NonredundantMotifs:180

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :known180
• db :SWISSREGULON
• Id :GTF2A1,2.p2
• name :GTF2A1,2
• score :0.0700258131500835
  
• External refs:

EntrezGene:GTF2A1
UniProt:GTF2A1

EntrezGene:2
UniProt:2

• Internal refs:

EntrezGene:GTF2A1

EntrezGene:2

Motif matrix

PO A C G T 1 0.470459 30.618276 1.549277 94.212023 2 46.664693 73.505154 1.833437 4.846751 3 0 5.575778 6.963839 114.310418 4 45.885934 2.674796 48.843714 29.445591 5 69.444167 15.412824 5.961488 36.031556 6 90.606405 0.528435 35.715195 0 7 116.679781 0.471931 9.698323 0 8 8.303826 1.656703 114.958237 1.931269 9 10.281217 8.952193 106.069707 1.546918 10 59.975441 4.657693 62.216901 0 11 27.210159 28.851283 69.822047 0.966546 12 2.249864 78.205061 41.855984 4.539126