Personal tools

User:Serkan/test0

From FANTOM5_SSTAR

< User:Serkan
Revision as of 13:39, 18 September 2013 by Serkan (talk | contribs)
Jump to: navigation, search

GRAPH

Name:{{{name}}}
Namespace:{{{namespace}}}
Definition:{{{def}}}
Xrefs:
links:
{{{xref}}}:[1]
Synonyms: {{{synonym}}}
Comments:{{{comment}}}
Alt_id: {{{alt_id}}}
Subset: {{{subset}}}
Created by:{{{created_by}}}
Creation date:{{{obo_creation_date}}}
Has quality:{{{has_quality}}}

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents NA

Children NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with {{{id}}} ({{{name}}}), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results







"{{{obo_creation_date}}}" contains an extrinsic dash or other characters that are invalid for a date interpretation.




Property "Property value" (as page type) with input value "{{{property_value}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




 NameNovel motifs human sample pval
1motif1_TCGNAG
10motif10_SCGGAGASN
100motif100_GCYTNCTC
101motif101_NAGCAASA
102motif102_GCAAMGT
103motif103_CGGCTAWWT
104motif104_GTWSGMT
105motif105_KTNGNAGWMG
106motif106_KCGCANTC
107motif107_CGTCTGCGTA
... further results




Size of array tfdetailsarray: 0




TF Temp: {{#e[[:Special:Ask/-5B-5BCategory:EntrezGene-5D-5D-20-5B-5BTax-20id::9606-5D-5D-20-5B-5BTf-3F::true-5D-5D/-3FGeneID/-3FSymbol/-3FDescription/mainlabel=-2D/offset=0/format=array/link=none/sort=/order=/headers=hide/titles=show/hidegaps=none/sep=plode:<PROP&gt|2}}, {{#e/propsep=-3CPROP-3E/manysep=-3CMANY-3E/recordsep=-3CRCRD-3E/headersep=|... further resultsplode:/propsep=-3CPROP-3E/manysep=-3CMANY-3E/recordsep=-3CRCRD-3E/headersep=|... further results]]|<PROP&gt|2}}


Size of array number of peaks: 3