Cytoscape test3

FF:10717-109I6, TF to Motif to TF network

Mouseover nodes and edges to see attributes. Motifs are shown in orange, TFs are shown in blue. Promoter and z-score are attributes of the Motif to TF edges (blue arrow). TF to Motif edges are shown in orange.

Motifs shown are the top (maximum 30) motifs in the sample. TFs shown have at least one CAGE promoter with at at least 10 TPM expression (RLE normalized) in the sample. Edges shown have a z-score of at least 1.5 (based on correlation between motif activity and promoter expression).

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Layout: Preset Force Directed Circle Radial Tree Recalculate Labels: Nodes
Edges

Show edges:

TF->MOTIF
Promoters

Promoter Z-Score:

Motif degree:

TF indegree:

TF outdegree: Source (Outdegree > 0)
Target (Outdegree = 0)

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Show only these edges

Export Network: graphml xgmml sif JSON Export Image: PDF PNG SVG

LEGEND: TF , MOTIF ,
MOTIF->TF , TF->MOTIF