Personal tools

MacroAPE 1083:5-CGTCACTMGT

From FANTOM5_SSTAR

Revision as of 13:37, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: 5-CGTCACTMGT,CNhs13229,BestGuess:PAX2_si_HM09(0.744606635441944),T:780.0(31.77%),B:9602.9(20.73%),P:1e-36

Motif matrix
POACGT
174.88377.52148.98179.4
225.741.56719.1633.54
30.7814.0417.16748.02
445.24546.0164.5824.18
5685.622.3445.2446.8
626.52485.16147.42120.9
727.381.964.74606.06
8304.98312.7862.4100.62
929.6425.74588.12136.5
10170.8288.14108.42412.62

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

Pax2#MA0067.100.002056240.9787710.8811198CGTCACTCGTAGTCACGG+
CREB1#MA0018.120.002077860.9890610.88111910CGTCACTCGTGACGTCACCAGG-
ABF1#MA0265.110.002776631.321680.88111910CGTCACTCGTATATCACTTTATACGA-
bZIP910#MA0096.110.008033483.8239416CGTCACTCGTACGTCAT-
NFE2L1::MafG#MA0089.1-10.01312156.2458216CGTCACTCGTGTCATG-
CST6#MA0286.130.01419686.7576916CGTCACTCGTTTACGTCAT-
TGA1A#MA0129.120.01728178.226115CGTCACTCGTTACGTCA+