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{{Fontsize|3|Transcription factors with enriched expression in this sample}}{{nowrap|{{#info: Ranked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. }}}}
{{Fontsize|3|Transcription factors with enriched expression in this sample}}{{nowrap|{{#info: Ranked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. }}}}
<html><!-- tf enrich table: start-->
<script type="text/javascript">
var species="</html>{{#var:species_temp}}<html>";
var mm_data = new Array();
var enrichment_scores_data = "</html>{{{expression_enrichment_score}}}<html>";
var sub_content = enrichment_scores_data.split(";;");
$(document).ready(function() {
for(i=0;i<sub_content.length;i++){
var temp =sub_content[i];
if(temp != null){
if(temp.length>2){
var sub_sub_content=sub_content[i].split("!");
var built="FFCP_PHASE1:"+species+"::"+sub_sub_content[0];
mm_data.push(sub_sub_content);
}
}
}
/*"sDom": '<"top"i>rt<"bottom"flp><"clear">' */
    $('#ffcp_tf_enrichscore').DataTable( {
        data: mm_data,
        dom: 'Blfrtip',
        lengthMenu: [[10, 50, -1], [10, 50, "All"]],
        buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
        columnDefs: [{ targets: [1], visible: false}],
        columns: [
            { title: "CAGE peaks" ,
              render: function ( data, type, row, meta ) {
                var peak_loc = row[0];
                var peak_name = row[1];
return "<a href=\"/5/sstar/"+"FFCP_PHASE1:"+species+"::"+peak_loc +"\">"+peak_name+"</a>";
              }
            },
            { title: "Log10(Relative expression over median)" },
            { title: "TPM" },
            { title: "TF." }
        ],
        order: [[ 2, 'desc' ]]
    } );
});
</script>
<span id="tf_enrich_table_export_tool"></span>
<table cellpadding="0" cellspacing="0" border="0" id="ffcp_tf_enrichscore" class="stripe cell-border order-column compact"></table>
</html>
}}
}}
{{#vardefine:isHumanOrMouse|{{#switch:{{{sample_species}}}|Human (Homo sapiens)=1|Mouse (Mus musculus)=1|0}}}}
{{#vardefine:isHumanOrMouse|{{#switch:{{{sample_species}}}|Human (Homo sapiens)=1|Mouse (Mus musculus)=1|0}}}}
{{#ifeq:{{#var:isHumanOrMouse}}|1|<br><br>{{Fontsize|3|Co-expression clusters with enriched expression in this sample}}{{#info:Ranked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>[http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters data]}}<html><script type="text/javascript">
{{#ifeq:{{#var:isHumanOrMouse}}|1|<br><br>{{Fontsize|3|Co-expression clusters with enriched expression in this sample}}{{#info:Ranked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>[http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters data]}}{{#switch:{{{sample_species}}}|Human (Homo sapiens)={{#arraymap:{{#explode:{{{profile_hcage}}}|,|0}}|&|$|{{#ask:[[Coexpression_dpi_cluster_scores_median_ffid::{{PAGENAME}}]][[Coexpression_dpi_cluster_scores_median_cnhs::{{#replace:$|CNhs|}}]]|?Coexpression_dpi_cluster_scores_median_value|intro=<table class="relative-exp-of-coexp stripe cell-border order-column compact"><html><thead></html><tr><th>Coexpression cluster</th><th>score</th></tr><html></thead><tbody></html>|outro=<html></tbody></html></table>|link=none|format=template|template=Coexpression_dpi_cluster_scores_median_in_ffsample|limit=5000|searchlabel=|default=No results for this sample}}
$(document).ready(function() {
 
    if($('.relative-exp-of-coexp')[0]){
        $('.relative-exp-of-coexp').DataTable({
          dom: 'Blfrtip',
          buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
          lengthMenu: [[10, 50, -1], [10, 50, "All"]],
          order: [[ 1, 'desc' ]]
        });
}
});
</script></html>{{#switch:{{{sample_species}}}|Human (Homo sapiens)={{#arraymap:{{#explode:{{{profile_hcage}}}|,|0}}|&|$|{{#ask:[[Coexpression_dpi_cluster_scores_median_ffid::{{PAGENAME}}]][[Coexpression_dpi_cluster_scores_median_cnhs::{{#replace:$|CNhs|}}]]|?Coexpression_dpi_cluster_scores_median_value|intro=<table class="relative-exp-of-coexp stripe cell-border order-column compact"><html><thead></html><tr><th>Coexpression cluster</th><th>score</th></tr><html></thead><tbody></html>|outro=<html></tbody></html></table>|link=none|format=template|template=Coexpression_dpi_cluster_scores_median_in_ffsample|limit=5000|searchlabel=|default=No results for this sample}}
|<br><br>}}
|<br><br>}}
|Mouse (Mus musculus)=
|Mouse (Mus musculus)=
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<br><br>link to dataset.<br>[http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Repeat_expression data]}}}}
<br><br>link to dataset.<br>[http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Repeat_expression data]}}}}
{{#if: {{#pos:{{{repeat_enrich_byfamily}}}|,}} |
{{#if: {{#pos:{{{repeat_enrich_byfamily}}}|,}} |
<html><script type="text/javascript">
$(document).ready(function() {
var repeat_enrich_byfamily_data = [];
var repeat_enrich_byfamily_repnames = [
</html>{{#switch:{{{sample_species}}}|Human (Homo sapiens)=<html>
'Alu','Alu,Alu','Alu,ERVL-MaLR','Alu,L1','Alu,L2','Alu,Low_complexity','Alu,MIR','Alu,hAT-Charlie','Alu,hAT-Tip100','Alu,rRNA','Alu,snRNA','CR1','CR1,CR1','DNA','DNA?','Deu','ERV','ERV1','ERV1,ERV1','ERV1,ERVL','ERV1,ERVL-MaLR','ERV1,MIR','ERV1,snRNA','ERVK','ERVK,rRNA','ERVL','ERVL,ERV1','ERVL,ERVL','ERVL,ERVL-MaLR','ERVL,hAT-Charlie','ERVL,snRNA','ERVL-MaLR','ERVL-MaLR,ERVL-MaLR','ERVL-MaLR,snRNA','ERVL?','Gypsy','Gypsy?','Helitron','L1','L1,ERV1','L1,ERVL','L1,ERVL-MaLR','L1,L1','L1,TcMar-Mariner','L1,TcMar-Tigger','L1,hAT-Charlie','L1,rRNA','L1,snRNA','L1?','L2','L2,ERV1','L2,ERVL-MaLR','L2,L2','L2,MIR','L2,hAT-Blackjack','L2,hAT-Charlie','LTR','Low_complexity','Low_complexity,Alu','Low_complexity,ERV1','Low_complexity,L2','Low_complexity,Low_complexity','Low_complexity,Low_complexity,Low_complexity','Low_complexity,snRNA','MIR','MIR,ERVL-MaLR','MIR,Low_complexity','MIR,MIR','Merlin','MuDR','NA','Other','PiggyBac','PiggyBac?','RNA','RNA,MIR','RTE','RTE,CR1','RTE-BovB','SINE','SINE?','Satellite','Satellite,ERVL','Simple_repeat','Simple_repeat,Alu','Simple_repeat,ERV1','Simple_repeat,ERVL','Simple_repeat,ERVL-MaLR','Simple_repeat,L1','Simple_repeat,L2','Simple_repeat,Low_complexity','Simple_repeat,Low_complexity,Low_complexity','Simple_repeat,MIR','Simple_repeat,Other','Simple_repeat,Simple_repeat','Simple_repeat,Simple_repeat,Low_complexity','Simple_repeat,Simple_repeat,Simple_repeat','Simple_repeat,TcMar-Tigger','Simple_repeat,Unknown','Simple_repeat,hAT-Charlie','Simple_repeat,hAT-Tip100','Simple_repeat,scRNA','Simple_repeat,snRNA','TcMar','TcMar-Mariner','TcMar-Tc2','TcMar-Tc2,ERV1','TcMar-Tigger','TcMar-Tigger,TcMar-Tigger','TcMar-Tigger,snRNA','TcMar?','Unknown','Unknown?','acro','centr','hAT','hAT-Blackjack','hAT-Charlie','hAT-Charlie,ERVL-MaLR','hAT-Charlie,MIR','hAT-Charlie,hAT-Charlie','hAT-Charlie,snRNA','hAT-Tip100','hAT?','rRNA','rRNA,rRNA','scRNA','scRNA,L1','snRNA','srpRNA','tRNA','telo'
</html>|Mouse (Mus musculus)=<html>
'AcHobo','Alu','Alu,B4','Alu,B4,ERVL','Alu,ERVK','Alu,ERVL','Alu,L1','B2','B2,B4','B4','B4,Alu','B4,Low_complexity','CR1','ERV1','ERV1,ERVK','ERVK','ERVK,ERVK','ERVL','ERVL,Alu','ERVL,ERVK','ERVL,MaLR','ERVL?','Genie?','Gypsy','Gypsy?','Helitron','ID','ID,Satellite','L1','L1,ERVK','L1,L1','L1,snRNA','L1,tRNA','L2','L2,ERV1','L2,MaLR','LTR','Low_complexity','Low_complexity,Alu','Low_complexity,Low_complexity','Low_complexity,Low_complexity,Low_complexity','Low_complexity,MIR','Low_complexity,Tip100','Low_complexity,snRNA','MER1_type','MER1_type,B4','MER1_type?','MER2_type','MIR','MIR,MIR','MIR,MaLR','MaLR','MaLR,Alu','MaLR,ERV1','MaLR,ERVL','MaLR,MaLR','MuDR','NA','Other','PiggyBac','RNA','RTE','SINE','Satellite','Satellite,Satellite','Simple_repeat','Simple_repeat,Alu','Simple_repeat,Alu,B4','Simple_repeat,B2','Simple_repeat,B4','Simple_repeat,ERVK','Simple_repeat,L1','Simple_repeat,Low_complexity','Simple_repeat,Low_complexity,Low_complexity','Simple_repeat,MIR','Simple_repeat,MaLR','Simple_repeat,Simple_repeat','Simple_repeat,Simple_repeat,Low_complexity','Simple_repeat,rRNA','Tc2','TcMar','Tigger','Tip100','Unknown','hAT','hAT?','rRNA','rRNA,B4','rRNA,ERVK','scRNA','scRNA,B4','scRNA,Satellite','snRNA','tRNA'
</html>}}<html>
];
var repeat_enrich_byfamily_values = [</html>{{{repeat_enrich_byfamily}}}<html>];
for(i1=0;i1<repeat_enrich_byfamily_repnames.length;i1++){
repeat_enrich_byfamily_data.push([repeat_enrich_byfamily_repnames[i1],repeat_enrich_byfamily_values[i1]]);
}
        $('#repeat_enrich_byfamily_table').DataTable({
          data: repeat_enrich_byfamily_data,
          dom: 'Blfrtip',
          buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
          lengthMenu: [[5, 50, -1], [5, 50, "All"]],
          columns: [
            { title: "Repeat family" },
            { title: "Log10(Relative expression over median)" ,
              render: function ( data, type, row, meta ) {
                var num = row[1];
                var numb = new Number(num);
return  numb.toFixed(2);
              }
            }
          ],
          order: [[ 1, 'desc' ]]
        });
});
</script>
<span id="repeat_enrich_byfamily_table_export_tool"></span>
<table id="repeat_enrich_byfamily_table" class="stripe cell-border order-column compact"></table><br>


</html>
|no result for this sample
|no result for this sample
}}
}}
Line 213: Line 119:
|<br>
|<br>
}}<br>
}}<br>
<html>
<script type="text/javascript">
$(document).ready(function() {
    if($('.jaspar_motif_pval')[0]){
        $('.jaspar_motif_pval').DataTable({
          dom: 'Blfrtip',
          buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
          lengthMenu: [[5, 50, -1], [5, 50, "All"]],
          columnDefs: [
            { targets: 0, orderable: false},
            { targets: 1, orderable: false, width: "50pt", className: "bgwhite"}
          ],
          columns: [
            { title: "Jaspar motif" },
            { title: "Logo",
              render: function ( data, type, row, meta ) {
return "<img src=\"/5/sstar/seqlogo/jaspar/" +  $(row[0]).text() + ".png\" width =\"80\" height = \"20\">";
              }
            },
            { title: "p-value",
              render: function ( data, type, row, meta ) {
                var num=row[2];
return exp_converter(num,2,"e") ;
              }
            }
          ],
          order: [[ 2, 'asc' ]]
        });
    }
});
</script>
</html>
<html>
<script type="text/javascript">
$(document).ready(function() {
    if($('.novel_motif_pval')[0]){
$('.novel_motif_pval').DataTable({
              dom: 'Blfrtip',
              buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
              lengthMenu: [[5, 50, -1], [5, 50, "All"]],
              columnDefs: [
                { targets: 0, orderable: false},
                { targets: 1, orderable: false, width: "50pt", className: "bgwhite"}
              ],
              columns: [
                { title: "Novel motif" },
                { title: "Logo",
              render: function ( data, type, row, meta ) {
return "<img src=\"/5/sstar/seqlogo/novel/" +  $(row[0]).text() + ".png\" width =\"80\" height = \"20\">";
              }
            },
            { title: "p-value",
              render: function ( data, type, row, meta ) {
                var num=row[2];
return exp_converter(num,2,"e") ;
              }
            }
          ],
          order: [[ 2, 'asc' ]]
});


    }
});
</script>
</html>


<html>
<html>
Line 436: Line 275:


$('#homer_denovo_table_export_tool').before(homer_denovo_table_tool.dom.container );
$('#homer_denovo_table_export_tool').before(homer_denovo_table_tool.dom.container );
    }
});
</script>
</html>
<html>
<script type="text/javascript">
$(document).ready(function() {
    if($('.jaspar_motif_pval')[0]){
        $('.jaspar_motif_pval').DataTable({
          dom: 'Blfrtip',
          buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
          lengthMenu: [[5, 50, -1], [5, 50, "All"]],
          columnDefs: [
            { targets: 0, orderable: false},
            { targets: 1, orderable: false, width: "50pt", className: "bgwhite"}
          ],
          columns: [
            { title: "Jaspar motif" },
            { title: "Logo",
              render: function ( data, type, row, meta ) {
return "<img src=\"/5/sstar/seqlogo/jaspar/" +  $(row[0]).text() + ".png\" width =\"80\" height = \"20\">";
              }
            },
            { title: "p-value",
              render: function ( data, type, row, meta ) {
                var num=row[2];
return exp_converter(num,2,"e") ;
              }
            }
          ],
          order: [[ 2, 'asc' ]]
        });
    }
});
</script>
</html>
<html><!-- tf enrich table: start-->
<script type="text/javascript">
var species="</html>{{#var:species_temp}}<html>";
var mm_data = new Array();
var enrichment_scores_data = "</html>{{{expression_enrichment_score}}}<html>";
var sub_content = enrichment_scores_data.split(";;");
$(document).ready(function() {
for(i=0;i<sub_content.length;i++){
var temp =sub_content[i];
if(temp != null){
if(temp.length>2){
var sub_sub_content=sub_content[i].split("!");
var built="FFCP_PHASE1:"+species+"::"+sub_sub_content[0];
mm_data.push(sub_sub_content);
}
}
}
/*"sDom": '<"top"i>rt<"bottom"flp><"clear">' */
    $('#ffcp_tf_enrichscore').DataTable( {
        data: mm_data,
        dom: 'Blfrtip',
        lengthMenu: [[10, 50, -1], [10, 50, "All"]],
        buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
        columnDefs: [{ targets: [1], visible: false}],
        columns: [
            { title: "CAGE peaks" ,
              render: function ( data, type, row, meta ) {
                var peak_loc = row[0];
                var peak_name = row[1];
return "<a href=\"/5/sstar/"+"FFCP_PHASE1:"+species+"::"+peak_loc +"\">"+peak_name+"</a>";
              }
            },
            { title: "Log10(Relative expression over median)" },
            { title: "TPM" },
            { title: "TF." }
        ],
        order: [[ 2, 'desc' ]]
    } );
});
</script>
<span id="tf_enrich_table_export_tool"></span>
<table cellpadding="0" cellspacing="0" border="0" id="ffcp_tf_enrichscore" class="stripe cell-border order-column compact"></table>
</html>
<html><script type="text/javascript">
$(document).ready(function() {
    if($('.relative-exp-of-coexp')[0]){
        $('.relative-exp-of-coexp').DataTable({
          dom: 'Blfrtip',
          buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
          lengthMenu: [[10, 50, -1], [10, 50, "All"]],
          order: [[ 1, 'desc' ]]
        });
}
});
</script></html>
<html><script type="text/javascript">
$(document).ready(function() {
var repeat_enrich_byfamily_data = [];
var repeat_enrich_byfamily_repnames = [
</html>{{#switch:{{{sample_species}}}|Human (Homo sapiens)=<html>
'Alu','Alu,Alu','Alu,ERVL-MaLR','Alu,L1','Alu,L2','Alu,Low_complexity','Alu,MIR','Alu,hAT-Charlie','Alu,hAT-Tip100','Alu,rRNA','Alu,snRNA','CR1','CR1,CR1','DNA','DNA?','Deu','ERV','ERV1','ERV1,ERV1','ERV1,ERVL','ERV1,ERVL-MaLR','ERV1,MIR','ERV1,snRNA','ERVK','ERVK,rRNA','ERVL','ERVL,ERV1','ERVL,ERVL','ERVL,ERVL-MaLR','ERVL,hAT-Charlie','ERVL,snRNA','ERVL-MaLR','ERVL-MaLR,ERVL-MaLR','ERVL-MaLR,snRNA','ERVL?','Gypsy','Gypsy?','Helitron','L1','L1,ERV1','L1,ERVL','L1,ERVL-MaLR','L1,L1','L1,TcMar-Mariner','L1,TcMar-Tigger','L1,hAT-Charlie','L1,rRNA','L1,snRNA','L1?','L2','L2,ERV1','L2,ERVL-MaLR','L2,L2','L2,MIR','L2,hAT-Blackjack','L2,hAT-Charlie','LTR','Low_complexity','Low_complexity,Alu','Low_complexity,ERV1','Low_complexity,L2','Low_complexity,Low_complexity','Low_complexity,Low_complexity,Low_complexity','Low_complexity,snRNA','MIR','MIR,ERVL-MaLR','MIR,Low_complexity','MIR,MIR','Merlin','MuDR','NA','Other','PiggyBac','PiggyBac?','RNA','RNA,MIR','RTE','RTE,CR1','RTE-BovB','SINE','SINE?','Satellite','Satellite,ERVL','Simple_repeat','Simple_repeat,Alu','Simple_repeat,ERV1','Simple_repeat,ERVL','Simple_repeat,ERVL-MaLR','Simple_repeat,L1','Simple_repeat,L2','Simple_repeat,Low_complexity','Simple_repeat,Low_complexity,Low_complexity','Simple_repeat,MIR','Simple_repeat,Other','Simple_repeat,Simple_repeat','Simple_repeat,Simple_repeat,Low_complexity','Simple_repeat,Simple_repeat,Simple_repeat','Simple_repeat,TcMar-Tigger','Simple_repeat,Unknown','Simple_repeat,hAT-Charlie','Simple_repeat,hAT-Tip100','Simple_repeat,scRNA','Simple_repeat,snRNA','TcMar','TcMar-Mariner','TcMar-Tc2','TcMar-Tc2,ERV1','TcMar-Tigger','TcMar-Tigger,TcMar-Tigger','TcMar-Tigger,snRNA','TcMar?','Unknown','Unknown?','acro','centr','hAT','hAT-Blackjack','hAT-Charlie','hAT-Charlie,ERVL-MaLR','hAT-Charlie,MIR','hAT-Charlie,hAT-Charlie','hAT-Charlie,snRNA','hAT-Tip100','hAT?','rRNA','rRNA,rRNA','scRNA','scRNA,L1','snRNA','srpRNA','tRNA','telo'
</html>|Mouse (Mus musculus)=<html>
'AcHobo','Alu','Alu,B4','Alu,B4,ERVL','Alu,ERVK','Alu,ERVL','Alu,L1','B2','B2,B4','B4','B4,Alu','B4,Low_complexity','CR1','ERV1','ERV1,ERVK','ERVK','ERVK,ERVK','ERVL','ERVL,Alu','ERVL,ERVK','ERVL,MaLR','ERVL?','Genie?','Gypsy','Gypsy?','Helitron','ID','ID,Satellite','L1','L1,ERVK','L1,L1','L1,snRNA','L1,tRNA','L2','L2,ERV1','L2,MaLR','LTR','Low_complexity','Low_complexity,Alu','Low_complexity,Low_complexity','Low_complexity,Low_complexity,Low_complexity','Low_complexity,MIR','Low_complexity,Tip100','Low_complexity,snRNA','MER1_type','MER1_type,B4','MER1_type?','MER2_type','MIR','MIR,MIR','MIR,MaLR','MaLR','MaLR,Alu','MaLR,ERV1','MaLR,ERVL','MaLR,MaLR','MuDR','NA','Other','PiggyBac','RNA','RTE','SINE','Satellite','Satellite,Satellite','Simple_repeat','Simple_repeat,Alu','Simple_repeat,Alu,B4','Simple_repeat,B2','Simple_repeat,B4','Simple_repeat,ERVK','Simple_repeat,L1','Simple_repeat,Low_complexity','Simple_repeat,Low_complexity,Low_complexity','Simple_repeat,MIR','Simple_repeat,MaLR','Simple_repeat,Simple_repeat','Simple_repeat,Simple_repeat,Low_complexity','Simple_repeat,rRNA','Tc2','TcMar','Tigger','Tip100','Unknown','hAT','hAT?','rRNA','rRNA,B4','rRNA,ERVK','scRNA','scRNA,B4','scRNA,Satellite','snRNA','tRNA'
</html>}}<html>
];
var repeat_enrich_byfamily_values = [</html>{{{repeat_enrich_byfamily}}}<html>];
for(i1=0;i1<repeat_enrich_byfamily_repnames.length;i1++){
repeat_enrich_byfamily_data.push([repeat_enrich_byfamily_repnames[i1],repeat_enrich_byfamily_values[i1]]);
}
        $('#repeat_enrich_byfamily_table').DataTable({
          data: repeat_enrich_byfamily_data,
          dom: 'Blfrtip',
          buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
          lengthMenu: [[5, 50, -1], [5, 50, "All"]],
          columns: [
            { title: "Repeat family" },
            { title: "Log10(Relative expression over median)" ,
              render: function ( data, type, row, meta ) {
                var num = row[1];
                var numb = new Number(num);
return  numb.toFixed(2);
              }
            }
          ],
          order: [[ 1, 'desc' ]]
        });
});
</script>
<span id="repeat_enrich_byfamily_table_export_tool"></span>
<table id="repeat_enrich_byfamily_table" class="stripe cell-border order-column compact"></table><br>
</html>
<html>
<script type="text/javascript">
$(document).ready(function() {
    if($('.novel_motif_pval')[0]){
$('.novel_motif_pval').DataTable({
              dom: 'Blfrtip',
              buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
              lengthMenu: [[5, 50, -1], [5, 50, "All"]],
              columnDefs: [
                { targets: 0, orderable: false},
                { targets: 1, orderable: false, width: "50pt", className: "bgwhite"}
              ],
              columns: [
                { title: "Novel motif" },
                { title: "Logo",
              render: function ( data, type, row, meta ) {
return "<img src=\"/5/sstar/seqlogo/novel/" +  $(row[0]).text() + ".png\" width =\"80\" height = \"20\">";
              }
            },
            { title: "p-value",
              render: function ( data, type, row, meta ) {
                var num=row[2];
return exp_converter(num,2,"e") ;
              }
            }
          ],
          order: [[ 2, 'asc' ]]
});
     }
     }
});
});
</script>
</script>
</html>
</html>

Revision as of 17:28, 21 May 2019


Name:{{{name}}}
Species:{{{sample_species}}}
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View:
Additional information
Sample information
strain{{{sample_strain}}}
tissue{{{sample_tissue}}}
dev stage{{{sample_dev_stage}}}
sex{{{sample_sex}}}
age{{{sample_age}}}
cell type{{{sample_cell_type}}}
cell line{{{sample_cell_line}}}
company{{{sample_company}}}
collaboration{{{sample_collaboration}}}
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number{{{rna_lot_number}}}
catalog number{{{rna_catalog_number}}}
sample type{{{rna_sample_type}}}
extraction protocol (Details){{{rna_extraction_protocol}}}



FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
{{{is_a}}}

part_of relathionship
{{{part_of}}}

has_quality relathionship
{{{has_quality}}}

Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
NA

DOID: Disease
NA

UBERON: Anatomy
NA

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA


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