Browse NonredundantMotifs

Analysis information : <br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013 <br> Collection Name: Non-redundant known motifs <br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.<br>data source

Representative Motifs General View (PieChart)

motif db	motif id	motif name	score	Logo
UNIPROBE	Lhx8_2247.2	CELL08	0.145	NonredundantMotifs:1
SWISSREGULON	ZEB1.p2	ZEB1	0.811	NonredundantMotifs:10
UNIPROBE	Sp4_secondary	SCI09	1.18	NonredundantMotifs:100
UNIPROBE	Cphx_3484.1	CELL08	0.0662	NonredundantMotifs:101
UNIPROBE	Tcfap2c_secondary	SCI09	0.931	NonredundantMotifs:102
HOCOMOCO	TLX1_f1		0.119	NonredundantMotifs:103
SWISSREGULON	CDX1,2,4.p2	CDX1,2,4	0.0968	NonredundantMotifs:104
SWISSREGULON	ZBTB6.p2	ZBTB6	0.955	NonredundantMotifs:105
UNIPROBE	E2F2_secondary	SCI09	1.877	NonredundantMotifs:106
HOCOMOCO	FOXM1_f1		0.0817	NonredundantMotifs:107
SWISSREGULON	SPZ1.p2	SPZ1	1.293	NonredundantMotifs:108
HOCOMOCO	SPZ1_f1		0.815	NonredundantMotifs:109
JASPAR	MA0065.2	PPARG::RXRA	0.403	NonredundantMotifs:11
UNIPROBE	Gata6_secondary	SCI09	0.906	NonredundantMotifs:110
HOMER	PBX1_MCF7-PBX1-ChIP-Seq(GSE28007)		0.0635	NonredundantMotifs:111
HOCOMOCO	SMAD1_si		0.209	NonredundantMotifs:112
UNIPROBE	Rhox11_2205.1	CELL08	0.0179	NonredundantMotifs:113
HOMER	ZBTB33_GM12878-ZBTB33-ChIP-Seq		0.414	NonredundantMotifs:114
HOCOMOCO	MAZ_f1		4.357	NonredundantMotifs:115
SWISSREGULON	CDC5L.p2	CDC5L	0.0474	NonredundantMotifs:116
HOCOMOCO	ZBT7B_si		4.964	NonredundantMotifs:117
SWISSREGULON	POU6F1.p2	POU6F1	0.0332	NonredundantMotifs:118
HOCOMOCO	KLF15_f1		4.5	NonredundantMotifs:119
HOCOMOCO	SP3_f1		5.013	NonredundantMotifs:12
HOCOMOCO	MBD2_si		2.962	NonredundantMotifs:120
UNIPROBE	Gcm1_primary	SCI09	0.518	NonredundantMotifs:121
SWISSREGULON	EWSR1-FLI1.p2	EWSR1-FLI1	0.0505	NonredundantMotifs:122
SWISSREGULON	MSX1,2.p2	MSX1,2	0.0479	NonredundantMotifs:123
SWISSREGULON	ARID5B.p2	ARID5B	0.0544	NonredundantMotifs:124
UNIPROBE	Osr1_secondary	SCI09	0.0379	NonredundantMotifs:125
UNIPROBE	Osr1_primary	SCI09	0.0404	NonredundantMotifs:126
UNIPROBE	Sp100_primary	SCI09	0.0332	NonredundantMotifs:127
HOMER	ZNF263_K562-Znf263-ChIP-Seq		1.154	NonredundantMotifs:128
SWISSREGULON	EN1,2.p2	EN1,2	0.0733	NonredundantMotifs:129
HOMER	STAT1_HelaS3-STAT1-ChIP-Seq		0.147	NonredundantMotifs:13
HOCOMOCO	SOX17_f2		0.04	NonredundantMotifs:130
UNIPROBE	Isgf3g_secondary	SCI09	0.0255	NonredundantMotifs:131
UNIPROBE	Sox7_secondary	SCI09	0.0146	NonredundantMotifs:132
UNIPROBE	Zbtb12_secondary	SCI09	0.06	NonredundantMotifs:133
HOCOMOCO	FUBP1_f1		0.218	NonredundantMotifs:134
HOMER	DMC1_Testis-DMC1-ChIP-Seq		0.0436	NonredundantMotifs:135
SWISSREGULON	HMX1.p2	HMX1	0.123	NonredundantMotifs:136
HOCOMOCO	IRF5_f1		0.116	NonredundantMotifs:137
HOCOMOCO	EOMES_f1		0.012	NonredundantMotifs:138
UNIPROBE	IRC900814_secondary	SCI09	0.0303	NonredundantMotifs:139
HOMER	CDX2_mES-Cdx2-ChIP-Seq		0.101	NonredundantMotifs:14
UNIPROBE	Zfp187_primary	SCI09	0.0513	NonredundantMotifs:140
HOCOMOCO	HXD10_f1		0.0675	NonredundantMotifs:141
SWISSREGULON	POU3F1..4.p2	POU3F1	0.0499	NonredundantMotifs:142
HOMER	EBNA1_Raji-EBNA1-ChIP-Seq(GSE30709)		0.0362	NonredundantMotifs:143
UNIPROBE	Sox15_secondary	SCI09	0.0175	NonredundantMotifs:144
UNIPROBE	Arid5a_secondary	SCI09	0.0107	NonredundantMotifs:145
UNIPROBE	Gabpa_secondary	SCI09	2.566	NonredundantMotifs:146
HOCOMOCO	ZN350_f1		2.679	NonredundantMotifs:147
UNIPROBE	Irf3_secondary	SCI09	0.341	NonredundantMotifs:148
UNIPROBE	Zbtb3_secondary	SCI09	0.0699	NonredundantMotifs:149
HOCOMOCO	STAT2_f1		0.728	NonredundantMotifs:15
SWISSREGULON	HOX(A5,B5).p2	HOX(A5,B5)	1.476	NonredundantMotifs:150
HOCOMOCO	MCR_f1		0.113	NonredundantMotifs:151
HOCOMOCO	ZBTB4!METH_f1		1.448	NonredundantMotifs:152
HOMER	TAL1_motifB	HPC7-Scl-ChIP-Seq	0.12	NonredundantMotifs:153
HOCOMOCO	MYBB_f1		0.0171	NonredundantMotifs:154
HOCOMOCO	FOXC2_f1		0.147	NonredundantMotifs:155
HOCOMOCO	EPAS1_si		0.665	NonredundantMotifs:156
UNIPROBE	Homez_1063.2	CELL08	0.0255	NonredundantMotifs:157
UNIPROBE	Sox5_secondary	SCI09	0.0172	NonredundantMotifs:158
HOCOMOCO	PURA_f1		3.94	NonredundantMotifs:159
HOCOMOCO	CEBPB_f1		0.651	NonredundantMotifs:16
HOCOMOCO	TEF_f1		0.0613	NonredundantMotifs:160
UNIPROBE	Tcf3_secondary	SCI09	0.00582	NonredundantMotifs:161
UNIPROBE	Zfp410_primary	SCI09	0.0497	NonredundantMotifs:162
HOCOMOCO	HXA7_f1		0.0141	NonredundantMotifs:163
HOCOMOCO	ZBT7A_f1		3.48	NonredundantMotifs:164
HOCOMOCO	ATF5_si		0.0903	NonredundantMotifs:165
HOCOMOCO	TEAD4_f1		0.0572	NonredundantMotifs:166
SWISSREGULON	FOXP3.p2	FOXP3	0.113	NonredundantMotifs:167
UNIPROBE	Zfp187_secondary	SCI09	0.565	NonredundantMotifs:169
JASPAR	MA0035.2	Gata1	0.207	NonredundantMotifs:17
JASPAR	MA0164.1	Nr2e3	0.0473	NonredundantMotifs:170
UNIPROBE	Zfp161_secondary	SCI09	2.983	NonredundantMotifs:171
SWISSREGULON	GZF1.p2	GZF1	0.0278	NonredundantMotifs:172
UNIPROBE	Zbtb3_primary	SCI09	0.16	NonredundantMotifs:173
HOCOMOCO	PAX2_f1		0.0597	NonredundantMotifs:174
SWISSREGULON	PAX8.p2	PAX8	0.116	NonredundantMotifs:175
UNIPROBE	Rxra_secondary	SCI09	0.0814	NonredundantMotifs:176
HOCOMOCO	NR2E3_f1		0.112	NonredundantMotifs:177
HOCOMOCO	PAX8_f1		0.143	NonredundantMotifs:178
HOMER	PRDM14_H1-PRDM14-ChIP-Seq		0.0155	NonredundantMotifs:179
SWISSREGULON	NHLH1,2.p2	NHLH1,2	1.43	NonredundantMotifs:18
SWISSREGULON	GTF2A1,2.p2	GTF2A1,2	0.07	NonredundantMotifs:180
HOCOMOCO	PAX5_si		0.0807	NonredundantMotifs:181
UNIPROBE	Arid3a_secondary	SCI09	0.00803	NonredundantMotifs:182
HOCOMOCO	PROP1_f1		0.0296	NonredundantMotifs:183
HOCOMOCO	PTF1A_f1		0.304	NonredundantMotifs:184
HOCOMOCO	TGIF1_f1		0.146	NonredundantMotifs:185
HOCOMOCO	ALX1_si		0.0736	NonredundantMotifs:186
HOCOMOCO	ZEP2_si		0.458	NonredundantMotifs:187
HOCOMOCO	HXD13_f1		0.027	NonredundantMotifs:188
HOCOMOCO	AIRE_f2		0.0501	NonredundantMotifs:189
HOCOMOCO	LEF1_f1		0.165	NonredundantMotifs:19
SWISSREGULON	AIRE.p2	AIRE	0.108	NonredundantMotifs:190
HOCOMOCO	HLTF_f1		0.064	NonredundantMotifs:191
HOCOMOCO	HESX1_f1		0.865	NonredundantMotifs:192
HOCOMOCO	BHE41_f1		2.43	NonredundantMotifs:193
SWISSREGULON	NANOG(mouse).p2	NANOG(mouse)	0.0559	NonredundantMotifs:194
UNIPROBE	Zfp105_secondary	SCI09	0.0307	NonredundantMotifs:195
HOCOMOCO	MLXPL_f1		0.909	NonredundantMotifs:196
SWISSREGULON	ZBTB16.p2	ZBTB16	0.194	NonredundantMotifs:197
HOCOMOCO	BRAC_si		0.0116	NonredundantMotifs:198
UNIPROBE	Glis2_secondary	SCI09	0.0207	NonredundantMotifs:199
JASPAR	MA0080.2	SPI1	2.116	NonredundantMotifs:2
HOCOMOCO	CREB1_f1		0.455	NonredundantMotifs:20
HOCOMOCO	ZBTB4_si		0.621	NonredundantMotifs:200
SWISSREGULON	ALX1.p2	ALX1	0.049	NonredundantMotifs:201
UNIPROBE	Sp100_secondary	SCI09	0.184	NonredundantMotifs:202
HOCOMOCO	ARI3A_do		0.0743	NonredundantMotifs:203
UNIPROBE	Arid5a_primary	SCI09	0.0566	NonredundantMotifs:204
HOCOMOCO	HMGA2_f1		0.0213	NonredundantMotifs:205
HOMER	PAX3_Rh4-PAX3	FKHR-ChIP-Seq	0.0402	NonredundantMotifs:206
UNIPROBE	Gcm1_secondary	SCI09	0.446	NonredundantMotifs:207
UNIPROBE	Atf1_secondary	SCI09	0.0583	NonredundantMotifs:208
HOCOMOCO	E2F6_f1		4.312	NonredundantMotifs:21
UNIPROBE	Rara_secondary	SCI09	0.868	NonredundantMotifs:22
JASPAR	MA0003.1	TFAP2A	3.387	NonredundantMotifs:23
HOCOMOCO	ZEB1_do		0.791	NonredundantMotifs:24
HOCOMOCO	TGIF1_si		0.25	NonredundantMotifs:25
HOCOMOCO	NKX25_f1		0.15	NonredundantMotifs:26
HOMER	RELA_GM12787-p65-ChIP-Seq		0.684	NonredundantMotifs:27
HOMER	MYBL2_Hela-BMYB-ChIPSeq(GSE27030)		0.183	NonredundantMotifs:28
HOCOMOCO	GCR_do		0.223	NonredundantMotifs:29
HOCOMOCO	HIF1A_si		0.628	NonredundantMotifs:3
HOCOMOCO	ZN219_f1		3.257	NonredundantMotifs:30
HOCOMOCO	NFYB_f1		0.742	NonredundantMotifs:31
HOMER	POU5F1_mES-Oct4-ChIP-Seq		0.161	NonredundantMotifs:32
HOCOMOCO	KLF4_f2		2.542	NonredundantMotifs:33
SWISSREGULON	NFATC1..3.p2	NFATC1	0.173	NonredundantMotifs:34
HOCOMOCO	ZIC1_f1		1.743	NonredundantMotifs:35
HOCOMOCO	RARA_f1		0.279	NonredundantMotifs:36
SWISSREGULON	NFE2L1.p2	NFE2L1	0.552	NonredundantMotifs:37
JASPAR	MA0112.2	ESR1	0.655	NonredundantMotifs:38
SWISSREGULON	RFX1..5_RFXANK_RFXAP.p2	RFX1	0.408	NonredundantMotifs:39
HOCOMOCO	FOXO1_si		0.207	NonredundantMotifs:4
HOCOMOCO	SMAD3_f1		0.0983	NonredundantMotifs:40
HOMER	RUNX1_Jurkat-RUNX1-ChIP-Seq		0.527	NonredundantMotifs:41
UNIPROBE	Sry_primary	SCI09	0.0425	NonredundantMotifs:42
SWISSREGULON	ZNF143.p2	ZNF143	0.862	NonredundantMotifs:43
SWISSREGULON	TP53.p2	TP53	1.033	NonredundantMotifs:44
SWISSREGULON	MAFB.p2	MAFB	0.368	NonredundantMotifs:45
SWISSREGULON	BPTF.p2	BPTF	1.641	NonredundantMotifs:46
HOMER	NANOG_mES-Nanog-ChIP-Seq		0.0322	NonredundantMotifs:47
JASPAR	MA0108.2	TBP	0.123	NonredundantMotifs:48
UNIPROBE	Six6_2267.5	CELL08	0.0474	NonredundantMotifs:49
SWISSREGULON	SOX5.p2	SOX5	0.146	NonredundantMotifs:5
HOCOMOCO	MEF2D_f1		0.11	NonredundantMotifs:50
SWISSREGULON	GFI1.p2	GFI1	0.279	NonredundantMotifs:51
SWISSREGULON	PAX5.p2	PAX5	4.345	NonredundantMotifs:52
HOCOMOCO	SRF_do		0.133	NonredundantMotifs:53
SWISSREGULON	POU5F1_SOX2(dimer).p2	POU5F1_SOX2(dimer)	0.086	NonredundantMotifs:54
UNIPROBE	Zic1_primary	SCI09	1.931	NonredundantMotifs:55
UNIPROBE	Irx4_2242.3	CELL08	0.0662	NonredundantMotifs:56
SWISSREGULON	NKX2-2,8.p2	NKX2-2,8	0.107	NonredundantMotifs:57
SWISSREGULON	MZF1.p2	MZF1	2.526	NonredundantMotifs:58
SWISSREGULON	NKX3-1.p2	NKX3-1	0.0865	NonredundantMotifs:59
HOCOMOCO	PPARA_f1		0.26	NonredundantMotifs:6
UNIPROBE	Bbx_primary	SCI09	0.0769	NonredundantMotifs:60
HOCOMOCO	CTCF_f2		2.277	NonredundantMotifs:61
HOCOMOCO	MTF1_f1		0.798	NonredundantMotifs:62
HOCOMOCO	HSF1_f2		0.082	NonredundantMotifs:63
HOCOMOCO	HNF1B_f1		0.199	NonredundantMotifs:64
HOCOMOCO	ATF6A_si		0.193	NonredundantMotifs:65
UNIPROBE	Hmbox1_2674.1	CELL08	0.0453	NonredundantMotifs:66
HOCOMOCO	NFIA+NFIB+NFIC+NFIX_f2		0.404	NonredundantMotifs:67
UNIPROBE	Srf_secondary	SCI09	1.693	NonredundantMotifs:68
JASPAR	MA0090.1	TEAD1	0.193	NonredundantMotifs:69
HOCOMOCO	JUN_f1		1.959	NonredundantMotifs:7
HOCOMOCO	COE1_f2		0.372	NonredundantMotifs:70
UNIPROBE	Sox8_secondary	SCI09	0.0533	NonredundantMotifs:71
HOCOMOCO	KLF8_f1		0.816	NonredundantMotifs:72
JASPAR	MA0146.1	Zfx	1.377	NonredundantMotifs:73
HOCOMOCO	SRBP1_f2		0.111	NonredundantMotifs:74
SWISSREGULON	RXRA_VDR(dimer).p2	RXRA_VDR(dimer)	0.172	NonredundantMotifs:75
HOCOMOCO	TFCP2_f1		2.03	NonredundantMotifs:76
HOCOMOCO	REST_f1		0.184	NonredundantMotifs:77
UNIPROBE	Zfp161_primary	SCI09	2.064	NonredundantMotifs:78
HOCOMOCO	ARNT2_si		2.087	NonredundantMotifs:79
HOCOMOCO	OTX2_si		0.215	NonredundantMotifs:8
UNIPROBE	Irf6_secondary	SCI09	1.59	NonredundantMotifs:80
HOCOMOCO	NRF1_f1		2.271	NonredundantMotifs:81
UNIPROBE	Zic2_secondary	SCI09	0.284	NonredundantMotifs:82
HOCOMOCO	RARA_f2		0.406	NonredundantMotifs:83
HOCOMOCO	RREB1_si		0.914	NonredundantMotifs:84
SWISSREGULON	EVI1.p2	EVI1	0.079	NonredundantMotifs:85
UNIPROBE	Hic1_secondary	SCI09	0.173	NonredundantMotifs:86
HOCOMOCO	NFIA+NFIB+NFIC+NFIX_si		0.0453	NonredundantMotifs:87
HOCOMOCO	BRCA1_f1		0.0661	NonredundantMotifs:88
SWISSREGULON	YY1.p2	YY1	0.0853	NonredundantMotifs:89
HOCOMOCO	HXB6_f1		0.127	NonredundantMotifs:9
UNIPROBE	Sox18_secondary	SCI09	0.0104	NonredundantMotifs:90
UNIPROBE	Rfx3_secondary	SCI09	0.119	NonredundantMotifs:91
UNIPROBE	Ehf_secondary	SCI09	0.0479	NonredundantMotifs:92
SWISSREGULON	HMGA1,2.p2	HMGA1,2	0.218	NonredundantMotifs:93
JASPAR	MA0155.1	INSM1	1.159	NonredundantMotifs:94
HOCOMOCO	PLAG1_f1		3.725	NonredundantMotifs:95
JASPAR	MA0068.1	Pax4	0.153	NonredundantMotifs:96
HOCOMOCO	HINFP_f1		0.255	NonredundantMotifs:97
UNIPROBE	Klf7_secondary	SCI09	0.331	NonredundantMotifs:98
SWISSREGULON	POU1F1.p2	POU1F1	0.089	NonredundantMotifs:99
{{{representative_motif_db}}}	{{{representative_motif_id}}}	{{{representative_motif_name}}}		Serkan/test2/known1
{{{representative_motif_db}}}	{{{representative_motif_id}}}	{{{representative_motif_name}}}		Serkan/test2/known2