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MCL coexpression mm9:136

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:61990161..61990183,-p2@Srgn
Mm9::chr11:61298940..61298954,+p1@Mfap4
Mm9::chr11:61299205..61299243,+p@chr11:61299205..61299243
+
Mm9::chr11:61299249..61299278,+p@chr11:61299249..61299278
+
Mm9::chr11:61299527..61299541,+p@chr11:61299527..61299541
+
Mm9::chr11:61299609..61299632,+p@chr11:61299609..61299632
+
Mm9::chr11:61300573..61300615,+p@chr11:61300573..61300615
+
Mm9::chr11:61301246..61301258,+p@chr11:61301246..61301258
+
Mm9::chr11:61301398..61301411,+p@chr11:61301398..61301411
+
Mm9::chr11:61301454..61301465,+p@chr11:61301454..61301465
+
Mm9::chr11:61301499..61301513,+p@chr11:61301499..61301513
+
Mm9::chr11:61301518..61301533,+p@chr11:61301518..61301533
+
Mm9::chr11:61301545..61301573,+p@chr11:61301545..61301573
+
Mm9::chr11:61301617..61301632,-p@chr11:61301617..61301632
-
Mm9::chr11:61301648..61301666,+p@chr11:61301648..61301666
+
Mm9::chr11:61301720..61301779,-p@chr11:61301720..61301779
-
Mm9::chr11:61301788..61301807,+p@chr11:61301788..61301807
+
Mm9::chr11:61301793..61301819,-p@chr11:61301793..61301819
-
Mm9::chr11:61301839..61301851,+p@chr11:61301839..61301851
+
Mm9::chr11:61301887..61301922,+p@chr11:61301887..61301922
+
Mm9::chr11:61301950..61301962,+p@chr11:61301950..61301962
+
Mm9::chr11:61301984..61302017,+p@chr11:61301984..61302017
+
Mm9::chr11:61302171..61302175,+p@chr11:61302171..61302175
+
Mm9::chr11:85589157..85589190,-p1@ENSMUST00000134305
Mm9::chr11:85699562..85699575,+p6@Tbx4
Mm9::chr11:85699862..85699920,+p1@Tbx4
Mm9::chr11:85703335..85703350,+p4@Tbx4
Mm9::chr11:85703483..85703508,+p2@Tbx4
Mm9::chr11:96194131..96194154,+p@chr11:96194131..96194154
+
Mm9::chr12:36212286..36212292,-p@chr12:36212286..36212292
-
Mm9::chr12:85467191..85467196,+p@chr12:85467191..85467196
+
Mm9::chr13:63499560..63499569,-p12@Fancc
Mm9::chr13:63499589..63499607,-p3@Fancc
Mm9::chr13:95993406..95993421,-p5@Pde8b
Mm9::chr14:120879424..120879430,+p@chr14:120879424..120879430
+
Mm9::chr14:120880079..120880082,+p@chr14:120880079..120880082
+
Mm9::chr14:28870576..28870579,+p@chr14:28870576..28870579
+
Mm9::chr14:84844821..84844839,+p@chr14:84844821..84844839
+
Mm9::chr16:29998327..29998355,-p@chr16:29998327..29998355
-
Mm9::chr16:48842721..48842744,+p@chr16:48842721..48842744
+
Mm9::chr17:33661115..33661176,+p1@Adamts10
Mm9::chr19:16037012..16037024,-p@chr19:16037012..16037024
-
Mm9::chr19:5741300..5741325,+p@chr19:5741300..5741325
+
Mm9::chr1:10983388..10983412,+p3@Prex2
Mm9::chr1:10983446..10983456,+p7@Prex2
Mm9::chr1:166726854..166726865,+p4@Dpt
Mm9::chr1:166726866..166726877,+p@chr1:166726866..166726877
+
Mm9::chr1:44275750..44275796,-p1@4832428D23Rik
Mm9::chr1:44275797..44275806,-p2@4832428D23Rik
Mm9::chr1:80210506..80210524,-p2@Fam124b
Mm9::chr2:126950686..126950702,-p@chr2:126950686..126950702
-
Mm9::chr2:17653200..17653216,-p11@Nebl
Mm9::chr2:17653387..17653392,-p9@Nebl
Mm9::chr2:66512907..66512912,-p@chr2:66512907..66512912
-
Mm9::chr2:66520757..66520762,-p@chr2:66520757..66520762
-
Mm9::chr2:66524237..66524246,-p@chr2:66524237..66524246
-
Mm9::chr2:66568248..66568250,-p@chr2:66568248..66568250
-
Mm9::chr2:66622960..66622977,-p1@Scn7a
Mm9::chr2:66623294..66623305,-p5@Scn7a
Mm9::chr2:7004606..7004622,-p@chr2:7004606..7004622
-
Mm9::chr3:122432788..122432812,+p13@Pde5a
Mm9::chr3:122432836..122432847,+p16@Pde5a
Mm9::chr3:122559344..122559358,+p@chr3:122559344..122559358
+
Mm9::chr4:123289346..123289350,-p@chr4:123289346..123289350
-
Mm9::chr4:123290944..123290994,-p@chr4:123290944..123290994
-
Mm9::chr4:123290999..123291011,-p@chr4:123290999..123291011
-
Mm9::chr4:123291018..123291042,-p@chr4:123291018..123291042
-
Mm9::chr4:123291044..123291056,-p@chr4:123291044..123291056
-
Mm9::chr4:123291064..123291076,-p@chr4:123291064..123291076
-
Mm9::chr5:67289716..67289733,+p5@Limch1
Mm9::chr6:65621597..65621612,+p1@A930038C07Rik
Mm9::chr6:65621750..65621764,+p2@A930038C07Rik
Mm9::chr7:118006761..118006767,-p3@Lyve1
Mm9::chr8:123607066..123607091,-p2@1110050K14Rik
Mm9::chr8:80194824..80194828,-p@chr8:80194824..80194828
-
Mm9::chr8:94878479..94878503,-p@chr8:94878479..94878503
-
Mm9::chr9:110959404..110959419,-p9@Ccrl2
Mm9::chr9:8544199..8544225,+p1@Trpc6
Mm9::chr9:8544227..8544258,+p2@Trpc6
Mm9::chrX:103241190..103241203,+p@chrX:103241190..103241203
+
Mm9::chrX:132585746..132585757,-p@chrX:132585746..132585757
-
Mm9::chrX:137198835..137198865,+p3@Mid2
Mm9::chrX:53984956..53984975,+p1@Fhl1
Mm9::chrX:53987988..53987994,+p@chrX:53987988..53987994
+
Mm9::chrX:7848806..7848916,+p2@Slc38a5


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:00041143',5'-cyclic-nucleotide phosphodiesterase activity0.015339944118775
GO:0004112cyclic-nucleotide phosphodiesterase activity0.015339944118775
GO:0033371T cell secretory granule organization and biogenesis0.015339944118775
GO:0006026aminoglycan catabolic process0.015339944118775
GO:0033377maintenance of protein localization in T cell secretory granule0.015339944118775
GO:0033365protein localization in organelle0.015339944118775
GO:0033370maintenance of protein localization in mast cell secretory granule0.015339944118775
GO:0033367protein localization in mast cell secretory granule0.015339944118775
GO:0033364mast cell secretory granule organization and biogenesis0.015339944118775
GO:0006027glycosaminoglycan catabolic process0.015339944118775
GO:0042629mast cell granule0.015339944118775
GO:0033368protease localization in mast cell secretory granule0.015339944118775
GO:0033363secretory granule organization and biogenesis0.015339944118775
GO:0033366protein localization in secretory granule0.015339944118775
GO:0033374protein localization in T cell secretory granule0.015339944118775
GO:0033382maintenance of granzyme B localization in T cell secretory granule0.015339944118775
GO:0033375protease localization in T cell secretory granule0.015339944118775
GO:0033373maintenance of protease localization in mast cell secretory granule0.015339944118775
GO:0033380granzyme B localization in T cell secretory granule0.015339944118775
GO:0033379maintenance of protease localization in T cell secretory granule0.015339944118775
GO:0046069cGMP catabolic process0.015339944118775
GO:0015279store-operated calcium channel activity0.0290970872203959
GO:0008081phosphoric diester hydrolase activity0.0290970872203959
GO:0050709negative regulation of protein secretion0.0324652120323855
GO:0035110leg morphogenesis0.0324652120323855
GO:0050710negative regulation of cytokine secretion0.0324652120323855
GO:0019430removal of superoxide radicals0.0324652120323855
GO:0009214cyclic nucleotide catabolic process0.0324652120323855
GO:0005578proteinaceous extracellular matrix0.0324652120323855
GO:0022610biological adhesion0.0324652120323855
GO:0007155cell adhesion0.0324652120323855
GO:0043169cation binding0.0337402888933625
GO:0001527microfibril0.0472748244597687
GO:0050707regulation of cytokine secretion0.0472748244597687



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
lung1.69e-1414
respiratory tube1.69e-1414
respiration organ1.69e-1414
pair of lungs1.69e-1414
lung primordium1.69e-1414
lung bud1.69e-1414
epithelial bud6.78e-1117
thoracic cavity element6.78e-1117
thoracic segment organ6.78e-1117
thoracic cavity6.78e-1117
thoracic segment of trunk6.78e-1117
respiratory primordium6.78e-1117
endoderm of foregut6.78e-1117
epithelial fold1.99e-0820


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.00613473
MA0004.10.00335193
MA0006.10.00541326
MA0007.10.0167071
MA0009.10.104878
MA0014.10.00518006
MA0017.11.67957
MA0019.10.356172
MA0024.10.607151
MA0025.10.66281
MA0027.11.49755
MA0028.10.0494763
MA0029.10.564371
MA0030.11.45386
MA0031.11.82941
MA0038.10.636469
MA0040.10.110618
MA0041.11.04863
MA0042.10.725855
MA0043.10.908449
MA0046.10.121766
MA0048.10.0462798
MA0050.10.198059
MA0051.10.0824209
MA0052.10.114396
MA0055.10.12148
MA0056.10
MA0057.10.175618
MA0058.10.00511538
MA0059.10.00628366
MA0060.10.0200438
MA0061.10.205272
MA0063.10
MA0066.10.185154
MA0067.10.31176
MA0068.11.16988
MA0069.10.114556
MA0070.10.355365
MA0071.10.0305123
MA0072.10.106122
MA0073.10.000520852
MA0074.10.503374
MA0076.10.0362345
MA0077.10.0964946
MA0078.10.103156
MA0081.10.44105
MA0083.10.152699
MA0084.10.575047
MA0087.10.810121
MA0088.10.436142
MA0089.10
MA0090.10.756167
MA0091.11.65958
MA0092.12.43619
MA0093.10.00177928
MA0095.10
MA0098.10
MA0100.10.00958774
MA0101.10.249455
MA0103.10.362664
MA0105.10.183445
MA0106.13.70692
MA0107.10.220086
MA0108.20.393807
MA0109.10
MA0111.10.582934
MA0113.10.0203862
MA0114.11.40724
MA0115.10.154654
MA0116.10.0170786
MA0117.10.137503
MA0119.10.58155
MA0122.10.147942
MA0124.10.752756
MA0125.10.224609
MA0130.10
MA0131.10.0384813
MA0132.10
MA0133.10
MA0135.10.1735
MA0136.10.166822
MA0139.10.0736671
MA0140.10.274325
MA0141.10.000489181
MA0142.10.221829
MA0143.10.247282
MA0144.10.00167064
MA0145.10.337166
MA0146.10.00117061
MA0147.10.0004452
MA0148.11.32315
MA0149.10.0287178
MA0062.20.00683465
MA0035.20.484664
MA0039.20.000647332
MA0138.20.144763
MA0002.21.23955
MA0137.20.0146466
MA0104.26.93355e-05
MA0047.21.72372
MA0112.20.00419783
MA0065.21.82289
MA0150.10.126921
MA0151.10
MA0152.10.197528
MA0153.10.539429
MA0154.11.45682
MA0155.10.464773
MA0156.10.080019
MA0157.11.14342
MA0158.10
MA0159.10.0261721
MA0160.10.0766123
MA0161.10
MA0162.10.000230593
MA0163.10.0666803
MA0164.10.167226
MA0080.20.500153
MA0018.20.178236
MA0099.20.32646
MA0079.21.20603e-06
MA0102.20.620824
MA0258.10.02732
MA0259.10.0173032
MA0442.10
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