NonredundantMotifs:48

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :known48
• db :JASPAR
• Id :MA0108.2
• name :TBP
• score :0.12305722137652626
  
• External refs:

EntrezGene:6908
UniProt:6908

• Internal refs:

EntrezGene:6908

Motif matrix
P0 A C G T 1 61 145 152 31 2 16 46 18 309 3 352 0 2 35 4 3 10 2 374 5 354 0 5 30 6 268 0 0 121 7 360 3 20 6 8 222 2 44 121 9 155 44 157 33 10 56 135 150 48 11 83 147 128 31 12 82 127 128 52 13 82 118 128 61 14 68 107 139 75 15 77 101 140 71