NonredundantMotifs:22

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :known22
• db :UNIPROBE
• Id :Rara_secondary
• name :SCI09
• score :0.868119759774104
  
• External refs:

EntrezGene:5914
UniProt:5914

• Internal refs:

EntrezGene:5914

Motif matrix

P0 A C G T 1 0.452790685382596 0.238472502367781 0.150607963167503 0.15812884908212 2 0.126444202625904 0.0940122740755787 0.487075813557476 0.292467709741041 3 0.434627435132116 0.239256199886739 0.156125493838153 0.169990871142993 4 0.155277836462267 0.149228013587864 0.515564824923915 0.179929325025954 5 0.0222658998560708 0.469313799049504 0.0592401242927527 0.449180176801673 6 0.0150357867265764 0.363659944262162 0.45159396411303 0.169710304898231 7 0.0451886000259906 0.0997597759314082 0.821515705127828 0.0335359189147732 8 0.00776280084908986 0.00985731701193892 0.907047486281808 0.0753323958571634 9 0.0134527602102177 0.00395188759757316 0.903170443044843 0.0794249091473659 10 0.0407142250402703 0.0273708009069133 0.0279965049673275 0.903918469085489 11 0.017022968201438 0.852074842896406 0.0396557342304163 0.0912464546717396 12 0.801114499925933 0.00439081139945169 0.164886133951546 0.0296085547230698 13 0.394694584614395 0.235752140477909 0.182579862336018 0.186973412571678 14 0.0876540913824464 0.156911410725238 0.450590709112785 0.304843788779531 15 0.118927067859795 0.222730319934294 0.284209582007194 0.374133030198716 16 0.308787276712257 0.296358210904117 0.19786822363726 0.196986288746366