Personal tools

MacroAPE 1083:CTCCTGTTCC,motif443

From FANTOM5_SSTAR

Revision as of 14:18, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: CTCCTGTTCC,motif443,CNhs11774,T:2251.0(46.04%),B:27483.7(37.60%),P:1e-32

Motif matrix
POACGT
1108.0481816.55799.044227.351
2101.295117.05287.7891944.864
3137.3111827.812247.6138.267
467.531922.354114.801146.315
5155.319189.08463.0281843.569
6162.072184.5821562.194342.152
7101.295243.108279.1241627.473
8112.55177.829175.5781785.043
9150.8171789.54594.542216.096
10103.5461897.59372.032177.829

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

Myf#MA0055.100.009365874.45815110CTCCTGTTCCCAGCAGCTGCTG-
Ar#MA0007.180.01198625.70542110CTCCTGTTCCATAAGAACACCCTGTACCCGCC+
sna#MA0086.100.01299186.1840916CTCCTGTTCCCACCTG-
lin-14#MA0261.1-30.01364536.4951416CTCCTGTTCCGTGTTC-
HSF1#MA0319.1-40.0144076.8577516CTCCTGTTCCTGTTCCAT-
STAT1#MA0137.140.01480017.04485110CTCCTGTTCCCAGTTTCATTTTCC-
GAL4#MA0299.120.01679557.99465110CTCCTGTTCCGAGTACTGTTCCCCG-
odd#MA0454.130.01680688.0000418CTCCTGTTCCCTGCTACTGTT-
ZEB1#MA0103.100.01974899.400516CTCCTGTTCCCACCTG+
ASH1#MA0276.1-20.01987159.4588518CTCCTGTTCCCCCGATCCGG-
LEU3#MA0324.1-20.01987159.4588518CTCCTGTTCCCCGTTACCGG+