_001165972, uc001kco.2, uc010qlz.1_5end |
| EntrezGene: | NRG3 |
| HGNC: | 7999 |
| UniProt: | B9EGV5P56975B3KVG8 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@NRG3 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| melanocyte | 2.20e-10 | 10 |
| melanoblast | 2.20e-10 | 10 |
| pigment cell | 4.31e-10 | 14 |
| endothelial cell of vascular tree | 2.13e-07 | 24 |
Showing 1 to 4 of 4 entries
| Ontology term | p-value | n |
|---|---|---|
| neural tube | 3.50e-70 | 56 |
| neural rod | 3.50e-70 | 56 |
| future spinal cord | 3.50e-70 | 56 |
| neural keel | 3.50e-70 | 56 |
| regional part of nervous system | 1.66e-65 | 53 |
| regional part of brain | 1.66e-65 | 53 |
| central nervous system | 6.48e-65 | 81 |
| nervous system | 4.98e-64 | 89 |
| neural plate | 4.96e-59 | 82 |
| presumptive neural plate | 4.96e-59 | 82 |
Showing 1 to 10 of 66 entries
