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Coexpression cluster:C85

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Full id: C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma



Phase1 CAGE Peaks

Hg19::chr10:117803540..117803547,+p@chr10:117803540..117803547
+
Hg19::chr11:123567559..123567573,+p@chr11:123567559..123567573
+
Hg19::chr11:18477369..18477415,+p1@LDHAL6A
Hg19::chr11:39796850..39796855,+p@chr11:39796850..39796855
+
Hg19::chr11:8680006..8680010,-p@chr11:8680006..8680010
-
Hg19::chr11:8680046..8680060,-p@chr11:8680046..8680060
-
Hg19::chr11:8680082..8680102,-p@chr11:8680082..8680102
-
Hg19::chr12:120805876..120805897,-p6@MSI1
Hg19::chr12:133306843..133306848,-p27@ANKLE2
Hg19::chr12:14570875..14570907,+p@chr12:14570875..14570907
+
Hg19::chr12:14570928..14570945,+p@chr12:14570928..14570945
+
Hg19::chr12:66786385..66786419,-p13@GRIP1
Hg19::chr12:7527226..7527237,-p@chr12:7527226..7527237
-
Hg19::chr12:86777849..86777855,+p@chr12:86777849..86777855
+
Hg19::chr13:35778543..35778559,-p@chr13:35778543..35778559
-
Hg19::chr13:35778741..35778756,+p@chr13:35778741..35778756
+
Hg19::chr13:35782869..35782904,+p@chr13:35782869..35782904
+
Hg19::chr13:35804956..35804976,-p@chr13:35804956..35804976
-
Hg19::chr13:36045103..36045110,+p@chr13:36045103..36045110
+
Hg19::chr13:37494904..37494911,-p24@SMAD9
Hg19::chr13:37494987..37494992,-p23@SMAD9
Hg19::chr13:43873058..43873095,-p@chr13:43873058..43873095
-
Hg19::chr14:23466494..23466503,-p@chr14:23466494..23466503
-
Hg19::chr14:51057166..51057175,+p@chr14:51057166..51057175
+
Hg19::chr14:77387137..77387151,+p@chr14:77387137..77387151
+
Hg19::chr14:79880545..79880553,-p@chr14:79880545..79880553
-
Hg19::chr15:78914288..78914292,-p@chr15:78914288..78914292
-
Hg19::chr16:29825306..29825330,+p@chr16:29825306..29825330
+
Hg19::chr16:49733031..49733072,-p@chr16:49733031..49733072
-
Hg19::chr17:11389592..11389599,-p@chr17:11389592..11389599
-
Hg19::chr17:26891009..26891011,-p14@PIGS
Hg19::chr17:28903475..28903494,+p1@LRRC37BP1
Hg19::chr17:48911942..48911984,+p10@WFIKKN2
Hg19::chr17:50375199..50375224,+p@chr17:50375199..50375224
+
Hg19::chr17:66694330..66694333,-p@chr17:66694330..66694333
-
Hg19::chr17:7095595..7095641,-p5@DLG4
Hg19::chr17:7095642..7095662,-p17@DLG4
Hg19::chr17:7095665..7095701,-p4@DLG4
Hg19::chr17:7095704..7095716,-p25@DLG4
Hg19::chr17:71161140..71161174,+p1@SSTR2
Hg19::chr17:72104508..72104526,-p@chr17:72104508..72104526
-
Hg19::chr17:76713100..76713122,-p11@CYTH1
Hg19::chr17:77681118..77681143,+p1@HP09025
Hg19::chr18:18943559..18943587,+p@chr18:18943559..18943587
+
Hg19::chr18:22253333..22253348,+p@chr18:22253333..22253348
+
Hg19::chr18:435383..435391,-p@chr18:435383..435391
-
Hg19::chr19:34175642..34175654,+p3@CHST8
Hg19::chr19:41197501..41197540,+p1@CU680509
Hg19::chr19:4683283..4683314,-p@chr19:4683283..4683314
-
Hg19::chr1:11514263..11514273,-p@chr1:11514263..11514273
-
Hg19::chr1:116383701..116383706,-p9@NHLH2
Hg19::chr1:116383716..116383723,-p5@NHLH2
Hg19::chr1:116383738..116383752,-p1@NHLH2
Hg19::chr1:116908311..116908336,+p@chr1:116908311..116908336
+
Hg19::chr1:116908533..116908577,+p@chr1:116908533..116908577
+
Hg19::chr1:188791330..188791337,-p@chr1:188791330..188791337
-
Hg19::chr1:210789950..210789954,+p@chr1:210789950..210789954
+
Hg19::chr1:224847944..224847978,-p@chr1:224847944..224847978
-
Hg19::chr1:243557736..243557747,+p@chr1:243557736..243557747
+
Hg19::chr1:244419820..244419822,-p@chr1:244419820..244419822
-
Hg19::chr1:33351572..33351602,+p4@HPCA
Hg19::chr20:42667673..42667680,+p15@TOX2
Hg19::chr20:42863502..42863507,+p@chr20:42863502..42863507
+
Hg19::chr20:45523140..45523148,+p8@EYA2
Hg19::chr20:49838362..49838368,+p@chr20:49838362..49838368
+
Hg19::chr20:51453401..51453404,-p@chr20:51453401..51453404
-
Hg19::chr20:51511829..51511853,-p@chr20:51511829..51511853
-
Hg19::chr20:51511930..51511970,-p@chr20:51511930..51511970
-
Hg19::chr21:39288033..39288044,+p@chr21:39288033..39288044
+
Hg19::chr2:137523086..137523120,+p1@THSD7B
Hg19::chr2:137523123..137523134,+p3@THSD7B
Hg19::chr2:137523143..137523154,+p2@THSD7B
Hg19::chr2:137653110..137653113,+p@chr2:137653110..137653113
+
Hg19::chr2:15040249..15040252,+p@chr2:15040249..15040252
+
Hg19::chr2:15047375..15047384,+p@chr2:15047375..15047384
+
Hg19::chr2:15047385..15047399,+p@chr2:15047385..15047399
+
Hg19::chr2:15047410..15047415,+p@chr2:15047410..15047415
+
Hg19::chr2:15049487..15049491,-p@chr2:15049487..15049491
-
Hg19::chr2:15049978..15049987,-p@chr2:15049978..15049987
-
Hg19::chr2:15050016..15050024,-p@chr2:15050016..15050024
-
Hg19::chr2:15052822..15052826,-p@chr2:15052822..15052826
-
Hg19::chr2:15130380..15130381,-p@chr2:15130380..15130381
-
Hg19::chr2:15200068..15200072,-p@chr2:15200068..15200072
-
Hg19::chr2:156162072..156162084,+p@chr2:156162072..156162084
+
Hg19::chr2:156162148..156162154,+p@chr2:156162148..156162154
+
Hg19::chr2:156287980..156287983,+p@chr2:156287980..156287983
+
Hg19::chr2:15691754..15691803,-p@chr2:15691754..15691803
-
Hg19::chr2:15694908..15694923,-p@chr2:15694908..15694923
-
Hg19::chr2:15694924..15694928,-p@chr2:15694924..15694928
-
Hg19::chr2:15694929..15694950,-p@chr2:15694929..15694950
-
Hg19::chr2:15694960..15694970,-p@chr2:15694960..15694970
-
Hg19::chr2:15703776..15703783,+p@chr2:15703776..15703783
+
Hg19::chr2:15731289..15731298,+p6@DDX1
Hg19::chr2:15731692..15731705,-p@chr2:15731692..15731705
-
Hg19::chr2:15731732..15731744,-p@chr2:15731732..15731744
-
Hg19::chr2:15731782..15731899,-p@chr2:15731782..15731899
-
Hg19::chr2:15731901..15731913,-p@chr2:15731901..15731913
-
Hg19::chr2:15731978..15732050,+p1@DDX1
Hg19::chr2:15732427..15732439,-p@chr2:15732427..15732439
-
Hg19::chr2:15732443..15732474,-p@chr2:15732443..15732474
-
Hg19::chr2:15740801..15740812,+p@chr2:15740801..15740812
+
Hg19::chr2:15748757..15748764,+p@chr2:15748757..15748764
+
Hg19::chr2:15748808..15748813,+p@chr2:15748808..15748813
+
Hg19::chr2:15750164..15750182,+p@chr2:15750164..15750182
+
Hg19::chr2:15750783..15750790,+p@chr2:15750783..15750790
+
Hg19::chr2:15750933..15750939,+p@chr2:15750933..15750939
+
Hg19::chr2:15750941..15750967,+p@chr2:15750941..15750967
+
Hg19::chr2:15771117..15771141,+p@chr2:15771117..15771141
+
Hg19::chr2:15775085..15775089,+p@chr2:15775085..15775089
+
Hg19::chr2:15784374..15784378,+p@chr2:15784374..15784378
+
Hg19::chr2:16082812..16082820,+p@chr2:16082812..16082820
+
Hg19::chr2:177021851..177021861,+p@chr2:177021851..177021861
+
Hg19::chr2:182543783..182543813,-p6@NEUROD1
Hg19::chr2:189159028..189159031,+p36@GULP1
Hg19::chr2:74741642..74741658,+p2@TLX2
Hg19::chr2:74968903..74968927,-p@chr2:74968903..74968927
-
Hg19::chr2:84790187..84790195,+p@chr2:84790187..84790195
+
Hg19::chr3:13084508..13084517,-p@chr3:13084508..13084517
-
Hg19::chr3:29684296..29684311,-p1@RBMS3-AS2
Hg19::chr4:119234424..119234465,-p7@PRSS12
Hg19::chr4:121579996..121580040,+p@chr4:121579996..121580040
+
Hg19::chr4:174440289..174440300,-p@chr4:174440289..174440300
-
Hg19::chr4:174440376..174440389,-p@chr4:174440376..174440389
-
Hg19::chr4:174446653..174446657,-p@chr4:174446653..174446657
-
Hg19::chr4:174446687..174446692,-p@chr4:174446687..174446692
-
Hg19::chr4:174954376..174954399,-p@chr4:174954376..174954399
-
Hg19::chr4:174955165..174955170,-p@chr4:174955165..174955170
-
Hg19::chr4:174968748..174968753,+p@chr4:174968748..174968753
+
Hg19::chr4:175041125..175041137,-p@chr4:175041125..175041137
-
Hg19::chr4:175041762..175041777,-p2@ENST00000503140
Hg19::chr4:175041780..175041792,-p3@ENST00000503140
Hg19::chr4:175131715..175131722,+p@chr4:175131715..175131722
+
Hg19::chr4:175131785..175131801,+p@chr4:175131785..175131801
+
Hg19::chr4:175195325..175195356,-p@chr4:175195325..175195356
-
Hg19::chr4:175204466..175204499,+p5@CEP44
Hg19::chr4:175204510..175204534,+p4@CEP44
Hg19::chr4:175204540..175204549,+p11@CEP44
Hg19::chr4:175204865..175204915,+p2@CEP44
Hg19::chr4:175257438..175257442,+p@chr4:175257438..175257442
+
Hg19::chr4:175259387..175259388,+p1@AK125844
Hg19::chr4:175259702..175259704,+p2@AK125844
Hg19::chr4:3747792..3747806,+p@chr4:3747792..3747806
+
Hg19::chr4:41750047..41750056,-p7@PHOX2B
Hg19::chr4:41750057..41750078,-p3@PHOX2B
Hg19::chr4:41750310..41750322,+p2@ENST00000508038
Hg19::chr4:41750356..41750371,+p1@ENST00000508038
Hg19::chr4:41813448..41813455,-p@chr4:41813448..41813455
-
Hg19::chr4:41875745..41875750,-p@chr4:41875745..41875750
-
Hg19::chr4:80976472..80976514,-p33@ANTXR2
Hg19::chr4:80976547..80976566,-p30@ANTXR2
Hg19::chr4:85046693..85046696,-p@chr4:85046693..85046696
-
Hg19::chr4:85047369..85047375,-p@chr4:85047369..85047375
-
Hg19::chr5:112136808..112136818,+p@chr5:112136808..112136818
+
Hg19::chr5:120720126..120720131,-p@chr5:120720126..120720131
-
Hg19::chr5:134808885..134808888,-p@chr5:134808885..134808888
-
Hg19::chr5:178228030..178228032,-p@chr5:178228030..178228032
-
Hg19::chr5:178259802..178259818,-p@chr5:178259802..178259818
-
Hg19::chr5:178259821..178259898,-p@chr5:178259821..178259898
-
Hg19::chr5:38211560..38211569,-p@chr5:38211560..38211569
-
Hg19::chr5:68176275..68176277,-p@chr5:68176275..68176277
-
Hg19::chr6:117086007..117086014,-p@chr6:117086007..117086014
-
Hg19::chr6:123225630..123225667,+p@chr6:123225630..123225667
+
Hg19::chr6:16905685..16905689,+p@chr6:16905685..16905689
+
Hg19::chr6:16905879..16905882,+p@chr6:16905879..16905882
+
Hg19::chr6:23177224..23177279,-p1@ENST00000420572
Hg19::chr6:23177297..23177304,-p2@ENST00000420572
Hg19::chr6:23523310..23523315,+p@chr6:23523310..23523315
+
Hg19::chr6:3195997..3196015,-p1@LOC100507194
Hg19::chr6:33811774..33811788,+p@chr6:33811774..33811788
+
Hg19::chr6:65970038..65970044,-p@chr6:65970038..65970044
-
Hg19::chr6:79577709..79577716,+p@chr6:79577709..79577716
+
Hg19::chr6:79577721..79577739,+p@chr6:79577721..79577739
+
Hg19::chr6:79577742..79577749,+p@chr6:79577742..79577749
+
Hg19::chr7:1022943..1022954,+p3@CYP2W1
Hg19::chr7:1022973..1022988,+p2@CYP2W1
Hg19::chr7:131641304..131641315,+p@chr7:131641304..131641315
+
Hg19::chr7:18834859..18834879,-p@chr7:18834859..18834879
-
Hg19::chr7:18860636..18860637,-p@chr7:18860636..18860637
-
Hg19::chr7:18860660..18860668,-p@chr7:18860660..18860668
-
Hg19::chr7:18860675..18860696,-p@chr7:18860675..18860696
-
Hg19::chr7:18860722..18860728,-p@chr7:18860722..18860728
-
Hg19::chr7:18860743..18860764,-p@chr7:18860743..18860764
-
Hg19::chr7:18861111..18861118,-p@chr7:18861111..18861118
-
Hg19::chr7:18861136..18861151,-p@chr7:18861136..18861151
-
Hg19::chr7:19146256..19146270,-p@chr7:19146256..19146270
-
Hg19::chr7:19146281..19146282,-p@chr7:19146281..19146282
-
Hg19::chr7:19146371..19146419,-p@chr7:19146371..19146419
-
Hg19::chr7:19184929..19184938,-p4@FERD3L
Hg19::chr7:19185044..19185056,+p@chr7:19185044..19185056
+
Hg19::chr7:19185475..19185487,-p1@FERD3L
Hg19::chr7:19185559..19185569,-p@chr7:19185559..19185569
-
Hg19::chr7:19185585..19185590,-p@chr7:19185585..19185590
-
Hg19::chr7:19185639..19185643,+p@chr7:19185639..19185643
+
Hg19::chr7:19186529..19186536,+p@chr7:19186529..19186536
+
Hg19::chr7:31330919..31330935,+p@chr7:31330919..31330935
+
Hg19::chr7:31342195..31342197,+p@chr7:31342195..31342197
+
Hg19::chr7:31342221..31342227,+p@chr7:31342221..31342227
+
Hg19::chr7:31342233..31342240,+p@chr7:31342233..31342240
+
Hg19::chr7:31726791..31726798,+p2@PPP1R17
Hg19::chr7:43000472..43000514,-p@chr7:43000472..43000514
-
Hg19::chr7:54612889..54612921,+p@chr7:54612889..54612921
+
Hg19::chr7:79220418..79220423,+p@chr7:79220418..79220423
+
Hg19::chr7:79220442..79220449,+p@chr7:79220442..79220449
+
Hg19::chr7:79220491..79220512,+p@chr7:79220491..79220512
+
Hg19::chr7:79224173..79224178,+p@chr7:79224173..79224178
+
Hg19::chr7:79351016..79351020,+p@chr7:79351016..79351020
+
Hg19::chr7:79510641..79510652,+p@chr7:79510641..79510652
+
Hg19::chr7:79512462..79512500,+p@chr7:79512462..79512500
+
Hg19::chr8:104664732..104664739,+p@chr8:104664732..104664739
+
Hg19::chr8:21669826..21669866,-p6@GFRA2
Hg19::chr8:21743352..21743370,-p@chr8:21743352..21743370
-
Hg19::chr8:84824920..84824939,+p1@ENST00000523678
Hg19::chr8:85087398..85087406,-p@chr8:85087398..85087406
-
Hg19::chr8:85087424..85087449,-p@chr8:85087424..85087449
-
Hg19::chr9:120324983..120325003,-p@chr9:120324983..120325003
-
Hg19::chr9:26936427..26936432,-p@chr9:26936427..26936432
-
Hg19::chrX:12989627..12989651,+p@chrX:12989627..12989651
+
Hg19::chrX:12989653..12989663,+p@chrX:12989653..12989663
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

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