NonredundantMotifs:11

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :known11
• db :JASPAR
• Id :MA0065.2
• name :PPARG::RXRA
• score :0.40344014069097944
  
• External refs:

EntrezGene:5468
UniProt:5468

EntrezGene:6256
UniProt:6256

• Internal refs:

EntrezGene:5468

EntrezGene:6256

Motif matrix
P0 A C G T 1 94 317 320 126 2 101 166 127 464 3 390 23 368 79 4 100 3 671 87 5 139 15 674 34 6 145 129 395 193 7 71 547 179 66 8 819 21 15 8 9 522 48 270 23 10 713 5 137 9 11 82 2 767 12 12 41 9 693 120 13 22 99 263 479 14 54 555 144 109 15 676 58 47 81