NonredundantMotifs:205

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :known205
• db :HOCOMOCO
• Id :HMGA2_f1
• name  :
• score :0.021276924316197637
  
• External refs:

EntrezGene:8091
UniProt:8091

• Internal refs:

EntrezGene:8091

Motif matrix

P0 A C G T 1 71.751724137931 1.2413793103448247 1.2413793103448247 1.2413793103448247 2 54.62068965517242 0.0 0.0 20.85517241379316 3 11.917241379310322 0.0 0.0 63.55862068965518 4 44.6896551724138 0.0 0.0 30.78620689655177 5 39.72413793103453 1.9862068965517228 0.9931034482758614 32.77241379310348 6 12.910344827586252 20.85517241379316 8.93793103448276 32.77241379310348 7 0.0 41.71034482758624 29.793103448275918 3.972413793103453 8 1.9862068965517228 24.827586206896573 46.67586206896551 1.9862068965517228 9 0.0 37.73793103448283 32.77241379310348 4.965517241379315 10 1.9862068965517228 31.779310344827625 40.71724137931039 0.9931034482758614 11 71.50344827586208 0.0 2.9793103448275917 0.9931034482758614 12 59.58620689655176 0.9931034482758614 0.0 14.896551724137959 13 1.9862068965517228 0.9931034482758614 0.0 72.49655172413793 14 59.58620689655176 0.0 0.9931034482758614 14.896551724137959 15 1.4896551724137959 1.4896551724137959 1.4896551724137959 71.00689655172415