UBERON:0009661
From FANTOM5_SSTAR
Name: | midbrain nucleus | |
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Definition: | "Nucleus located in the midbrain." [ZFIN:curator] | |
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Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0002308(nucleus of brain) |
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part_of: | UBERON:0001891(midbrain) |
Children
is a: | UBERON:0002038 (substantia nigra) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10178-103C7 (substantia nigra - adult, donor10196)
- 10358-105E7 (substantia nigra, newborn, donor10223)
- 10371-105G2 (substantia nigra, adult, donor10258)
- 11489-119E4 (Mouse Neurons - substantia nigra, donor4)
- 11490-119E5 (Mouse Neurons - substantia nigra, donor5)
- 11770-123I6 (Mouse Neurons - substantia nigra, donor6)
Mouse (Mus musculus)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10178-103C7 (substantia nigra - adult, donor10196)
- 10358-105E7 (substantia nigra, newborn, donor10223)
- 10371-105G2 (substantia nigra, adult, donor10258)
- 11489-119E4 (Mouse Neurons - substantia nigra, donor4)
- 11490-119E5 (Mouse Neurons - substantia nigra, donor5)
- 11770-123I6 (Mouse Neurons - substantia nigra, donor6)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009661 (midbrain nucleus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data